Wall clock time and date at job start Tue Mar 31 2020 13:11:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34953 * 126.03725 * 2 1
4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1
5 5 C 1.39863 * 107.92527 * 359.64076 * 4 3 2
6 6 C 1.50703 * 125.90145 * 180.14385 * 5 4 3
7 7 H 1.09000 * 109.46707 * 245.23156 * 6 5 4
8 8 N 1.46497 * 109.46853 * 5.23279 * 6 5 4
9 9 C 1.34772 * 120.00099 * 274.99481 * 8 6 5
10 10 O 1.21695 * 119.99919 * 0.02562 * 9 8 6
11 11 C 1.46369 * 120.00424 * 180.02562 * 9 8 6
12 12 H 1.08004 * 119.99773 * 0.02562 * 11 9 8
13 13 C 1.40051 * 120.00467 * 180.02562 * 11 9 8
14 14 N 1.30664 * 119.99846 * 359.97438 * 13 11 9
15 15 Si 1.86806 * 120.00152 * 179.97438 * 13 11 9
16 16 H 1.48496 * 109.46962 * 0.02562 * 15 13 11
17 17 H 1.48498 * 109.46846 * 119.99876 * 15 13 11
18 18 H 1.48490 * 109.46930 * 240.00067 * 15 13 11
19 19 C 1.50700 * 109.47162 * 125.23311 * 6 5 4
20 20 C 1.38243 * 119.98429 * 279.73015 * 19 6 5
21 21 C 1.38219 * 120.00983 * 179.72726 * 20 19 6
22 22 C 1.38351 * 119.98642 * 0.54343 * 21 20 19
23 23 Cl 1.73603 * 120.01209 * 179.74687 * 22 21 20
24 24 C 1.38346 * 119.97460 * 359.72683 * 22 21 20
25 25 C 1.38213 * 119.98725 * 0.02562 * 24 22 21
26 26 N 1.30837 * 108.19940 * 0.36269 * 5 4 3
27 27 H 1.08999 * 109.47001 * 90.00027 * 1 2 3
28 28 H 1.09001 * 109.47118 * 210.00454 * 1 2 3
29 29 H 1.08997 * 109.46734 * 329.99965 * 1 2 3
30 30 H 1.08002 * 126.12372 * 359.93597 * 3 2 1
31 31 H 1.08008 * 126.03698 * 179.76435 * 4 3 2
32 32 H 0.97008 * 120.00222 * 95.00203 * 8 6 5
33 33 H 0.97001 * 120.00450 * 180.02562 * 14 13 11
34 34 H 1.08001 * 119.99458 * 359.97438 * 20 19 6
35 35 H 1.08001 * 120.00305 * 180.26730 * 21 20 19
36 36 H 1.08002 * 120.00650 * 179.97438 * 24 22 21
37 37 H 1.07996 * 119.99670 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2590 1.0913 0.0000
4 6 3.5437 0.6665 -0.0046
5 6 3.5347 -0.7321 0.0008
6 6 4.7497 -1.6236 0.0013
7 1 4.7857 -2.1892 -0.9297
8 7 5.9574 -0.8030 0.1213
9 6 6.5156 -0.2607 -0.9790
10 8 6.0162 -0.4522 -2.0721
11 6 7.7225 0.5588 -0.8593
12 1 8.1660 0.7284 0.1108
13 6 8.3023 1.1228 -2.0026
14 7 7.7661 0.9172 -3.1762
15 14 9.8422 2.1692 -1.8496
16 1 10.2477 2.2476 -0.4232
17 1 10.9380 1.5559 -2.6422
18 1 9.5653 3.5351 -2.3618
19 6 4.6726 -2.5772 1.1657
20 6 5.0324 -2.1528 2.4312
21 6 4.9565 -3.0253 3.5006
22 6 4.5310 -4.3267 3.3023
23 17 4.4417 -5.4250 4.6437
24 6 4.1764 -4.7524 2.0346
25 6 4.2478 -3.8776 0.9669
26 7 2.2892 -1.1327 0.0005
27 1 -0.3633 0.0000 -1.0277
28 1 -0.3633 -0.8899 0.5139
29 1 -0.3633 0.8900 0.5138
30 1 1.9281 2.1194 -0.0010
31 1 4.4211 1.2963 -0.0095
32 1 6.3553 -0.6501 0.9926
33 1 8.1678 1.3075 -3.9682
34 1 5.3690 -1.1382 2.5851
35 1 5.2335 -2.6924 4.4899
36 1 3.8446 -5.7684 1.8791
37 1 3.9707 -4.2096 -0.0226
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000368517755.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:59
Heat of formation + Delta-G solvation = 63.945836 kcal
Electronic energy + Delta-G solvation = -23717.135704 eV
Core-core repulsion = 20101.180037 eV
Total energy + Delta-G solvation = -3615.955667 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 319.083 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.82296 -39.34235 -37.37105 -36.42538 -34.34815 -32.56560 -32.20756 -31.07205
-30.47800 -29.52621 -27.44733 -26.06319 -24.63246 -22.80869 -21.56566 -20.67063
-20.04275 -18.84725 -17.72636 -16.80904 -16.61820 -15.59135 -15.32766 -15.14296
-14.97859 -14.33620 -14.12245 -13.88281 -13.49463 -13.39265 -13.34526 -13.07367
-12.61256 -12.48198 -12.18497 -12.11781 -11.79306 -11.52518 -11.26969 -11.20182
-11.05232 -10.98551 -10.75461 -10.48147 -10.23938 -10.15012 -8.94391 -8.89332
-8.79949 -8.49846 -8.06698 -7.73614 -7.61327 -6.20463 -4.66267 1.22129
1.39612 2.13738 2.28057 2.84351 3.12462 3.21201 3.25085 3.32270
3.72424 4.08986 4.51930 4.63383 4.83128 4.88149 4.94188 4.97737
5.19746 5.22109 5.35481 5.41811 5.46272 5.51078 5.74173 5.87138
5.94695 6.05945 6.19735 6.28366 6.30447 6.40253 6.58223 6.73084
6.87796 7.11813 7.40545 7.42176 7.83406 7.96482 8.19725 8.30027
9.01097 9.46527 10.57474 10.75706
Molecular weight = 319.08amu
Principal moments of inertia in cm(-1)
A = 0.010385 B = 0.004287 C = 0.003273
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2695.515265 B = 6529.420508 C = 8552.776898
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.108 3.892
2 N -0.387 5.387
3 C 0.035 3.965
4 C -0.229 4.229
5 C 0.082 3.918
6 C 0.272 3.728
7 H 0.103 0.897
8 N -0.752 5.752
9 C 0.557 3.443
10 O -0.571 6.571
11 C -0.543 4.543
12 H 0.069 0.931
13 C 0.089 3.911
14 N -0.765 5.765
15 Si 0.906 3.094
16 H -0.264 1.264
17 H -0.277 1.277
18 H -0.277 1.277
19 C -0.060 4.060
20 C -0.094 4.094
21 C -0.111 4.111
22 C -0.040 4.040
23 Cl -0.083 7.083
24 C -0.110 4.110
25 C -0.087 4.087
26 N -0.298 5.298
27 H 0.068 0.932
28 H 0.083 0.917
29 H 0.081 0.919
30 H 0.167 0.833
31 H 0.150 0.850
32 H 0.383 0.617
33 H 0.268 0.732
34 H 0.133 0.867
35 H 0.131 0.869
36 H 0.131 0.869
37 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.213 -4.341 11.807 16.203
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.034 4.034
2 N -0.170 5.170
3 C -0.110 4.110
4 C -0.258 4.258
5 C -0.086 4.086
6 C 0.163 3.837
7 H 0.121 0.879
8 N -0.407 5.407
9 C 0.361 3.639
10 O -0.453 6.453
11 C -0.580 4.580
12 H 0.087 0.913
13 C -0.131 4.131
14 N -0.394 5.394
15 Si 0.730 3.270
16 H -0.187 1.187
17 H -0.202 1.202
18 H -0.202 1.202
19 C -0.061 4.061
20 C -0.113 4.113
21 C -0.129 4.129
22 C -0.066 4.066
23 Cl -0.055 7.055
24 C -0.129 4.129
25 C -0.106 4.106
26 N -0.121 5.121
27 H 0.086 0.914
28 H 0.102 0.898
29 H 0.099 0.901
30 H 0.185 0.815
31 H 0.167 0.833
32 H 0.216 0.784
33 H 0.078 0.922
34 H 0.151 0.849
35 H 0.148 0.852
36 H 0.149 0.851
37 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -11.521 -5.511 10.883 16.779
hybrid contribution 1.296 1.401 0.525 1.979
sum -10.225 -4.110 11.408 15.861
Atomic orbital electron populations
1.21693 0.75223 1.03726 1.02768 1.48395 1.05996 1.03958 1.58689
1.22418 0.91347 0.93039 1.04179 1.21408 0.96718 0.94708 1.12958
1.22829 0.92847 0.94666 0.98221 1.17480 0.82218 0.88065 0.95957
0.87924 1.46274 1.27007 1.56319 1.11124 1.18238 0.84332 0.79369
0.81931 1.90630 1.65199 1.63307 1.26171 1.20875 1.10275 1.32476
0.94329 0.91315 1.25678 0.97441 0.95228 0.94749 1.70024 1.35946
1.34890 0.98529 0.86348 0.81707 0.79722 0.79194 1.18747 1.20208
1.20224 1.20069 0.96963 0.94344 0.94747 1.20964 0.98940 0.99874
0.91513 1.20963 1.00470 0.91679 0.99814 1.20870 1.05382 0.91597
0.88757 1.98347 1.97091 1.63628 1.46413 1.20959 1.00816 1.00402
0.90738 1.20986 0.98190 0.92418 0.99020 1.77195 1.01237 1.07631
1.26066 0.91359 0.89839 0.90085 0.81528 0.83262 0.78375 0.92166
0.84911 0.85150 0.85135 0.84873
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 1.09 11.47 59.85 0.69 1.77 16
2 N -0.39 -6.04 4.01 -68.16 -0.27 -6.32 16
3 C 0.03 0.55 11.49 -17.22 -0.20 0.35 16
4 C -0.23 -4.42 9.87 -40.02 -0.39 -4.81 16
5 C 0.08 1.62 6.40 -82.41 -0.53 1.10 16
6 C 0.27 5.32 2.71 -70.23 -0.19 5.12 16
7 H 0.10 2.26 7.44 -51.93 -0.39 1.87 16
8 N -0.75 -15.93 4.41 -57.49 -0.25 -16.19 16
9 C 0.56 14.96 7.05 -12.99 -0.09 14.87 16
10 O -0.57 -17.74 14.68 5.19 0.08 -17.66 16
11 C -0.54 -14.62 9.54 -35.63 -0.34 -14.96 16
12 H 0.07 1.70 7.85 -52.48 -0.41 1.28 16
13 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16
14 N -0.77 -22.31 11.83 55.55 0.66 -21.66 16
15 Si 0.91 19.58 29.56 -169.99 -5.02 14.56 16
16 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16
17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
19 C -0.06 -0.96 4.91 -104.62 -0.51 -1.48 16
20 C -0.09 -1.35 9.05 -39.59 -0.36 -1.71 16
21 C -0.11 -1.42 9.83 -39.55 -0.39 -1.81 16
22 C -0.04 -0.51 6.32 -39.50 -0.25 -0.76 16
23 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16
24 C -0.11 -1.42 9.83 -39.55 -0.39 -1.81 16
25 C -0.09 -1.27 9.67 -39.59 -0.38 -1.65 16
26 N -0.30 -5.55 12.54 33.67 0.42 -5.13 16
27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.17 1.96 8.06 -52.49 -0.42 1.53 16
31 H 0.15 3.10 7.50 -52.48 -0.39 2.71 16
32 H 0.38 7.14 6.83 -40.82 -0.28 6.86 16
33 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16
34 H 0.13 1.78 6.90 -52.49 -0.36 1.42 16
35 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
37 H 0.13 1.81 8.04 -52.49 -0.42 1.38 16
LS Contribution 342.41 15.07 5.16 5.16
Total: -1.00 -34.66 342.41 -8.10 -42.76
By element:
Atomic # 1 Polarization: 14.33 SS G_CDS: -3.93 Total: 10.40 kcal
Atomic # 6 Polarization: -0.03 SS G_CDS: -3.43 Total: -3.47 kcal
Atomic # 7 Polarization: -49.84 SS G_CDS: 0.55 Total: -49.29 kcal
Atomic # 8 Polarization: -17.74 SS G_CDS: 0.08 Total: -17.66 kcal
Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal
Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -34.66 -8.10 -42.76 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000368517755.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.706 kcal
(2) G-P(sol) polarization free energy of solvation -34.662 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.044 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds