Wall clock time and date at job start Tue Mar 31 2020 13:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00186 * 2 1 4 4 H 1.48499 * 109.47494 * 89.99520 * 3 2 1 5 5 H 1.48502 * 109.47096 * 209.99893 * 3 2 1 6 6 H 1.48504 * 109.47236 * 329.99446 * 3 2 1 7 7 C 1.37886 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99984 * 5.13851 * 7 2 1 9 9 C 1.50706 * 119.99589 * 185.13516 * 7 2 1 10 10 O 1.42890 * 112.93948 * 52.41060 * 9 7 2 11 11 C 1.53936 * 113.73345 * 280.69653 * 9 7 2 12 12 N 1.47951 * 86.17971 * 221.92550 * 11 9 7 13 13 C 1.46905 * 110.99822 * 137.58619 * 12 11 9 14 14 C 1.50706 * 109.47340 * 70.63960 * 13 12 11 15 15 C 1.38213 * 119.98736 * 89.99434 * 14 13 12 16 16 C 1.38442 * 119.97409 * 179.97438 * 15 14 13 17 17 F 1.35099 * 120.02285 * 179.97438 * 16 15 14 18 18 C 1.38475 * 119.94893 * 0.02562 * 16 15 14 19 19 C 1.38180 * 119.97200 * 0.02562 * 18 16 15 20 20 C 1.50705 * 119.98297 * 179.97438 * 19 18 16 21 21 F 1.39896 * 109.47446 * 359.97438 * 20 19 18 22 22 F 1.39903 * 109.47097 * 119.99989 * 20 19 18 23 23 F 1.39906 * 109.46813 * 239.99725 * 20 19 18 24 24 C 1.38223 * 119.98651 * 269.72512 * 14 13 12 25 25 C 1.47949 * 90.76613 * 24.69333 * 12 11 9 26 26 H 0.96998 * 120.00034 * 174.95957 * 1 2 3 27 27 H 0.96708 * 113.99980 * 304.19125 * 10 9 7 28 28 H 1.09000 * 113.76260 * 336.24966 * 11 9 7 29 29 H 1.09003 * 113.75356 * 107.60639 * 11 9 7 30 30 H 1.08999 * 109.47421 * 190.63970 * 13 12 11 31 31 H 1.09004 * 109.47241 * 310.64132 * 13 12 11 32 32 H 1.08007 * 120.01438 * 0.02562 * 15 14 13 33 33 H 1.08001 * 120.01224 * 179.97438 * 18 16 15 34 34 H 1.08003 * 119.97327 * 0.02562 * 24 14 13 35 35 H 1.09002 * 113.76401 * 220.98939 * 25 12 11 36 36 H 1.09002 * 113.86317 * 89.64192 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4677 -2.1276 -0.0828 9 6 3.5070 -1.1966 0.1174 10 8 3.9800 -0.4419 1.2346 11 6 4.2316 -0.8750 -1.2022 12 7 5.1700 -1.9587 -0.8360 13 6 5.4903 -2.7938 -2.0014 14 6 6.3556 -2.0127 -2.9566 15 6 7.7317 -2.0574 -2.8365 16 6 8.5263 -1.3402 -3.7145 17 9 9.8716 -1.3827 -3.5977 18 6 7.9411 -0.5783 -4.7119 19 6 6.5650 -0.5344 -4.8293 20 6 5.9278 0.2951 -5.9143 21 9 6.9253 0.9227 -6.6681 22 9 5.1648 -0.5316 -6.7459 23 9 5.1017 1.2646 -5.3356 24 6 5.7727 -1.2564 -3.9560 25 6 4.1347 -2.5978 0.0058 26 1 -0.4850 -0.8368 -0.0738 27 1 3.6758 0.4761 1.2464 28 1 3.6393 -1.0888 -2.0919 29 1 4.6891 0.1141 -1.2221 30 1 6.0245 -3.6856 -1.6736 31 1 4.5680 -3.0866 -2.5031 32 1 8.1871 -2.6523 -2.0585 33 1 8.5600 -0.0181 -5.3971 34 1 4.6974 -1.2252 -4.0515 35 1 4.5148 -2.9853 0.9510 36 1 3.5133 -3.3162 -0.5289 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190980556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:27 Heat of formation + Delta-G solvation = -192.908885 kcal Electronic energy + Delta-G solvation = -27195.199144 eV Core-core repulsion = 22565.619554 eV Total energy + Delta-G solvation = -4629.579590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.27316 -50.04477 -48.78710 -48.73317 -41.40361 -40.12717 -36.71744 -34.63173 -33.93432 -32.33787 -29.96154 -27.43446 -27.40239 -27.03820 -24.30431 -23.49225 -22.22950 -20.88155 -19.98271 -19.59175 -19.57755 -19.38110 -17.76448 -17.50205 -17.44857 -17.32555 -16.93012 -16.72248 -16.41789 -15.72454 -15.63037 -15.41961 -15.16499 -15.14466 -14.97399 -14.88646 -14.86804 -14.42125 -14.23071 -13.99453 -13.82656 -13.52381 -13.42666 -13.11233 -12.90574 -12.68473 -12.28677 -12.16385 -11.99032 -11.54676 -11.16857 -10.93986 -10.50598 -10.26072 -10.00165 -9.72541 -8.78855 -6.58125 -0.36056 -0.12942 1.35260 1.44890 1.47969 1.58062 2.09073 2.35965 2.50923 2.80552 2.87178 3.01675 3.09427 3.28566 3.47069 3.66397 3.75310 3.77906 3.98812 4.03063 4.11223 4.15237 4.24375 4.51958 4.57218 4.73369 4.77026 4.80071 4.87053 4.89962 5.12660 5.15740 5.34002 5.54610 5.64876 5.88638 6.10067 6.39033 6.83583 7.25799 8.52980 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.013391 B = 0.004725 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.526456 B = 5924.980949 C = 7108.424283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 1.060 2.940 4 H -0.256 1.256 5 H -0.232 1.232 6 H -0.287 1.287 7 C -0.614 4.614 8 H 0.033 0.967 9 C 0.182 3.818 10 O -0.560 6.560 11 C -0.021 4.021 12 N -0.467 5.467 13 C 0.052 3.948 14 C -0.048 4.048 15 C -0.097 4.097 16 C 0.096 3.904 17 F -0.132 7.132 18 C -0.106 4.106 19 C -0.160 4.160 20 C 0.514 3.486 21 F -0.172 7.172 22 F -0.176 7.176 23 F -0.180 7.180 24 C -0.079 4.079 25 C 0.030 3.970 26 H 0.257 0.743 27 H 0.356 0.644 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.383 -2.284 -11.736 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.213 4.213 3 Si 0.882 3.118 4 H -0.182 1.182 5 H -0.156 1.156 6 H -0.214 1.214 7 C -0.652 4.652 8 H 0.052 0.948 9 C 0.141 3.859 10 O -0.370 6.370 11 C -0.150 4.150 12 N -0.189 5.189 13 C -0.075 4.075 14 C -0.048 4.048 15 C -0.116 4.116 16 C 0.077 3.923 17 F -0.111 7.111 18 C -0.125 4.125 19 C -0.162 4.162 20 C 0.460 3.540 21 F -0.153 7.153 22 F -0.157 7.157 23 F -0.161 7.161 24 C -0.098 4.098 25 C -0.098 4.098 26 H 0.066 0.934 27 H 0.206 0.794 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.180 0.820 33 H 0.184 0.816 34 H 0.154 0.846 35 H 0.106 0.894 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.151 -1.087 -11.288 21.403 hybrid contribution -1.567 -1.433 -0.745 2.250 sum 16.584 -2.519 -12.034 20.644 Atomic orbital electron populations 1.70910 1.08041 1.30252 1.47387 1.27147 0.96361 1.06214 0.91622 0.83995 0.76286 0.72227 0.79304 1.18151 1.15610 1.21352 1.22586 0.92801 0.94429 1.55392 0.94833 1.20584 0.90827 0.91028 0.83483 1.86417 1.75879 1.25992 1.48680 1.24918 0.93744 0.96824 0.99523 1.68639 1.30196 1.07040 1.13060 1.21749 0.98581 0.96419 0.90799 1.19513 0.93471 0.97087 0.94757 1.21425 0.92915 0.98759 0.98469 1.17406 0.77399 1.00027 0.97510 1.91538 1.28865 1.95163 1.95521 1.21031 0.93590 0.99159 0.98740 1.19646 0.94668 1.03021 0.98854 1.18134 0.76364 0.78186 0.81290 1.93172 1.60834 1.83439 1.77889 1.93227 1.76833 1.71950 1.73737 1.93251 1.73492 1.65000 1.84350 1.21026 1.00800 0.94511 0.93470 1.23929 0.91816 0.95658 0.98430 0.93373 0.79374 0.91046 0.90279 0.87056 0.92376 0.81971 0.81580 0.84574 0.89427 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.70 21.45 0.29 -55.63 16 2 C -0.01 -0.75 5.47 84.66 0.46 -0.29 16 3 Si 1.06 45.93 24.79 68.60 1.70 47.63 16 4 H -0.26 -10.21 6.95 99.48 0.69 -9.52 16 5 H -0.23 -8.81 4.85 99.48 0.48 -8.33 16 6 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.61 -32.96 9.04 25.60 0.23 -32.72 16 8 H 0.03 1.96 8.04 -2.91 -0.02 1.94 16 9 C 0.18 8.13 1.06 -10.89 -0.01 8.12 16 10 O -0.56 -25.69 13.42 -148.98 -2.00 -27.68 16 11 C -0.02 -0.80 5.12 86.41 0.44 -0.36 16 12 N -0.47 -15.49 6.25 -915.57 -5.72 -21.21 16 13 C 0.05 1.30 4.97 85.56 0.43 1.73 16 14 C -0.05 -1.10 5.12 -19.87 -0.10 -1.20 16 15 C -0.10 -1.96 9.68 22.31 0.22 -1.74 16 16 C 0.10 1.92 7.30 22.38 0.16 2.08 16 17 F -0.13 -2.67 17.27 44.97 0.78 -1.90 16 18 C -0.11 -2.06 9.41 22.31 0.21 -1.85 16 19 C -0.16 -3.52 5.37 -19.87 -0.11 -3.62 16 20 C 0.51 11.49 3.32 71.24 0.24 11.73 16 21 F -0.17 -3.52 15.97 44.97 0.72 -2.81 16 22 F -0.18 -4.06 17.23 44.97 0.77 -3.29 16 23 F -0.18 -4.62 17.24 44.97 0.78 -3.84 16 24 C -0.08 -1.88 8.53 22.27 0.19 -1.69 16 25 C 0.03 1.12 7.36 86.41 0.64 1.76 16 26 H 0.26 15.62 8.72 -92.71 -0.81 14.81 16 27 H 0.36 15.24 4.23 -74.05 -0.31 14.93 16 28 H 0.07 2.70 7.06 -2.39 -0.02 2.69 16 29 H 0.08 3.02 6.52 -2.39 -0.02 3.01 16 30 H 0.11 2.25 8.09 -2.39 -0.02 2.23 16 31 H 0.06 1.46 7.63 -2.38 -0.02 1.44 16 32 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.17 2.56 7.16 -2.91 -0.02 2.54 16 34 H 0.14 3.31 7.46 -2.91 -0.02 3.29 16 35 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.08 2.80 7.75 -2.39 -0.02 2.78 16 Total: -1.00 -61.96 315.38 0.87 -61.08 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.56 Total: 25.71 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 2.99 Total: -18.06 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -5.43 Total: -76.85 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -2.00 Total: -27.68 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 3.05 Total: -11.83 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.70 Total: 47.63 kcal Total: -61.96 0.87 -61.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190980556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.825 kcal (2) G-P(sol) polarization free energy of solvation -61.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds