Wall clock time and date at job start Tue Mar 31 2020 12:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21626 * 119.99801 * 0.02562 * 13 12 2 15 15 C 1.47196 * 120.00137 * 180.02562 * 13 12 2 16 16 C 1.38174 * 126.77302 * 179.70962 * 15 13 12 17 17 C 1.40677 * 105.30086 * 179.91846 * 16 15 13 18 18 C 1.48450 * 126.21676 * 180.09035 * 17 16 15 19 19 C 1.39318 * 120.10152 * 0.02562 * 18 17 16 20 20 C 1.38004 * 119.89357 * 179.76218 * 19 18 17 21 21 C 1.38440 * 120.10294 * 0.48828 * 20 19 18 22 22 Cl 1.73600 * 119.89328 * 179.74347 * 21 20 19 23 23 C 1.38429 * 120.21138 * 359.75798 * 21 20 19 24 24 C 1.38010 * 120.10771 * 0.02562 * 23 21 20 25 25 N 1.31635 * 107.57562 * 0.35552 * 17 16 15 26 26 N 1.28429 * 110.79335 * 359.77081 * 25 17 16 27 27 H 0.96990 * 125.06364 * 179.97438 * 26 25 17 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 32 32 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 33 33 H 1.08005 * 127.34938 * 0.04459 * 16 15 13 34 34 H 1.08002 * 120.05491 * 359.97438 * 19 18 17 35 35 H 1.07995 * 119.95014 * 180.20396 * 20 19 18 36 36 H 1.08002 * 119.94559 * 179.97438 * 23 21 20 37 37 H 1.07992 * 120.05442 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8581 1.1620 -2.4116 15 6 2.6372 -0.7121 -3.5592 16 6 2.8166 -0.1645 -4.8151 17 6 3.2990 -1.2174 -5.6137 18 6 3.6504 -1.1361 -7.0537 19 6 3.5129 0.0687 -7.7395 20 6 3.8455 0.1407 -9.0770 21 6 4.3055 -0.9844 -9.7396 22 17 4.7160 -0.8894 -11.4237 23 6 4.4390 -2.1851 -9.0636 24 6 4.1131 -2.2658 -7.7249 25 7 3.3769 -2.2893 -4.8536 26 7 2.9989 -2.0265 -3.6546 27 1 2.9735 -2.6658 -2.9257 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 0.7096 1.1617 3.4844 32 1 2.2491 -1.6316 -1.1527 33 1 2.6286 0.8549 -5.1184 34 1 3.1499 0.9459 -7.2245 35 1 3.7424 1.0750 -9.6087 36 1 4.7979 -3.0602 -9.5848 37 1 4.2171 -3.2030 -7.1985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194652010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:41 Heat of formation + Delta-G solvation = 26.760054 kcal Electronic energy + Delta-G solvation = -22520.258277 eV Core-core repulsion = 18902.690114 eV Total energy + Delta-G solvation = -3617.568163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.63789 -40.47341 -40.03566 -37.42845 -36.85063 -34.58575 -33.85315 -32.46724 -31.91215 -30.93059 -30.16898 -27.37297 -25.26387 -24.57296 -23.67175 -22.36512 -21.78968 -21.12289 -20.35619 -18.28097 -18.06680 -17.25834 -17.11091 -16.88376 -16.39527 -16.25242 -15.74363 -15.55766 -15.12335 -14.81881 -14.57104 -14.47794 -14.44332 -14.27821 -13.75558 -13.05324 -12.92679 -12.80430 -12.78322 -12.67889 -12.61009 -12.31303 -12.16838 -12.03184 -11.69391 -11.16645 -11.11921 -10.93110 -10.64510 -10.35060 -10.02035 -9.88698 -9.20849 -8.20286 -6.37787 -0.19477 0.16325 0.34816 1.16399 1.43990 1.45660 1.55136 1.56630 1.68857 2.16347 2.18718 2.44610 2.81118 3.11012 3.19701 3.63380 3.77114 3.96655 3.99475 4.27381 4.34143 4.48778 4.58065 4.69426 4.73389 4.89228 5.01393 5.04518 5.08527 5.25725 5.34994 5.36918 5.43463 5.50393 5.61964 5.77200 5.80060 5.91359 6.04929 6.64983 6.70527 6.83291 7.18503 7.36805 8.86172 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.041282 B = 0.002067 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.094361 B =13540.213595 C =13974.604669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H 0.007 0.993 4 C -0.547 4.547 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.280 1.280 12 N -0.695 5.695 13 C 0.577 3.423 14 O -0.573 6.573 15 C -0.032 4.032 16 C -0.148 4.148 17 C 0.055 3.945 18 C -0.013 4.013 19 C -0.091 4.091 20 C -0.108 4.108 21 C -0.040 4.040 22 Cl -0.070 7.070 23 C -0.110 4.110 24 C -0.088 4.088 25 N -0.258 5.258 26 N -0.356 5.356 27 H 0.460 0.540 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.015 0.985 31 H 0.266 0.734 32 H 0.403 0.597 33 H 0.175 0.825 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.649 -7.736 -22.620 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.025 0.975 4 C -0.585 4.585 5 H 0.094 0.906 6 C -0.185 4.185 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.206 1.206 12 N -0.344 5.344 13 C 0.362 3.638 14 O -0.452 6.452 15 C -0.160 4.160 16 C -0.177 4.177 17 C -0.100 4.100 18 C -0.015 4.015 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.067 4.067 22 Cl -0.041 7.041 23 C -0.128 4.128 24 C -0.107 4.107 25 N -0.092 5.092 26 N -0.075 5.075 27 H 0.308 0.692 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.192 0.808 34 H 0.167 0.833 35 H 0.173 0.827 36 H 0.171 0.829 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.657 -7.881 -22.587 24.832 hybrid contribution -0.078 0.090 1.445 1.450 sum 6.579 -7.791 -21.142 23.473 Atomic orbital electron populations 1.21927 0.97909 0.99740 0.99943 1.18470 0.91369 0.92230 0.81161 0.97542 1.21527 1.32756 1.13698 0.90539 0.90594 1.25776 0.94856 0.95580 1.02295 1.70043 1.36786 1.23767 1.24666 0.85292 0.78042 0.78508 0.78451 1.18317 1.21123 1.20552 1.46185 1.64656 1.13984 1.09534 1.17361 0.78015 0.86090 0.82317 1.90787 1.52773 1.16669 1.84990 1.21595 1.10655 0.86920 0.96810 1.22311 1.03557 1.01539 0.90257 1.20473 1.05303 0.89689 0.94548 1.17911 1.00433 0.95115 0.88006 1.21290 0.98529 0.97409 0.93795 1.21175 0.98874 0.98498 0.94108 1.21191 1.03443 0.96126 0.85967 1.98376 1.92147 1.98582 1.14980 1.21174 1.00342 0.97301 0.94025 1.21269 0.97206 0.98514 0.93760 1.73240 1.18257 1.26108 0.91622 1.43631 1.46180 1.08330 1.09370 0.69200 0.91213 0.93898 0.96585 0.92463 0.76248 0.80760 0.83295 0.82742 0.82937 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.58 9.26 71.98 0.67 -5.92 16 2 C 0.27 13.29 2.56 44.24 0.11 13.40 16 3 H 0.01 0.39 7.58 -2.39 -0.02 0.37 16 4 C -0.55 -27.40 8.73 25.60 0.22 -27.18 16 5 H 0.08 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.02 0.80 5.30 84.66 0.45 1.25 16 7 N -0.91 -50.61 11.32 21.45 0.24 -50.37 16 8 Si 0.97 40.41 29.54 68.60 2.03 42.43 16 9 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 10 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 12 N -0.70 -26.77 5.07 -449.59 -2.28 -29.05 16 13 C 0.58 22.22 7.77 86.60 0.67 22.90 16 14 O -0.57 -26.98 16.57 -4.11 -0.07 -27.05 16 15 C -0.03 -0.94 7.14 40.73 0.29 -0.65 16 16 C -0.15 -4.02 10.18 22.85 0.23 -3.79 16 17 C 0.06 1.35 6.99 42.49 0.30 1.64 16 18 C -0.01 -0.26 5.88 -20.04 -0.12 -0.38 16 19 C -0.09 -1.55 9.58 22.47 0.22 -1.34 16 20 C -0.11 -1.63 9.81 22.26 0.22 -1.41 16 21 C -0.04 -0.63 6.32 22.36 0.14 -0.49 16 22 Cl -0.07 -1.02 28.95 -2.72 -0.08 -1.10 16 23 C -0.11 -1.67 9.81 22.26 0.22 -1.45 16 24 C -0.09 -1.55 9.69 22.47 0.22 -1.34 16 25 N -0.26 -6.25 11.83 -48.23 -0.57 -6.82 16 26 N -0.36 -8.41 6.84 -48.07 -0.33 -8.73 16 27 H 0.46 8.02 8.20 -220.02 -1.80 6.21 16 28 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.40 12.35 7.71 -92.71 -0.71 11.63 16 33 H 0.18 4.31 7.43 -2.91 -0.02 4.29 16 34 H 0.15 2.16 7.10 -2.91 -0.02 2.14 16 35 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.14 2.34 7.86 -2.91 -0.02 2.31 16 Total: -1.00 -65.01 340.86 1.41 -63.60 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -1.38 Total: 21.83 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 3.84 Total: -4.74 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -2.93 Total: -94.97 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.07 Total: -27.05 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -65.01 1.41 -63.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194652010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.361 kcal (2) G-P(sol) polarization free energy of solvation -65.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds