Wall clock time and date at job start Tue Mar 31 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38750 * 120.00369 * 2 1 4 4 C 1.38664 * 118.02162 * 179.70843 * 3 2 1 5 5 C 1.39324 * 117.91907 * 0.52635 * 4 3 2 6 6 N 1.39778 * 120.14243 * 179.73596 * 5 4 3 7 7 N 1.40084 * 126.12309 * 334.86246 * 6 5 4 8 8 C 1.30835 * 108.42415 * 180.25097 * 7 6 5 9 9 C 1.39809 * 108.50281 * 359.77700 * 8 7 6 10 10 C 1.36089 * 107.87970 * 359.97438 * 9 8 7 11 11 N 1.39407 * 126.28589 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99611 * 0.02583 * 11 10 9 13 13 O 1.21293 * 120.00456 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72544 * 12 11 10 15 15 S 1.80997 * 109.47151 * 180.27780 * 14 12 11 16 16 C 1.76196 * 100.00314 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00626 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99674 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00584 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47012 * 89.99727 * 20 18 16 22 22 H 1.48501 * 109.47302 * 209.99797 * 20 18 16 23 23 H 1.48501 * 109.46788 * 330.00118 * 20 18 16 24 24 N 1.32404 * 119.71241 * 359.46383 * 5 4 3 25 25 N 1.28348 * 122.08819 * 0.28122 * 24 5 4 26 26 H 1.08999 * 109.46836 * 270.01500 * 1 2 3 27 27 H 1.08998 * 109.47360 * 30.02001 * 1 2 3 28 28 H 1.08999 * 109.47119 * 150.02030 * 1 2 3 29 29 H 1.07996 * 120.98913 * 359.97438 * 3 2 1 30 30 H 1.08005 * 121.03689 * 180.26953 * 4 3 2 31 31 H 1.08004 * 125.74946 * 179.77938 * 8 7 6 32 32 H 1.07996 * 126.06122 * 180.02562 * 9 8 7 33 33 H 0.97001 * 119.99905 * 180.02562 * 11 10 9 34 34 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 35 35 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 36 36 H 0.97003 * 120.00297 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.2016 0.0000 4 6 3.5866 1.1536 0.0062 5 6 4.1960 -0.0993 0.0008 6 7 5.5900 -0.2017 0.0011 7 7 6.4890 0.7616 -0.4746 8 6 7.7054 0.3080 -0.3119 9 6 7.6319 -0.9577 0.2774 10 6 6.3174 -1.2546 0.4669 11 7 5.8086 -2.4247 1.0286 12 6 6.6486 -3.3933 1.4441 13 8 7.8472 -3.2469 1.3298 14 6 6.0988 -4.6556 2.0569 15 16 7.4664 -5.7484 2.5166 16 6 6.5626 -7.1039 3.1877 17 1 5.4834 -7.0730 3.2145 18 6 7.2376 -8.2120 3.6808 19 7 8.5529 -8.2504 3.6467 20 14 6.2794 -9.6494 4.3915 21 1 5.9764 -10.6240 3.3129 22 1 7.0900 -10.3125 5.4444 23 1 5.0101 -9.1544 4.9823 24 7 3.4490 -1.1924 0.0008 25 7 2.1665 -1.1418 0.0003 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6771 2.1461 -0.0004 30 1 4.1751 2.0592 0.0109 31 1 8.6134 0.8244 -0.5866 32 1 8.4698 -1.5877 0.5370 33 1 4.8500 -2.5417 1.1203 34 1 5.5190 -4.4055 2.9455 35 1 5.4572 -5.1606 1.3348 36 1 9.0247 -9.0246 3.9917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427129917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:35 Heat of formation + Delta-G solvation = 95.483484 kcal Electronic energy + Delta-G solvation = -22887.790800 eV Core-core repulsion = 19307.539165 eV Total energy + Delta-G solvation = -3580.251634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.084 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.12785 -41.98130 -40.69504 -36.31061 -35.69327 -34.75632 -34.59811 -32.33211 -31.77688 -29.54446 -28.83178 -27.67373 -26.04395 -24.53306 -23.48628 -22.51370 -21.34175 -20.38058 -19.68086 -18.59364 -17.91523 -17.39326 -17.05720 -16.88725 -16.64554 -16.61338 -16.07625 -15.72774 -15.54084 -15.17641 -14.76386 -14.55256 -14.30348 -14.20747 -13.98101 -13.78090 -13.21190 -13.18789 -12.90296 -12.66332 -12.53245 -12.29747 -12.14906 -11.87676 -11.76410 -11.32305 -11.15324 -11.14159 -10.89740 -10.35324 -9.90025 -9.40501 -8.69416 -8.36336 -6.14713 -0.66912 -0.40996 0.47267 0.58691 1.20031 1.36171 1.42590 1.43115 1.55356 1.78612 1.92273 2.24509 2.28518 2.83186 2.98354 3.15279 3.18319 3.32676 3.49555 3.59855 3.87621 3.94874 4.11207 4.15277 4.31208 4.38941 4.47332 4.54450 4.75036 4.78584 4.87911 4.95899 5.03102 5.28481 5.41658 5.52929 5.66867 5.98097 6.18877 6.39422 6.77986 7.05423 7.39765 8.72795 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.003047 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.827114 B = 9187.200244 C =10944.194247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.056 3.944 3 C -0.069 4.069 4 C -0.111 4.111 5 C 0.286 3.714 6 N -0.347 5.347 7 N -0.292 5.292 8 C 0.102 3.898 9 C -0.291 4.291 10 C 0.315 3.685 11 N -0.635 5.635 12 C 0.544 3.456 13 O -0.511 6.511 14 C -0.128 4.128 15 S -0.127 6.127 16 C -0.550 4.550 17 H 0.083 0.917 18 C 0.016 3.984 19 N -0.909 5.909 20 Si 0.998 3.002 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.259 1.259 24 N -0.303 5.303 25 N -0.245 5.245 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.211 0.789 30 H 0.178 0.822 31 H 0.241 0.759 32 H 0.168 0.832 33 H 0.426 0.574 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.777 23.753 -7.741 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.091 4.091 3 C -0.098 4.098 4 C -0.141 4.141 5 C 0.051 3.949 6 N -0.131 5.131 7 N -0.112 5.112 8 C -0.086 4.086 9 C -0.322 4.322 10 C 0.098 3.902 11 N -0.284 5.284 12 C 0.331 3.669 13 O -0.384 6.384 14 C -0.279 4.279 15 S 0.100 5.900 16 C -0.698 4.698 17 H 0.101 0.899 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.183 1.183 24 N -0.148 5.148 25 N -0.086 5.086 26 H 0.118 0.882 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.228 0.772 30 H 0.195 0.805 31 H 0.257 0.743 32 H 0.186 0.814 33 H 0.266 0.734 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.488 23.093 -8.264 29.009 hybrid contribution -1.145 -0.629 0.803 1.533 sum -16.633 22.464 -7.461 28.931 Atomic orbital electron populations 1.20865 0.83909 1.05687 1.05127 1.23682 1.01300 0.89899 0.94192 1.22854 0.92243 1.01691 0.92999 1.22362 0.96656 0.97182 0.97886 1.19902 0.82197 0.94072 0.98768 1.45722 1.02749 1.13849 1.50812 1.77508 0.99253 1.10614 1.23783 1.24660 0.96689 0.93289 0.93922 1.21902 0.94601 1.01191 1.14526 1.18548 0.91373 0.83788 0.96505 1.43080 1.12196 1.13858 1.59291 1.20282 0.86106 0.83657 0.76893 1.90638 1.15981 1.78577 1.53231 1.23332 1.04494 0.95369 1.04680 1.85481 1.09199 1.15924 1.79393 1.23213 0.95492 1.04186 1.46915 0.89860 1.26095 0.96109 1.01229 0.95467 1.70162 1.08453 1.31213 1.44722 0.84959 0.78150 0.76936 0.77986 1.19340 1.20184 1.18285 1.72668 1.01327 1.26126 1.14684 1.72909 0.98251 1.26889 1.10579 0.88200 0.86677 0.90379 0.77167 0.80470 0.74329 0.81433 0.73359 0.86628 0.86677 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 10.19 71.24 0.73 0.18 16 2 C 0.06 0.78 6.87 42.68 0.29 1.07 16 3 C -0.07 -0.65 9.87 22.49 0.22 -0.43 16 4 C -0.11 -1.78 9.85 22.63 0.22 -1.55 16 5 C 0.29 7.16 7.48 132.84 0.99 8.15 16 6 N -0.35 -9.87 3.79 -189.18 -0.72 -10.59 16 7 N -0.29 -7.40 12.16 -57.06 -0.69 -8.09 16 8 C 0.10 2.37 12.00 85.22 1.02 3.39 16 9 C -0.29 -9.03 9.65 22.15 0.21 -8.82 16 10 C 0.31 10.24 7.57 131.04 0.99 11.24 16 11 N -0.63 -21.15 5.35 -307.96 -1.65 -22.80 16 12 C 0.54 21.34 7.81 87.66 0.68 22.02 16 13 O -0.51 -22.99 13.00 -3.07 -0.04 -23.03 16 14 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 15 S -0.13 -6.96 20.57 -56.49 -1.16 -8.12 16 16 C -0.55 -31.31 9.50 67.95 0.65 -30.66 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 18 C 0.02 0.91 5.49 84.86 0.47 1.38 16 19 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 20 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 N -0.30 -8.27 9.35 -54.78 -0.51 -8.78 16 25 N -0.24 -5.69 11.42 -47.58 -0.54 -6.23 16 26 H 0.10 0.36 8.14 -2.39 -0.02 0.35 16 27 H 0.11 -0.09 8.09 -2.39 -0.02 -0.11 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.21 -0.23 8.06 -2.91 -0.02 -0.25 16 30 H 0.18 2.20 7.98 -2.91 -0.02 2.18 16 31 H 0.24 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.17 5.87 5.83 -2.91 -0.02 5.85 16 33 H 0.43 12.99 6.83 -92.71 -0.63 12.35 16 34 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 35 H 0.12 4.32 8.14 -2.40 -0.02 4.30 16 36 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -80.33 335.70 4.43 -75.90 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.51 Total: 20.03 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.92 Total: 1.19 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -3.83 Total: -111.56 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.04 Total: -23.03 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -6.96 SS G_CDS: -1.16 Total: -8.12 kcal Total: -80.33 4.43 -75.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427129917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.382 kcal (2) G-P(sol) polarization free energy of solvation -80.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds