Wall clock time and date at job start Tue Mar 31 2020 13:29:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86797 * 120.00606 * 2 1
4 4 H 1.48494 * 109.47563 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.46875 * 299.99762 * 3 2 1
6 6 H 1.48501 * 109.47113 * 59.99364 * 3 2 1
7 7 C 1.38804 * 119.99701 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00124 * 180.02562 * 7 2 1
9 9 S 1.76199 * 119.99919 * 359.97438 * 7 2 1
10 10 C 1.80998 * 99.99903 * 179.97438 * 9 7 2
11 11 C 1.50697 * 109.47250 * 179.97438 * 10 9 7
12 12 O 1.21290 * 120.00001 * 0.02562 * 11 10 9
13 13 N 1.34781 * 120.00364 * 179.97438 * 11 10 9
14 14 C 1.47505 * 125.66566 * 0.02562 * 13 11 10
15 15 C 1.55096 * 104.93450 * 203.93811 * 14 13 11
16 16 C 1.54163 * 101.48556 * 323.96684 * 15 14 13
17 17 C 1.47268 * 125.67084 * 180.02562 * 13 11 10
18 18 O 1.42780 * 111.03570 * 274.30940 * 16 15 14
19 19 C 1.44196 * 104.69434 * 265.60026 * 18 16 15
20 20 C 1.51175 * 106.06825 * 332.90421 * 19 18 16
21 21 C 1.37915 * 132.62061 * 196.98838 * 20 19 18
22 22 C 1.38285 * 120.00101 * 180.08432 * 21 20 19
23 23 C 1.38261 * 119.98510 * 0.02562 * 22 21 20
24 24 C 1.38255 * 120.06121 * 359.97438 * 23 22 21
25 25 C 1.37997 * 120.05118 * 359.92001 * 24 23 22
26 26 H 0.97001 * 119.99566 * 0.02562 * 1 2 3
27 27 H 1.09004 * 109.46891 * 60.00285 * 10 9 7
28 28 H 1.09000 * 109.47741 * 300.00579 * 10 9 7
29 29 H 1.09001 * 110.35399 * 322.80353 * 14 13 11
30 30 H 1.09006 * 110.35198 * 84.97009 * 14 13 11
31 31 H 1.09006 * 111.02069 * 205.91258 * 15 14 13
32 32 H 1.09002 * 111.02033 * 82.02046 * 15 14 13
33 33 H 1.09000 * 109.92625 * 58.94370 * 17 13 11
34 34 H 1.09007 * 109.92650 * 297.62734 * 17 13 11
35 35 H 1.08993 * 110.13340 * 92.05551 * 19 18 16
36 36 H 1.09006 * 110.12870 * 213.75906 * 19 18 16
37 37 H 1.07991 * 120.00136 * 0.10935 * 21 20 19
38 38 H 1.08003 * 120.00569 * 180.02562 * 22 21 20
39 39 H 1.08001 * 119.96890 * 179.97438 * 23 22 21
40 40 H 1.08003 * 119.97212 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8918 2.3963 -1.2126
6 1 1.8916 2.3964 1.2124
7 6 2.0102 -1.2021 0.0005
8 1 3.0903 -1.2022 0.0010
9 16 1.1291 -2.7280 0.0019
10 6 2.5156 -3.8915 0.0013
11 6 1.9871 -5.3027 0.0030
12 8 0.7907 -5.5023 0.0040
13 7 2.8438 -6.3433 0.0024
14 6 4.3156 -6.2455 0.0007
15 6 4.8045 -7.5859 -0.6074
16 6 3.7672 -8.5761 -0.0417
17 6 2.4660 -7.7667 0.0033
18 8 4.1480 -9.0310 1.2570
19 6 4.8538 -10.2658 1.0197
20 6 4.2993 -10.8232 -0.2715
21 6 4.3467 -12.0770 -0.8440
22 6 3.7372 -12.3033 -2.0645
23 6 3.0808 -11.2723 -2.7108
24 6 3.0327 -10.0150 -2.1378
25 6 3.6383 -9.7875 -0.9189
26 1 -0.4849 0.8401 -0.0004
27 1 3.1249 -3.7310 0.8909
28 1 3.1237 -3.7319 -0.8891
29 1 4.6392 -5.4083 -0.6178
30 1 4.6891 -6.1306 1.0183
31 1 5.8084 -7.8299 -0.2597
32 1 4.7656 -7.5584 -1.6964
33 1 1.8588 -7.9904 -0.8738
34 1 1.9124 -8.0035 0.9120
35 1 5.9218 -10.0738 0.9174
36 1 4.6739 -10.9638 1.8374
37 1 4.8595 -12.8821 -0.3391
38 1 3.7740 -13.2853 -2.5127
39 1 2.6052 -11.4493 -3.6642
40 1 2.5191 -9.2108 -2.6437
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000186931544.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:33
Heat of formation + Delta-G solvation = -56.503264 kcal
Electronic energy + Delta-G solvation = -23703.452524 eV
Core-core repulsion = 20187.857842 eV
Total energy + Delta-G solvation = -3515.594682 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-42.45046 -40.61851 -38.76728 -37.42525 -34.59564 -33.29549 -32.35535 -31.56993
-30.98205 -29.37895 -27.69210 -26.60450 -25.05628 -23.77489 -22.58175 -21.17660
-20.78988 -19.64820 -18.30866 -18.07275 -17.36921 -16.95002 -16.89321 -16.77195
-16.43421 -16.25269 -15.72528 -15.36262 -15.07710 -14.82125 -14.52262 -14.42777
-14.07561 -13.93478 -13.75734 -13.50196 -13.21364 -13.15534 -13.08938 -12.91423
-12.81663 -12.61209 -12.43352 -12.15818 -11.77712 -11.69463 -11.16530 -11.08719
-11.04577 -10.29824 -9.91485 -9.79926 -9.56648 -8.69755 -8.35489 -6.14506
0.20898 0.35829 1.20306 1.41709 1.43139 1.48991 1.56580 1.98480
2.26083 2.64601 2.68893 2.98799 3.08284 3.21810 3.41767 3.44038
3.53180 3.83903 3.96452 4.10599 4.17641 4.19979 4.22892 4.35776
4.40593 4.45352 4.48909 4.52912 4.59356 4.66643 4.71596 4.79702
4.88265 4.96464 5.04459 5.16318 5.36781 5.41399 5.42320 5.52033
5.73657 5.96918 6.19404 6.27915 7.01911 7.05629 8.74218
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.031780 B = 0.002532 C = 0.002467
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 880.852240 B =11056.532102 C =11346.184700
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.012 3.988
3 Si 1.002 2.998
4 H -0.256 1.256
5 H -0.273 1.273
6 H -0.274 1.274
7 C -0.544 4.544
8 H 0.084 0.916
9 S -0.151 6.151
10 C -0.118 4.118
11 C 0.547 3.453
12 O -0.566 6.566
13 N -0.616 5.616
14 C 0.095 3.905
15 C -0.127 4.127
16 C 0.145 3.855
17 C 0.117 3.883
18 O -0.360 6.360
19 C 0.084 3.916
20 C -0.136 4.136
21 C -0.097 4.097
22 C -0.111 4.111
23 C -0.120 4.120
24 C -0.102 4.102
25 C -0.132 4.132
26 H 0.271 0.729
27 H 0.107 0.893
28 H 0.111 0.889
29 H 0.096 0.904
30 H 0.082 0.918
31 H 0.116 0.884
32 H 0.097 0.903
33 H 0.078 0.922
34 H 0.060 0.940
35 H 0.101 0.899
36 H 0.113 0.887
37 H 0.151 0.849
38 H 0.156 0.844
39 H 0.148 0.852
40 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.943 -26.653 -3.679 31.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.193 4.193
3 Si 0.823 3.177
4 H -0.179 1.179
5 H -0.198 1.198
6 H -0.199 1.199
7 C -0.691 4.691
8 H 0.102 0.898
9 S 0.076 5.924
10 C -0.269 4.269
11 C 0.336 3.664
12 O -0.444 6.444
13 N -0.351 5.351
14 C -0.027 4.027
15 C -0.165 4.165
16 C 0.104 3.896
17 C -0.005 4.005
18 O -0.279 6.279
19 C 0.008 3.992
20 C -0.137 4.137
21 C -0.115 4.115
22 C -0.129 4.129
23 C -0.137 4.137
24 C -0.120 4.120
25 C -0.133 4.133
26 H 0.080 0.920
27 H 0.125 0.875
28 H 0.129 0.871
29 H 0.114 0.886
30 H 0.101 0.899
31 H 0.134 0.866
32 H 0.115 0.885
33 H 0.096 0.904
34 H 0.078 0.922
35 H 0.119 0.881
36 H 0.131 0.869
37 H 0.169 0.831
38 H 0.174 0.826
39 H 0.165 0.835
40 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 14.944 -26.686 -3.452 30.780
hybrid contribution 1.093 1.291 -0.010 1.691
sum 16.037 -25.396 -3.462 30.234
Atomic orbital electron populations
1.70196 1.08028 1.28595 1.48019 1.26168 0.96002 1.03406 0.93695
0.84866 0.78611 0.76124 0.78091 1.17919 1.19847 1.19942 1.23216
0.95347 0.91715 1.58861 0.89802 1.85617 1.10431 0.99322 1.97041
1.23295 1.03525 0.93471 1.06610 1.19858 0.85362 0.85958 0.75267
1.90689 1.17044 1.85767 1.50937 1.48486 1.08207 1.04985 1.73451
1.22668 0.77629 0.99773 1.02621 1.23123 0.99638 0.91959 1.01800
1.20640 0.93819 0.91944 0.83163 1.21865 0.96421 0.79932 1.02329
1.89032 1.75121 1.38866 1.24836 1.22094 0.96955 0.85157 0.94970
1.21293 0.99576 0.94962 0.97836 1.20727 0.99693 0.95217 0.95854
1.21560 0.96376 1.00295 0.94625 1.21448 0.99261 0.92084 1.00937
1.20621 0.98824 0.98480 0.94065 1.20450 1.01420 0.94739 0.96644
0.91960 0.87508 0.87062 0.88571 0.89947 0.86581 0.88499 0.90408
0.92166 0.88135 0.86899 0.83113 0.82636 0.83465 0.85939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.69 13.22 21.65 0.29 -56.41 16
2 C 0.01 0.68 5.49 84.86 0.47 1.15 16
3 Si 1.00 43.95 29.55 68.60 2.03 45.98 16
4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16
5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16
6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
7 C -0.54 -31.46 9.50 67.96 0.65 -30.82 16
8 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16
9 S -0.15 -8.66 20.57 -56.49 -1.16 -9.83 16
10 C -0.12 -4.98 5.17 71.24 0.37 -4.61 16
11 C 0.55 22.57 7.87 87.66 0.69 23.26 16
12 O -0.57 -28.58 16.19 -3.06 -0.05 -28.63 16
13 N -0.62 -19.22 3.34 -812.55 -2.71 -21.93 16
14 C 0.09 2.07 6.70 86.91 0.58 2.65 16
15 C -0.13 -2.16 6.22 31.71 0.20 -1.97 16
16 C 0.14 3.06 0.89 -11.23 -0.01 3.05 16
17 C 0.12 3.34 6.28 86.33 0.54 3.88 16
18 O -0.36 -7.80 11.12 -148.98 -1.66 -9.46 16
19 C 0.08 1.17 7.61 71.39 0.54 1.71 16
20 C -0.14 -2.09 6.33 -19.64 -0.12 -2.21 16
21 C -0.10 -1.09 10.04 22.20 0.22 -0.87 16
22 C -0.11 -1.16 10.05 22.29 0.22 -0.93 16
23 C -0.12 -1.55 10.05 22.28 0.22 -1.33 16
24 C -0.10 -1.77 9.52 22.22 0.21 -1.56 16
25 C -0.13 -2.47 5.10 -19.95 -0.10 -2.58 16
26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16
27 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16
28 H 0.11 4.18 7.85 -2.40 -0.02 4.16 16
29 H 0.10 1.87 7.49 -2.39 -0.02 1.85 16
30 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16
31 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16
32 H 0.10 1.52 8.05 -2.39 -0.02 1.50 16
33 H 0.08 2.24 7.09 -2.39 -0.02 2.22 16
34 H 0.06 1.94 8.07 -2.38 -0.02 1.92 16
35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
36 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16
37 H 0.15 0.86 8.06 -2.92 -0.02 0.84 16
38 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16
39 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16
40 H 0.12 2.13 7.71 -2.91 -0.02 2.11 16
Total: -1.00 -80.27 349.38 2.46 -77.81
By element:
Atomic # 1 Polarization: 12.59 SS G_CDS: 1.05 Total: 13.64 kcal
Atomic # 6 Polarization: -15.85 SS G_CDS: 4.68 Total: -11.17 kcal
Atomic # 7 Polarization: -75.92 SS G_CDS: -2.42 Total: -78.34 kcal
Atomic # 8 Polarization: -36.38 SS G_CDS: -1.71 Total: -38.09 kcal
Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal
Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal
Total: -80.27 2.46 -77.81 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186931544.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.309 kcal
(2) G-P(sol) polarization free energy of solvation -80.273 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.964 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.812 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds