Wall clock time and date at job start Tue Mar 31 2020 12:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47013 * 2 1 4 4 N 1.46505 * 109.46574 * 177.32982 * 3 2 1 5 5 C 1.36943 * 119.99712 * 263.70762 * 4 3 2 6 6 H 1.08002 * 119.99847 * 187.12187 * 5 4 3 7 7 C 1.38812 * 120.00102 * 7.12659 * 5 4 3 8 8 N 1.31618 * 120.00040 * 25.31180 * 7 5 4 9 9 Si 1.86796 * 119.99939 * 205.31316 * 7 5 4 10 10 H 1.48498 * 109.47270 * 89.99919 * 9 7 5 11 11 H 1.48503 * 109.47092 * 210.00441 * 9 7 5 12 12 H 1.48503 * 109.47080 * 329.99562 * 9 7 5 13 13 C 1.46499 * 120.00057 * 83.71533 * 4 3 2 14 14 C 1.50700 * 109.47142 * 84.73240 * 13 4 3 15 15 C 1.38157 * 120.02564 * 260.08452 * 14 13 4 16 16 C 1.38347 * 120.04701 * 180.02562 * 15 14 13 17 17 Cl 1.73602 * 119.95939 * 179.97438 * 16 15 14 18 18 C 1.38386 * 120.07922 * 359.97438 * 16 15 14 19 19 C 1.38119 * 120.04442 * 359.74522 * 18 16 15 20 20 C 1.38711 * 120.01563 * 80.06131 * 14 13 4 21 21 O 1.35916 * 120.04438 * 359.97438 * 20 14 13 22 22 C 1.42899 * 116.99681 * 179.97438 * 21 20 14 23 23 F 1.39895 * 109.47759 * 300.00226 * 22 21 20 24 24 F 1.39904 * 109.46803 * 60.00706 * 22 21 20 25 25 H 1.09008 * 109.46856 * 60.00251 * 1 2 3 26 26 H 1.09000 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47339 * 300.00473 * 1 2 3 28 28 H 1.08995 * 109.47456 * 239.99879 * 2 1 3 29 29 H 1.08999 * 109.47097 * 119.99834 * 2 1 3 30 30 H 1.08996 * 109.46899 * 57.33095 * 3 2 1 31 31 H 1.08993 * 109.46878 * 297.33062 * 3 2 1 32 32 H 0.96997 * 120.00127 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46948 * 324.73695 * 13 4 3 34 34 H 1.09000 * 109.47101 * 204.73186 * 13 4 3 35 35 H 1.08009 * 119.97857 * 359.97438 * 15 14 13 36 36 H 1.08002 * 119.97725 * 180.02562 * 18 16 15 37 37 H 1.08004 * 120.02148 * 180.28231 * 19 18 16 38 38 H 1.09004 * 109.47016 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5036 1.4430 0.0644 5 6 4.1359 1.5914 1.2700 6 1 5.2091 1.7072 1.3063 7 6 3.3975 1.5930 2.4454 8 7 2.2327 0.9819 2.4917 9 14 4.0569 2.4624 3.9615 10 1 3.5960 3.8741 3.9623 11 1 3.5577 1.7779 5.1811 12 1 5.5414 2.4264 3.9463 13 6 4.2907 1.2847 -1.1610 14 6 4.4580 2.6260 -1.8274 15 6 3.6539 2.9720 -2.8962 16 6 3.8075 4.2030 -3.5086 17 17 2.7963 4.6352 -4.8519 18 6 4.7661 5.0903 -3.0516 19 6 5.5680 4.7503 -1.9796 20 6 5.4192 3.5142 -1.3675 21 8 6.2105 3.1759 -0.3155 22 6 7.1790 4.1394 0.1038 23 9 8.0544 4.4111 -0.9530 24 9 6.5291 5.3179 0.4859 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6381 1.9700 0.8651 31 1 1.7162 1.9423 -0.9129 32 1 1.7169 0.9826 3.3131 33 1 3.7752 0.6042 -1.8387 34 1 5.2709 0.8774 -0.9132 35 1 2.9055 2.2807 -3.2546 36 1 4.8843 6.0510 -3.5306 37 1 6.3130 5.4449 -1.6204 38 1 7.7416 3.7445 0.9498 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194968381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:02 Heat of formation + Delta-G solvation = -116.225881 kcal Electronic energy + Delta-G solvation = -25741.454122 eV Core-core repulsion = 21666.996437 eV Total energy + Delta-G solvation = -4074.457685 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.29117 -48.27649 -41.14878 -38.66091 -37.97947 -37.09526 -34.04273 -33.62316 -31.69315 -30.96003 -27.49367 -27.31495 -26.86779 -24.00995 -23.50921 -22.53253 -21.47574 -19.86892 -19.03636 -18.85405 -18.60725 -17.35690 -17.10084 -16.92237 -16.16992 -15.76522 -15.52761 -15.18106 -15.12604 -14.95179 -14.67415 -14.63486 -14.52280 -14.16367 -13.92230 -13.88728 -13.60753 -13.28962 -13.00758 -12.82398 -12.63415 -12.45915 -12.29091 -12.15818 -12.00963 -11.90937 -11.77182 -11.64915 -11.52099 -11.03971 -10.22848 -9.97471 -9.23182 -8.74577 -7.70038 -4.98072 0.15738 0.22612 1.15073 1.48645 1.54442 1.58296 1.74600 2.48354 2.55043 2.66673 3.38768 3.50268 3.71865 3.74016 3.77465 3.86921 4.10822 4.22570 4.46004 4.51849 4.57746 4.68823 4.87070 4.91554 4.96430 5.01179 5.09829 5.16176 5.24931 5.27838 5.52326 5.56265 5.57502 5.80696 5.94212 6.05165 6.23852 6.46094 7.31776 8.01788 8.42306 9.31910 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.006634 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.377155 B = 4219.716573 C = 6408.452485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 C 0.176 3.824 4 N -0.600 5.600 5 C -0.232 4.232 6 H 0.082 0.918 7 C -0.053 4.053 8 N -0.912 5.912 9 Si 0.935 3.065 10 H -0.302 1.302 11 H -0.304 1.304 12 H -0.266 1.266 13 C 0.193 3.807 14 C -0.107 4.107 15 C -0.075 4.075 16 C -0.065 4.065 17 Cl -0.066 7.066 18 C -0.081 4.081 19 C -0.190 4.190 20 C 0.117 3.883 21 O -0.313 6.313 22 C 0.403 3.597 23 F -0.204 7.204 24 F -0.210 7.210 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.012 0.988 32 H 0.241 0.759 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.144 0.856 38 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 6.048 -10.659 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.153 4.153 3 C 0.051 3.949 4 N -0.320 5.320 5 C -0.362 4.362 6 H 0.100 0.900 7 C -0.248 4.248 8 N -0.560 5.560 9 Si 0.766 3.234 10 H -0.231 1.231 11 H -0.232 1.232 12 H -0.190 1.190 13 C 0.066 3.934 14 C -0.111 4.111 15 C -0.095 4.095 16 C -0.092 4.092 17 Cl -0.037 7.037 18 C -0.100 4.100 19 C -0.209 4.209 20 C 0.072 3.928 21 O -0.229 6.229 22 C 0.313 3.687 23 F -0.186 7.186 24 F -0.192 7.192 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.163 0.837 36 H 0.175 0.825 37 H 0.162 0.838 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 6.494 5.906 -10.528 13.708 hybrid contribution 0.085 0.817 0.970 1.271 sum 6.579 6.723 -9.558 13.411 Atomic orbital electron populations 1.21506 0.96301 1.00414 1.00302 1.21806 0.94876 0.99202 0.99374 1.20749 0.82181 0.94968 0.97042 1.44304 1.01837 1.83853 1.01966 1.19577 0.92561 1.40239 0.83828 0.89999 1.25215 0.98147 1.02181 0.99211 1.70325 1.15799 1.43827 1.26069 0.85707 0.78572 0.78522 0.80562 1.23058 1.23199 1.19013 1.19632 0.96125 0.90015 0.87590 1.20399 0.94529 1.00055 0.96070 1.20894 0.98559 0.95569 0.94460 1.20857 0.97606 0.96341 0.94410 1.98341 1.67882 1.93042 1.44436 1.20955 0.93571 0.99842 0.95651 1.21555 1.03922 0.95936 0.99475 1.18927 0.92071 0.94073 0.87680 1.86812 1.46415 1.42797 1.46910 1.24072 0.80146 0.76405 0.88063 1.93061 1.69704 1.94073 1.61753 1.93063 1.82947 1.51948 1.91277 0.93082 0.93171 0.94467 0.95425 0.92419 0.92296 0.96932 0.94953 0.92204 0.92204 0.83741 0.82542 0.83800 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.91 71.98 0.71 -4.00 16 2 C -0.11 -4.91 5.72 30.60 0.18 -4.73 16 3 C 0.18 8.17 4.90 86.38 0.42 8.59 16 4 N -0.60 -28.01 2.52 -706.33 -1.78 -29.79 16 5 C -0.23 -11.87 9.24 84.03 0.78 -11.09 16 6 H 0.08 4.06 6.77 -2.91 -0.02 4.04 16 7 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 8 N -0.91 -50.36 8.69 21.65 0.19 -50.17 16 9 Si 0.94 43.69 29.62 68.60 2.03 45.72 16 10 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 C 0.19 7.47 5.49 85.63 0.47 7.94 16 14 C -0.11 -3.75 5.47 -19.77 -0.11 -3.86 16 15 C -0.08 -2.34 9.45 22.28 0.21 -2.13 16 16 C -0.07 -1.84 6.32 22.33 0.14 -1.70 16 17 Cl -0.07 -1.60 28.95 -2.72 -0.08 -1.68 16 18 C -0.08 -2.18 9.82 22.28 0.22 -1.96 16 19 C -0.19 -5.66 8.26 22.36 0.18 -5.48 16 20 C 0.12 4.01 6.46 22.50 0.15 4.15 16 21 O -0.31 -10.50 8.04 -92.61 -0.74 -11.24 16 22 C 0.40 10.12 5.98 113.37 0.68 10.80 16 23 F -0.20 -4.95 15.60 44.97 0.70 -4.25 16 24 F -0.21 -6.08 15.56 44.97 0.70 -5.38 16 25 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.10 8.09 -2.39 -0.02 1.09 16 29 H 0.06 2.95 6.56 -2.39 -0.02 2.93 16 30 H 0.06 3.17 5.74 -2.39 -0.01 3.15 16 31 H 0.01 0.54 8.12 -2.39 -0.02 0.52 16 32 H 0.24 13.28 8.31 -92.71 -0.77 12.51 16 33 H 0.06 2.13 7.92 -2.39 -0.02 2.11 16 34 H 0.06 2.34 7.71 -2.39 -0.02 2.32 16 35 H 0.14 4.11 8.04 -2.91 -0.02 4.08 16 36 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.14 3.94 5.10 -2.91 -0.01 3.92 16 38 H 0.22 3.53 8.14 -2.38 -0.02 3.51 16 Total: -1.00 -59.53 335.20 6.55 -52.98 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.09 Total: 9.69 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.44 Total: -5.88 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -1.59 Total: -79.96 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.74 Total: -11.24 kcal Atomic # 9 Polarization: -11.03 SS G_CDS: 1.40 Total: -9.63 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -59.53 6.55 -52.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194968381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.247 kcal (2) G-P(sol) polarization free energy of solvation -59.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds