Wall clock time and date at job start Tue Mar 31 2020 13:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46985 * 2 1 4 4 C 1.36900 * 119.99864 * 94.98149 * 3 2 1 5 5 H 1.08001 * 119.99493 * 210.11244 * 4 3 2 6 6 C 1.39024 * 120.00139 * 30.10816 * 4 3 2 7 7 N 1.31383 * 119.99770 * 27.24125 * 6 4 3 8 8 Si 1.86797 * 120.00086 * 207.24140 * 6 4 3 9 9 H 1.48498 * 109.47317 * 94.99585 * 8 6 4 10 10 H 1.48496 * 109.47380 * 214.99867 * 8 6 4 11 11 H 1.48498 * 109.46883 * 334.99838 * 8 6 4 12 12 C 1.34776 * 119.99620 * 274.97817 * 3 2 1 13 13 O 1.21626 * 119.99192 * 185.39208 * 12 3 2 14 14 C 1.47546 * 120.00622 * 5.38855 * 12 3 2 15 15 C 1.41576 * 126.45474 * 178.90754 * 14 12 3 16 16 C 1.35337 * 105.56056 * 180.02562 * 15 14 12 17 17 N 1.35868 * 107.13753 * 0.02562 * 16 15 14 18 18 C 1.40121 * 124.95319 * 180.02562 * 17 16 15 19 19 C 1.38864 * 120.05150 * 359.71199 * 18 17 16 20 20 C 1.38103 * 119.93944 * 179.77004 * 19 18 17 21 21 C 1.38397 * 120.05567 * 0.51365 * 20 19 18 22 22 Cl 1.73604 * 119.94267 * 179.76263 * 21 20 19 23 23 C 1.38399 * 120.11264 * 359.74497 * 21 20 19 24 24 C 1.38096 * 120.05499 * 359.97438 * 23 21 20 25 25 N 1.28484 * 110.09429 * 359.72156 * 17 16 15 26 26 H 1.08995 * 109.47565 * 60.00209 * 1 2 3 27 27 H 1.08999 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47151 * 299.99384 * 1 2 3 29 29 H 1.09006 * 109.46829 * 240.00182 * 2 1 3 30 30 H 1.08998 * 109.47213 * 120.00170 * 2 1 3 31 31 H 0.97003 * 119.99476 * 179.97438 * 7 6 4 32 32 H 1.08007 * 127.21364 * 0.04271 * 15 14 12 33 33 H 1.08000 * 126.42689 * 179.97438 * 16 15 14 34 34 H 1.07994 * 120.03119 * 0.02775 * 19 18 17 35 35 H 1.08000 * 119.97358 * 180.23566 * 20 19 18 36 36 H 1.08001 * 119.97264 * 179.97438 * 23 21 20 37 37 H 1.07996 * 120.03057 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3435 1.9923 1.1811 5 1 2.2315 3.0614 1.2847 6 6 2.8179 1.2365 2.2472 7 7 3.4518 0.1080 2.0217 8 14 2.5541 1.8255 4.0002 9 1 1.3311 1.1927 4.5562 10 1 3.7268 1.4502 4.8303 11 1 2.3945 3.3018 4.0075 12 6 2.1474 2.0503 -1.1628 13 8 2.6442 3.1604 -1.1737 14 6 1.6861 1.4361 -2.4226 15 6 1.7350 2.0211 -3.7109 16 6 1.2070 1.0986 -4.5488 17 7 0.8627 0.0227 -3.7939 18 6 0.2807 -1.1519 -4.2887 19 6 0.0089 -1.2755 -5.6449 20 6 -0.5604 -2.4361 -6.1308 21 6 -0.8699 -3.4712 -5.2659 22 17 -1.5912 -4.9264 -5.8790 23 6 -0.6049 -3.3484 -3.9130 24 6 -0.0303 -2.1922 -3.4230 25 7 1.1545 0.2368 -2.5611 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.7831 -0.4191 2.7656 32 1 2.1144 2.9984 -3.9706 33 1 1.0820 1.1993 -5.6168 34 1 0.2464 -0.4664 -6.3196 35 1 -0.7685 -2.5343 -7.1860 36 1 -0.8477 -4.1574 -3.2400 37 1 0.1766 -2.0969 -2.3674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339676464.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:27 Heat of formation + Delta-G solvation = 73.786703 kcal Electronic energy + Delta-G solvation = -23938.598313 eV Core-core repulsion = 20323.069379 eV Total energy + Delta-G solvation = -3615.528935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.84738 -40.47550 -39.93066 -37.51564 -36.99028 -34.60500 -33.93011 -32.62914 -31.49355 -31.20116 -30.19675 -27.42942 -25.17554 -24.45105 -23.96369 -22.73278 -21.84267 -20.66172 -19.43109 -18.79865 -17.75871 -17.70687 -17.21047 -16.89694 -16.36991 -16.05604 -15.65309 -15.44874 -14.94377 -14.76544 -14.62995 -14.48920 -14.37057 -13.97283 -13.66075 -13.50066 -13.30188 -12.89884 -12.73337 -12.70501 -12.64427 -12.31360 -12.12699 -12.00237 -11.85056 -11.49965 -10.98589 -10.80292 -10.65985 -10.22858 -10.15488 -9.59887 -9.18771 -8.42932 -6.03683 -0.44176 0.14029 0.84022 1.05430 1.26716 1.40436 1.43736 1.45477 1.55572 2.26671 2.45707 2.55959 3.00085 3.07359 3.32760 3.68314 3.74509 3.89977 4.06352 4.10568 4.30310 4.42300 4.50152 4.66270 4.68054 4.76274 4.81812 4.85947 4.87729 5.06806 5.09038 5.14274 5.24735 5.35773 5.44085 5.47644 5.58805 6.02160 6.13808 6.45792 6.90109 7.11247 7.38247 7.99846 8.59364 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.003339 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.987357 B = 8383.281143 C = 9575.690047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.100 3.900 3 N -0.426 5.426 4 C -0.350 4.350 5 H 0.071 0.929 6 C 0.008 3.992 7 N -0.875 5.875 8 Si 0.987 3.013 9 H -0.260 1.260 10 H -0.273 1.273 11 H -0.271 1.271 12 C 0.500 3.500 13 O -0.627 6.627 14 C -0.007 4.007 15 C -0.199 4.199 16 C 0.005 3.995 17 N -0.249 5.249 18 C 0.125 3.875 19 C -0.108 4.108 20 C -0.079 4.079 21 C -0.045 4.045 22 Cl -0.059 7.059 23 C -0.088 4.088 24 C -0.115 4.115 25 N -0.269 5.269 26 H 0.042 0.958 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.278 0.722 32 H 0.166 0.834 33 H 0.237 0.763 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.156 0.844 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.213 -11.535 -17.699 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 N -0.142 5.142 4 C -0.478 4.478 5 H 0.089 0.911 6 C -0.197 4.197 7 N -0.512 5.512 8 Si 0.809 3.191 9 H -0.185 1.185 10 H -0.198 1.198 11 H -0.196 1.196 12 C 0.289 3.711 13 O -0.514 6.514 14 C -0.167 4.167 15 C -0.227 4.227 16 C -0.134 4.134 17 N -0.031 5.031 18 C 0.035 3.965 19 C -0.128 4.128 20 C -0.098 4.098 21 C -0.072 4.072 22 Cl -0.030 7.030 23 C -0.107 4.107 24 C -0.135 4.135 25 N -0.102 5.102 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.184 0.816 33 H 0.254 0.746 34 H 0.192 0.808 35 H 0.192 0.808 36 H 0.174 0.826 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.273 -12.309 -17.045 23.856 hybrid contribution 0.524 1.049 0.750 1.392 sum -10.749 -11.260 -16.295 22.536 Atomic orbital electron populations 1.21877 0.95557 1.01726 1.00137 1.21806 0.94152 0.82930 1.03410 1.43774 1.52990 1.13134 1.04301 1.19559 1.45174 0.94130 0.88953 0.91068 1.26180 0.93015 0.96345 1.04138 1.70059 1.30647 1.16233 1.34234 0.85036 0.78631 0.78875 0.76520 1.18496 1.19792 1.19559 1.17633 0.83722 0.86973 0.82726 1.90548 1.51415 1.22931 1.86535 1.22246 1.05414 0.92895 0.96165 1.22027 1.07419 1.02769 0.90441 1.23578 1.02822 0.86218 1.00799 1.43211 1.42528 1.12805 1.04536 1.18112 0.99490 0.84429 0.94495 1.21130 0.99958 1.00172 0.91537 1.21200 0.96814 0.90273 1.01469 1.21164 1.01874 0.90198 0.93997 1.98391 1.81620 1.35508 1.87500 1.21089 0.97595 0.97651 0.94354 1.20997 0.99504 0.92311 1.00710 1.73929 1.17893 1.17827 1.00572 0.93852 0.90330 0.94420 0.90946 0.89406 0.91182 0.81597 0.74635 0.80811 0.80797 0.82641 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 9.65 71.98 0.69 -4.76 16 2 C 0.10 4.86 5.26 86.38 0.45 5.31 16 3 N -0.43 -24.02 2.57 -639.10 -1.64 -25.66 16 4 C -0.35 -20.89 8.99 84.09 0.76 -20.14 16 5 H 0.07 4.51 7.72 -2.91 -0.02 4.48 16 6 C 0.01 0.41 4.83 84.95 0.41 0.82 16 7 N -0.88 -48.40 11.39 21.68 0.25 -48.16 16 8 Si 0.99 42.69 29.63 68.60 2.03 44.72 16 9 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 C 0.50 28.12 7.59 86.70 0.66 28.78 16 13 O -0.63 -39.34 16.74 -4.11 -0.07 -39.41 16 14 C -0.01 -0.31 6.54 42.41 0.28 -0.04 16 15 C -0.20 -6.98 10.80 22.42 0.24 -6.73 16 16 C 0.00 0.12 10.78 83.40 0.90 1.02 16 17 N -0.25 -7.28 3.52 -187.29 -0.66 -7.94 16 18 C 0.13 2.82 6.66 38.12 0.25 3.07 16 19 C -0.11 -1.50 9.43 22.39 0.21 -1.29 16 20 C -0.08 -0.92 9.82 22.28 0.22 -0.70 16 21 C -0.05 -0.67 6.32 22.35 0.14 -0.53 16 22 Cl -0.06 -0.81 28.95 -2.72 -0.08 -0.89 16 23 C -0.09 -1.53 9.82 22.27 0.22 -1.31 16 24 C -0.12 -2.62 9.59 22.39 0.21 -2.40 16 25 N -0.27 -10.35 6.11 -48.20 -0.29 -10.64 16 26 H 0.04 1.76 6.51 -2.39 -0.02 1.75 16 27 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.07 3.43 5.70 -2.38 -0.01 3.42 16 30 H 0.09 4.57 5.26 -2.39 -0.01 4.55 16 31 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.17 5.48 8.06 -2.91 -0.02 5.46 16 33 H 0.24 2.80 6.96 -2.91 -0.02 2.78 16 34 H 0.17 1.24 6.64 -2.91 -0.02 1.22 16 35 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.13 3.52 7.64 -2.91 -0.02 3.50 16 Total: -1.00 -76.95 331.51 6.30 -70.65 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.12 Total: 16.23 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.65 Total: 1.10 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -2.35 Total: -92.40 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.07 Total: -39.41 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -76.95 6.30 -70.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339676464.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.434 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds