Wall clock time and date at job start Tue Mar 31 2020 13:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 120.00036 * 2 1 4 4 H 1.48502 * 109.46673 * 274.99318 * 3 2 1 5 5 H 1.48504 * 109.47076 * 34.98918 * 3 2 1 6 6 H 1.48497 * 109.47003 * 154.99070 * 3 2 1 7 7 C 1.37873 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00340 * 172.12849 * 7 2 1 9 9 C 1.50701 * 119.99638 * 352.40561 * 7 2 1 10 10 O 1.42896 * 110.64374 * 302.76511 * 9 7 2 11 11 C 1.55156 * 110.72178 * 66.10524 * 9 7 2 12 12 C 1.54905 * 101.58470 * 153.86564 * 11 9 7 13 13 N 1.47430 * 104.82933 * 322.98358 * 12 11 9 14 14 C 1.34774 * 125.64631 * 204.09246 * 13 12 11 15 15 O 1.21287 * 119.99798 * 175.02753 * 14 13 12 16 16 C 1.50696 * 120.00280 * 355.02492 * 14 13 12 17 17 H 1.08995 * 109.27000 * 335.38805 * 16 14 13 18 18 C 1.54147 * 109.27914 * 94.83949 * 16 14 13 19 19 S 1.83296 * 101.07966 * 148.60826 * 18 16 14 20 20 C 1.77444 * 96.61131 * 335.16167 * 19 18 16 21 21 C 1.38825 * 130.56891 * 195.43241 * 20 19 18 22 22 C 1.38031 * 120.15524 * 179.35462 * 21 20 19 23 23 C 1.38315 * 119.29416 * 359.97438 * 22 21 20 24 24 C 1.37701 * 120.54481 * 0.18277 * 23 22 21 25 25 C 1.38879 * 108.27950 * 15.16243 * 20 19 18 26 26 C 1.47023 * 108.70354 * 24.13616 * 13 12 11 27 27 H 0.96999 * 119.99809 * 359.97438 * 1 2 3 28 28 H 0.96696 * 114.00231 * 59.30096 * 10 9 7 29 29 H 1.09003 * 110.99864 * 271.93802 * 11 9 7 30 30 H 1.08997 * 111.00872 * 35.78476 * 11 9 7 31 31 H 1.09008 * 110.36747 * 204.15307 * 12 11 9 32 32 H 1.08998 * 110.46740 * 81.87371 * 12 11 9 33 33 H 1.08995 * 111.09677 * 266.55893 * 18 16 14 34 34 H 1.09007 * 111.09953 * 30.65322 * 18 16 14 35 35 H 1.08000 * 119.92080 * 359.35410 * 21 20 19 36 36 H 1.08002 * 120.35149 * 180.02562 * 22 21 20 37 37 H 1.08002 * 119.72687 * 180.16828 * 23 22 21 38 38 H 1.07999 * 119.47493 * 179.97438 * 24 23 22 39 39 H 1.08997 * 109.88261 * 239.52378 * 26 13 12 40 40 H 1.08991 * 110.01204 * 118.42363 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6200 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 0.0005 8 1 3.0770 -1.1985 -0.1276 9 6 1.2609 -2.4933 0.1736 10 8 0.5171 -2.4893 1.3937 11 6 0.3314 -2.7596 -1.0398 12 6 0.2309 -4.3053 -1.0213 13 7 1.5726 -4.7658 -0.6195 14 6 2.1035 -5.9737 -0.8946 15 8 3.2531 -6.2140 -0.5918 16 6 1.2687 -7.0257 -1.5783 17 1 0.2142 -6.8302 -1.3844 18 6 1.5241 -6.9700 -3.0974 19 16 1.2916 -8.7288 -3.5583 20 6 1.6762 -9.4100 -1.9656 21 6 1.9871 -10.7100 -1.5908 22 6 2.2671 -11.0031 -0.2713 23 6 2.2347 -9.9890 0.6687 24 6 1.9231 -8.7002 0.2974 25 6 1.6326 -8.3837 -1.0309 26 6 2.2350 -3.6896 0.1319 27 1 -0.4850 0.8401 0.0004 28 1 -0.1361 -1.7789 1.4538 29 1 -0.6469 -2.3027 -0.8901 30 1 0.7871 -2.4087 -1.9656 31 1 -0.0176 -4.6812 -2.0139 32 1 -0.5148 -4.6302 -0.2958 33 1 0.7923 -6.3339 -3.5952 34 1 2.5402 -6.6390 -3.3127 35 1 2.0099 -11.4939 -2.3334 36 1 2.5098 -12.0133 0.0237 37 1 2.4553 -10.2100 1.7026 38 1 1.9024 -7.9218 1.0458 39 1 3.1572 -3.3993 -0.3715 40 1 2.4555 -4.0236 1.1457 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:12 Heat of formation + Delta-G solvation = -51.120102 kcal Electronic energy + Delta-G solvation = -24524.828987 eV Core-core repulsion = 21009.467737 eV Total energy + Delta-G solvation = -3515.361251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31612 -38.92879 -37.37242 -34.60266 -34.36371 -32.26963 -30.97402 -30.12502 -29.44682 -28.41561 -25.82514 -24.51237 -22.97834 -22.56508 -21.49474 -19.76441 -18.83848 -17.79995 -17.44461 -17.01605 -15.82696 -15.58423 -15.46055 -15.03409 -14.84027 -14.73639 -14.41699 -14.07824 -13.71460 -13.18288 -13.14278 -13.06114 -12.71564 -12.38137 -12.14263 -12.07323 -11.83507 -11.53469 -11.46718 -11.42603 -11.29214 -10.94775 -10.70909 -10.55076 -10.44159 -10.21219 -9.90737 -9.52515 -9.35543 -8.90110 -8.78999 -8.29253 -8.15334 -7.56509 -6.36275 -4.42957 1.01170 1.21570 1.42607 2.01061 2.82294 3.15076 3.23723 3.25921 3.31111 3.61413 4.17023 4.21609 4.48356 4.64880 4.76274 4.86725 4.90507 4.98640 5.17763 5.25273 5.38205 5.42081 5.45158 5.62817 5.64788 5.79308 5.84180 5.90800 6.09616 6.11602 6.22924 6.34365 6.38239 6.57389 6.74809 6.79670 6.86030 7.20258 7.26558 7.66269 7.91804 7.93785 8.42325 8.58897 9.23129 9.29148 10.70779 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.003214 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.768998 B = 8708.502841 C = 9138.676749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.133 4.133 12 C 0.091 3.909 13 N -0.604 5.604 14 C 0.531 3.469 15 O -0.539 6.539 16 C -0.071 4.071 17 H 0.116 0.884 18 C -0.071 4.071 19 S -0.142 6.142 20 C -0.075 4.075 21 C -0.092 4.092 22 C -0.103 4.103 23 C -0.119 4.119 24 C -0.071 4.071 25 C -0.081 4.081 26 C 0.123 3.877 27 H 0.268 0.732 28 H 0.383 0.617 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.692 -15.918 -3.894 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.172 4.172 12 C -0.032 4.032 13 N -0.337 5.337 14 C 0.317 3.683 15 O -0.417 6.417 16 C -0.093 4.093 17 H 0.134 0.866 18 C -0.220 4.220 19 S 0.100 5.900 20 C -0.188 4.188 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.091 4.091 25 C -0.086 4.086 26 C 0.001 3.999 27 H 0.078 0.922 28 H 0.233 0.767 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.183 -16.955 -4.847 17.674 hybrid contribution 0.300 2.045 0.988 2.290 sum -0.883 -14.911 -3.859 15.427 Atomic orbital electron populations 1.69724 1.05943 1.27711 1.49947 1.24980 0.95018 0.99571 0.93357 0.86421 0.80110 0.82472 0.78122 1.20567 1.20885 1.19594 1.21507 0.94522 0.90467 1.51051 0.91700 1.19430 0.87297 0.90893 0.81633 1.86122 1.56270 1.56690 1.40268 1.23321 1.02957 0.89563 1.01352 1.22593 0.83712 0.98463 0.98414 1.48683 1.17659 1.13458 1.53871 1.19646 0.87227 0.81617 0.79856 1.90704 1.17461 1.79600 1.53937 1.20695 1.02374 0.92152 0.94090 0.86619 1.24267 1.07443 0.95416 0.94849 1.85955 1.86692 1.04048 1.13271 1.21956 1.04351 0.96823 0.95628 1.20360 1.00672 0.93846 0.96641 1.21085 0.99415 0.99370 0.92390 1.20968 1.00565 0.92457 0.99964 1.20844 0.96901 0.96876 0.94481 1.20258 1.01684 0.92239 0.94464 1.22104 0.96412 0.86270 0.95104 0.92173 0.76672 0.89247 0.91315 0.92178 0.91711 0.85869 0.87544 0.85526 0.85123 0.85456 0.85962 0.90856 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.14 10.74 55.43 0.60 -21.55 16 2 C 0.07 1.83 5.25 -17.82 -0.09 1.74 16 3 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -13.59 8.20 -34.44 -0.28 -13.87 16 8 H 0.06 1.66 7.54 -52.49 -0.40 1.26 16 9 C 0.25 5.70 0.85 -89.93 -0.08 5.62 16 10 O -0.58 -14.02 13.08 -35.23 -0.46 -14.48 16 11 C -0.13 -2.70 5.55 -24.59 -0.14 -2.84 16 12 C 0.09 1.52 6.15 -2.53 -0.02 1.50 16 13 N -0.60 -11.22 3.33 -170.52 -0.57 -11.79 16 14 C 0.53 9.45 6.20 -10.99 -0.07 9.39 16 15 O -0.54 -11.35 16.33 5.55 0.09 -11.25 16 16 C -0.07 -1.01 2.39 -92.24 -0.22 -1.23 16 17 H 0.12 1.47 7.10 -51.93 -0.37 1.10 16 18 C -0.07 -0.88 7.02 37.76 0.27 -0.62 16 19 S -0.14 -1.77 23.08 -107.50 -2.48 -4.25 16 20 C -0.08 -1.01 6.48 -39.13 -0.25 -1.27 16 21 C -0.09 -1.05 10.05 -39.44 -0.40 -1.45 16 22 C -0.10 -1.06 10.08 -39.63 -0.40 -1.46 16 23 C -0.12 -1.37 10.00 -39.75 -0.40 -1.77 16 24 C -0.07 -1.00 9.01 -39.27 -0.35 -1.36 16 25 C -0.08 -1.18 5.23 -103.79 -0.54 -1.72 16 26 C 0.12 2.65 6.22 -3.06 -0.02 2.63 16 27 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 28 H 0.38 9.21 7.35 45.56 0.33 9.54 16 29 H 0.09 1.89 7.60 -51.93 -0.39 1.50 16 30 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 31 H 0.06 0.82 7.66 -51.92 -0.40 0.42 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.11 1.41 7.92 -51.93 -0.41 1.00 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.79 7.84 -52.49 -0.41 1.38 16 39 H 0.07 1.63 7.63 -51.93 -0.40 1.23 16 40 H 0.06 1.38 8.07 -51.93 -0.42 0.97 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -28.12 341.63 -10.21 -38.33 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.53 Total: 11.80 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.99 Total: -6.70 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.03 Total: -33.33 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.37 Total: -25.74 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.48 Total: -4.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.12 -10.21 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.787 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds