Wall clock time and date at job start Tue Mar 31 2020 13:11:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34953 * 126.03725 * 2 1
4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1
5 5 C 1.39863 * 107.92527 * 359.64076 * 4 3 2
6 6 C 1.50703 * 125.90145 * 180.14385 * 5 4 3
7 7 H 1.09000 * 109.46707 * 245.23156 * 6 5 4
8 8 N 1.46497 * 109.46853 * 5.23279 * 6 5 4
9 9 C 1.34772 * 120.00099 * 274.99481 * 8 6 5
10 10 O 1.21695 * 119.99919 * 0.02562 * 9 8 6
11 11 C 1.46369 * 120.00424 * 180.02562 * 9 8 6
12 12 H 1.08004 * 119.99773 * 0.02562 * 11 9 8
13 13 C 1.40051 * 120.00467 * 180.02562 * 11 9 8
14 14 N 1.30664 * 119.99846 * 359.97438 * 13 11 9
15 15 Si 1.86806 * 120.00152 * 179.97438 * 13 11 9
16 16 H 1.48496 * 109.46962 * 0.02562 * 15 13 11
17 17 H 1.48498 * 109.46846 * 119.99876 * 15 13 11
18 18 H 1.48490 * 109.46930 * 240.00067 * 15 13 11
19 19 C 1.50700 * 109.47162 * 125.23311 * 6 5 4
20 20 C 1.38243 * 119.98429 * 279.73015 * 19 6 5
21 21 C 1.38219 * 120.00983 * 179.72726 * 20 19 6
22 22 C 1.38351 * 119.98642 * 0.54343 * 21 20 19
23 23 Cl 1.73603 * 120.01209 * 179.74687 * 22 21 20
24 24 C 1.38346 * 119.97460 * 359.72683 * 22 21 20
25 25 C 1.38213 * 119.98725 * 0.02562 * 24 22 21
26 26 N 1.30837 * 108.19940 * 0.36269 * 5 4 3
27 27 H 1.08999 * 109.47001 * 90.00027 * 1 2 3
28 28 H 1.09001 * 109.47118 * 210.00454 * 1 2 3
29 29 H 1.08997 * 109.46734 * 329.99965 * 1 2 3
30 30 H 1.08002 * 126.12372 * 359.93597 * 3 2 1
31 31 H 1.08008 * 126.03698 * 179.76435 * 4 3 2
32 32 H 0.97008 * 120.00222 * 95.00203 * 8 6 5
33 33 H 0.97001 * 120.00450 * 180.02562 * 14 13 11
34 34 H 1.08001 * 119.99458 * 359.97438 * 20 19 6
35 35 H 1.08001 * 120.00305 * 180.26730 * 21 20 19
36 36 H 1.08002 * 120.00650 * 179.97438 * 24 22 21
37 37 H 1.07996 * 119.99670 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2590 1.0913 0.0000
4 6 3.5437 0.6665 -0.0046
5 6 3.5347 -0.7321 0.0008
6 6 4.7497 -1.6236 0.0013
7 1 4.7857 -2.1892 -0.9297
8 7 5.9574 -0.8030 0.1213
9 6 6.5156 -0.2607 -0.9790
10 8 6.0162 -0.4522 -2.0721
11 6 7.7225 0.5588 -0.8593
12 1 8.1660 0.7284 0.1108
13 6 8.3023 1.1228 -2.0026
14 7 7.7661 0.9172 -3.1762
15 14 9.8422 2.1692 -1.8496
16 1 10.2477 2.2476 -0.4232
17 1 10.9380 1.5559 -2.6422
18 1 9.5653 3.5351 -2.3618
19 6 4.6726 -2.5772 1.1657
20 6 5.0324 -2.1528 2.4312
21 6 4.9565 -3.0253 3.5006
22 6 4.5310 -4.3267 3.3023
23 17 4.4417 -5.4250 4.6437
24 6 4.1764 -4.7524 2.0346
25 6 4.2478 -3.8776 0.9669
26 7 2.2892 -1.1327 0.0005
27 1 -0.3633 0.0000 -1.0277
28 1 -0.3633 -0.8899 0.5139
29 1 -0.3633 0.8900 0.5138
30 1 1.9281 2.1194 -0.0010
31 1 4.4211 1.2963 -0.0095
32 1 6.3553 -0.6501 0.9926
33 1 8.1678 1.3075 -3.9682
34 1 5.3690 -1.1382 2.5851
35 1 5.2335 -2.6924 4.4899
36 1 3.8446 -5.7684 1.8791
37 1 3.9707 -4.2096 -0.0226
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000368517755.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:58
Heat of formation + Delta-G solvation = 41.179662 kcal
Electronic energy + Delta-G solvation = -23718.122919 eV
Core-core repulsion = 20101.180037 eV
Total energy + Delta-G solvation = -3616.942882 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 319.083 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-42.17093 -40.54485 -39.17848 -37.51339 -35.93290 -34.52101 -33.64603 -32.23472
-31.85739 -30.85520 -29.00259 -27.69546 -26.00218 -23.94738 -22.78074 -22.11685
-21.69171 -20.36070 -19.45139 -18.07649 -17.92479 -17.43714 -16.68758 -16.51255
-16.13273 -15.77217 -15.66605 -15.38828 -14.73308 -14.62619 -14.45268 -14.37826
-14.06258 -13.99303 -13.69134 -13.26257 -13.15276 -13.06188 -12.76530 -12.57665
-12.48895 -12.40872 -12.28888 -11.94381 -11.76952 -11.58542 -10.90946 -10.13930
-10.01862 -9.86384 -9.60756 -9.57064 -9.40883 -8.24245 -6.80242 0.09523
0.31655 0.96432 1.12305 1.42995 1.44002 1.60982 1.71088 1.86668
2.27514 2.52251 2.60704 3.03171 3.58132 3.65426 3.79807 3.83645
3.93811 4.09180 4.26776 4.31197 4.38594 4.45720 4.58074 4.67068
4.68534 4.77045 4.97244 5.01449 5.11800 5.20669 5.21205 5.37352
5.52667 5.65020 5.77856 5.92179 6.16061 6.24309 6.29667 6.79842
6.92511 7.56254 8.54803 8.72790
Molecular weight = 319.08amu
Principal moments of inertia in cm(-1)
A = 0.010385 B = 0.004287 C = 0.003273
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2695.515265 B = 6529.420508 C = 8552.776898
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.096 3.904
2 N -0.380 5.380
3 C 0.058 3.942
4 C -0.274 4.274
5 C 0.065 3.935
6 C 0.278 3.722
7 H 0.064 0.936
8 N -0.736 5.736
9 C 0.549 3.451
10 O -0.623 6.623
11 C -0.568 4.568
12 H 0.088 0.912
13 C 0.033 3.967
14 N -0.820 5.820
15 Si 0.993 3.007
16 H -0.246 1.246
17 H -0.272 1.272
18 H -0.270 1.270
19 C -0.076 4.076
20 C -0.100 4.100
21 C -0.105 4.105
22 C -0.041 4.041
23 Cl -0.065 7.065
24 C -0.105 4.105
25 C -0.098 4.098
26 N -0.319 5.319
27 H 0.080 0.920
28 H 0.090 0.910
29 H 0.119 0.881
30 H 0.213 0.787
31 H 0.124 0.876
32 H 0.396 0.604
33 H 0.273 0.727
34 H 0.137 0.863
35 H 0.155 0.845
36 H 0.154 0.846
37 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.784 -3.792 14.215 18.241
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.044 4.044
2 N -0.163 5.163
3 C -0.088 4.088
4 C -0.304 4.304
5 C -0.102 4.102
6 C 0.169 3.831
7 H 0.082 0.918
8 N -0.391 5.391
9 C 0.353 3.647
10 O -0.509 6.509
11 C -0.604 4.604
12 H 0.106 0.894
13 C -0.182 4.182
14 N -0.449 5.449
15 Si 0.813 3.187
16 H -0.169 1.169
17 H -0.197 1.197
18 H -0.195 1.195
19 C -0.078 4.078
20 C -0.118 4.118
21 C -0.123 4.123
22 C -0.067 4.067
23 Cl -0.036 7.036
24 C -0.124 4.124
25 C -0.116 4.116
26 N -0.143 5.143
27 H 0.099 0.901
28 H 0.109 0.891
29 H 0.138 0.862
30 H 0.229 0.771
31 H 0.142 0.858
32 H 0.231 0.769
33 H 0.082 0.918
34 H 0.155 0.845
35 H 0.173 0.827
36 H 0.172 0.828
37 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -12.125 -5.000 13.360 18.721
hybrid contribution 1.294 1.166 -0.157 1.749
sum -10.831 -3.834 13.203 17.502
Atomic orbital electron populations
1.22183 0.71762 1.06081 1.04336 1.48849 1.07844 1.03049 1.56556
1.22944 0.90060 0.94838 1.00986 1.21373 0.97760 0.94544 1.16688
1.22725 0.93235 0.94873 0.99377 1.17317 0.81696 0.88141 0.95948
0.91784 1.45821 1.27405 1.55513 1.10337 1.18500 0.84571 0.79343
0.82248 1.90581 1.66680 1.65188 1.28465 1.21396 1.10690 1.32791
0.95559 0.89416 1.26876 1.01192 0.96258 0.93905 1.70197 1.38331
1.36602 0.99799 0.85032 0.76299 0.77336 0.80023 1.16917 1.19687
1.19490 1.19847 0.99360 0.94350 0.94197 1.21011 0.99110 1.00488
0.91217 1.21186 0.99468 0.91377 1.00301 1.21015 1.04492 0.91951
0.89282 1.98357 1.96952 1.62959 1.45377 1.21156 0.99946 1.01040
0.90221 1.21049 0.98593 0.92193 0.99809 1.77099 1.01055 1.09304
1.26839 0.90119 0.89089 0.86221 0.77075 0.85818 0.76871 0.91753
0.84546 0.82694 0.82842 0.84972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.65 11.47 127.77 1.47 3.12 16
2 N -0.38 -11.36 4.01 -369.56 -1.48 -12.84 16
3 C 0.06 1.77 11.49 83.54 0.96 2.73 16
4 C -0.27 -10.98 9.87 21.99 0.22 -10.76 16
5 C 0.06 2.66 6.40 43.10 0.28 2.94 16
6 C 0.28 11.61 2.71 43.50 0.12 11.73 16
7 H 0.06 3.12 7.44 -2.39 -0.02 3.10 16
8 N -0.74 -33.06 4.41 -454.01 -2.00 -35.06 16
9 C 0.55 31.17 7.05 86.36 0.61 31.78 16
10 O -0.62 -41.32 14.68 -4.33 -0.06 -41.39 16
11 C -0.57 -31.45 9.54 24.83 0.24 -31.21 16
12 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16
13 C 0.03 1.81 5.50 85.31 0.47 2.27 16
14 N -0.82 -49.71 11.83 21.84 0.26 -49.46 16
15 Si 0.99 40.43 29.56 68.60 2.03 42.46 16
16 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16
17 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16
18 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16
19 C -0.08 -2.53 4.91 -19.86 -0.10 -2.63 16
20 C -0.10 -2.84 9.05 22.27 0.20 -2.64 16
21 C -0.10 -2.51 9.83 22.29 0.22 -2.29 16
22 C -0.04 -0.97 6.32 22.32 0.14 -0.83 16
23 Cl -0.07 -1.34 28.96 -2.72 -0.08 -1.41 16
24 C -0.11 -2.58 9.83 22.29 0.22 -2.36 16
25 C -0.10 -2.89 9.67 22.26 0.22 -2.68 16
26 N -0.32 -12.06 12.54 -47.39 -0.59 -12.65 16
27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16
30 H 0.21 4.30 8.06 -2.91 -0.02 4.28 16
31 H 0.12 5.50 7.50 -2.91 -0.02 5.48 16
32 H 0.40 15.41 6.83 -92.70 -0.63 14.78 16
33 H 0.27 15.01 8.29 -92.71 -0.77 14.24 16
34 H 0.14 3.68 6.90 -2.91 -0.02 3.66 16
35 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16
36 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16
37 H 0.13 3.81 8.04 -2.91 -0.02 3.79 16
Total: -1.00 -80.14 342.41 3.80 -76.35
By element:
Atomic # 1 Polarization: 34.37 SS G_CDS: 0.48 Total: 34.85 kcal
Atomic # 6 Polarization: -6.10 SS G_CDS: 5.25 Total: -0.85 kcal
Atomic # 7 Polarization: -106.19 SS G_CDS: -3.82 Total: -110.01 kcal
Atomic # 8 Polarization: -41.32 SS G_CDS: -0.06 Total: -41.39 kcal
Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal
Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.41 kcal
Total: -80.14 3.80 -76.35 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000368517755.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.526 kcal
(2) G-P(sol) polarization free energy of solvation -80.144 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.347 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.180 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds