Wall clock time and date at job start Tue Mar 31 2020 13:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46985 * 2 1 4 4 C 1.36900 * 119.99864 * 94.98149 * 3 2 1 5 5 H 1.08001 * 119.99493 * 210.11244 * 4 3 2 6 6 C 1.39024 * 120.00139 * 30.10816 * 4 3 2 7 7 N 1.31383 * 119.99770 * 27.24125 * 6 4 3 8 8 Si 1.86797 * 120.00086 * 207.24140 * 6 4 3 9 9 H 1.48498 * 109.47317 * 94.99585 * 8 6 4 10 10 H 1.48496 * 109.47380 * 214.99867 * 8 6 4 11 11 H 1.48498 * 109.46883 * 334.99838 * 8 6 4 12 12 C 1.34776 * 119.99620 * 274.97817 * 3 2 1 13 13 O 1.21626 * 119.99192 * 185.39208 * 12 3 2 14 14 C 1.47546 * 120.00622 * 5.38855 * 12 3 2 15 15 C 1.41576 * 126.45474 * 178.90754 * 14 12 3 16 16 C 1.35337 * 105.56056 * 180.02562 * 15 14 12 17 17 N 1.35868 * 107.13753 * 0.02562 * 16 15 14 18 18 C 1.40121 * 124.95319 * 180.02562 * 17 16 15 19 19 C 1.38864 * 120.05150 * 359.71199 * 18 17 16 20 20 C 1.38103 * 119.93944 * 179.77004 * 19 18 17 21 21 C 1.38397 * 120.05567 * 0.51365 * 20 19 18 22 22 Cl 1.73604 * 119.94267 * 179.76263 * 21 20 19 23 23 C 1.38399 * 120.11264 * 359.74497 * 21 20 19 24 24 C 1.38096 * 120.05499 * 359.97438 * 23 21 20 25 25 N 1.28484 * 110.09429 * 359.72156 * 17 16 15 26 26 H 1.08995 * 109.47565 * 60.00209 * 1 2 3 27 27 H 1.08999 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47151 * 299.99384 * 1 2 3 29 29 H 1.09006 * 109.46829 * 240.00182 * 2 1 3 30 30 H 1.08998 * 109.47213 * 120.00170 * 2 1 3 31 31 H 0.97003 * 119.99476 * 179.97438 * 7 6 4 32 32 H 1.08007 * 127.21364 * 0.04271 * 15 14 12 33 33 H 1.08000 * 126.42689 * 179.97438 * 16 15 14 34 34 H 1.07994 * 120.03119 * 0.02775 * 19 18 17 35 35 H 1.08000 * 119.97358 * 180.23566 * 20 19 18 36 36 H 1.08001 * 119.97264 * 179.97438 * 23 21 20 37 37 H 1.07996 * 120.03057 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3435 1.9923 1.1811 5 1 2.2315 3.0614 1.2847 6 6 2.8179 1.2365 2.2472 7 7 3.4518 0.1080 2.0217 8 14 2.5541 1.8255 4.0002 9 1 1.3311 1.1927 4.5562 10 1 3.7268 1.4502 4.8303 11 1 2.3945 3.3018 4.0075 12 6 2.1474 2.0503 -1.1628 13 8 2.6442 3.1604 -1.1737 14 6 1.6861 1.4361 -2.4226 15 6 1.7350 2.0211 -3.7109 16 6 1.2070 1.0986 -4.5488 17 7 0.8627 0.0227 -3.7939 18 6 0.2807 -1.1519 -4.2887 19 6 0.0089 -1.2755 -5.6449 20 6 -0.5604 -2.4361 -6.1308 21 6 -0.8699 -3.4712 -5.2659 22 17 -1.5912 -4.9264 -5.8790 23 6 -0.6049 -3.3484 -3.9130 24 6 -0.0303 -2.1922 -3.4230 25 7 1.1545 0.2368 -2.5611 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.7831 -0.4191 2.7656 32 1 2.1144 2.9984 -3.9706 33 1 1.0820 1.1993 -5.6168 34 1 0.2464 -0.4664 -6.3196 35 1 -0.7685 -2.5343 -7.1860 36 1 -0.8477 -4.1574 -3.2400 37 1 0.1766 -2.0969 -2.3674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339676464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:28 Heat of formation + Delta-G solvation = 92.073579 kcal Electronic energy + Delta-G solvation = -23937.805335 eV Core-core repulsion = 20323.069379 eV Total energy + Delta-G solvation = -3614.735956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.55379 -39.45848 -38.17183 -36.77375 -34.98189 -33.36402 -32.11079 -31.69407 -30.26253 -29.42788 -29.04340 -25.58226 -23.75231 -23.53395 -22.31166 -21.37828 -20.73691 -19.09333 -18.28798 -16.85366 -16.81980 -16.07410 -15.82270 -15.52754 -15.05059 -14.75741 -14.18696 -13.92863 -13.82962 -13.50392 -13.41526 -13.11368 -12.75773 -12.59147 -12.45465 -11.91630 -11.90796 -11.79298 -11.52277 -11.15014 -11.12088 -10.96061 -10.50362 -10.35544 -10.27971 -9.82078 -9.76443 -9.47728 -9.06044 -8.76242 -8.60330 -8.11915 -7.54852 -6.41611 -3.90941 0.47516 0.88804 1.79643 2.21012 2.55028 2.58618 3.18311 3.25150 3.30545 3.37440 4.09937 4.27609 4.39097 4.43177 4.64783 4.78372 4.83575 4.97574 5.07908 5.17943 5.25488 5.57344 5.60538 5.70968 5.85545 5.92751 6.04661 6.10667 6.19672 6.26379 6.41777 6.47375 6.74156 6.83727 7.00640 7.13751 7.40967 7.55808 8.15375 8.27271 8.51492 9.14135 9.37620 10.00349 10.60534 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.003339 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.987357 B = 8383.281143 C = 9575.690047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.093 3.907 3 N -0.410 5.410 4 C -0.307 4.307 5 H 0.099 0.901 6 C 0.038 3.962 7 N -0.851 5.851 8 Si 0.918 3.082 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.512 3.488 13 O -0.580 6.580 14 C 0.040 3.960 15 C -0.174 4.174 16 C -0.030 4.030 17 N -0.260 5.260 18 C 0.164 3.836 19 C -0.127 4.127 20 C -0.086 4.086 21 C -0.049 4.049 22 Cl -0.069 7.069 23 C -0.085 4.085 24 C -0.103 4.103 25 N -0.263 5.263 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.270 0.730 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 -9.475 -15.100 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.031 4.031 3 N -0.127 5.127 4 C -0.435 4.435 5 H 0.117 0.883 6 C -0.168 4.168 7 N -0.488 5.488 8 Si 0.744 3.256 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.299 3.701 13 O -0.464 6.464 14 C -0.123 4.123 15 C -0.202 4.202 16 C -0.168 4.168 17 N -0.040 5.040 18 C 0.072 3.928 19 C -0.148 4.148 20 C -0.105 4.105 21 C -0.077 4.077 22 Cl -0.040 7.040 23 C -0.104 4.104 24 C -0.123 4.123 25 N -0.094 5.094 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.180 0.820 33 H 0.195 0.805 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.545 -10.191 -14.453 20.096 hybrid contribution 0.080 0.645 0.192 0.678 sum -9.465 -9.546 -14.261 19.598 Atomic orbital electron populations 1.22033 0.98053 0.99898 1.00912 1.21827 0.92192 0.84659 1.04418 1.43533 1.52603 1.12119 1.04441 1.19607 1.42235 0.94721 0.86957 0.88319 1.25359 0.94332 0.96390 1.00690 1.70005 1.30705 1.15388 1.32704 0.86044 0.77995 0.79715 0.81841 1.20202 1.20914 1.19048 1.16945 0.84568 0.87386 0.81159 1.90627 1.49455 1.21000 1.85287 1.22857 1.01643 0.90940 0.96850 1.21866 1.05491 1.01414 0.91416 1.22874 1.06351 0.88577 0.98985 1.42950 1.44069 1.11605 1.05419 1.17725 0.97092 0.85148 0.92871 1.20769 1.01981 0.99119 0.92920 1.20810 0.98268 0.91348 1.00060 1.20956 1.02976 0.89635 0.94089 1.98375 1.81902 1.36003 1.87758 1.20986 0.97871 0.98048 0.93497 1.21033 0.98646 0.91281 1.01354 1.74116 1.18150 1.18937 0.98222 0.93553 0.93596 0.93329 0.91092 0.87514 0.91963 0.81952 0.80537 0.84105 0.84036 0.83899 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.65 37.16 0.36 -2.62 16 2 C 0.09 2.16 5.26 -4.04 -0.02 2.13 16 3 N -0.41 -10.88 2.57 -115.98 -0.30 -11.17 16 4 C -0.31 -8.60 8.99 -15.00 -0.13 -8.73 16 5 H 0.10 2.87 7.72 -52.49 -0.41 2.47 16 6 C 0.04 1.01 4.83 -17.45 -0.08 0.93 16 7 N -0.85 -22.85 11.39 55.50 0.63 -22.22 16 8 Si 0.92 20.29 29.63 -169.99 -5.04 15.25 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 C 0.51 13.46 7.59 -12.47 -0.09 13.36 16 13 O -0.58 -16.88 16.74 5.25 0.09 -16.79 16 14 C 0.04 0.85 6.54 -82.77 -0.54 0.31 16 15 C -0.17 -3.06 10.80 -39.34 -0.42 -3.49 16 16 C -0.03 -0.42 10.78 -16.80 -0.18 -0.60 16 17 N -0.26 -4.03 3.52 -10.55 -0.04 -4.07 16 18 C 0.16 2.07 6.66 -83.60 -0.56 1.52 16 19 C -0.13 -1.20 9.43 -39.40 -0.37 -1.57 16 20 C -0.09 -0.72 9.82 -39.57 -0.39 -1.10 16 21 C -0.05 -0.46 6.32 -39.46 -0.25 -0.71 16 22 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 23 C -0.08 -0.84 9.82 -39.57 -0.39 -1.23 16 24 C -0.10 -1.25 9.59 -39.40 -0.38 -1.63 16 25 N -0.26 -5.01 6.11 33.41 0.20 -4.81 16 26 H 0.05 0.92 6.51 -51.93 -0.34 0.58 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.61 5.70 -51.93 -0.30 1.31 16 30 H 0.11 2.66 5.26 -51.93 -0.27 2.39 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 32 H 0.16 2.63 8.06 -52.48 -0.42 2.20 16 33 H 0.18 1.60 6.96 -52.49 -0.37 1.23 16 34 H 0.14 0.99 6.64 -52.49 -0.35 0.64 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.15 2.01 7.64 -52.49 -0.40 1.61 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -32.15 331.51 -8.09 -40.24 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.68 Total: 4.09 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -3.46 Total: -3.42 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.50 Total: -42.27 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.09 Total: -16.79 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.04 Total: 15.25 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.15 -8.09 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339676464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.312 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds