Wall clock time and date at job start Tue Mar 31 2020 12:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47136 * 2 1 4 4 C 1.52994 * 109.47268 * 120.00373 * 2 1 3 5 5 C 1.50702 * 109.47039 * 294.99584 * 4 2 1 6 6 H 1.08005 * 119.99893 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00247 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99794 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00099 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47019 * 60.00082 * 9 7 5 11 11 H 1.48498 * 109.46979 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47179 * 300.00026 * 9 7 5 13 13 C 1.53005 * 109.46762 * 240.00189 * 2 1 3 14 14 N 1.46493 * 109.47317 * 64.99883 * 13 2 1 15 15 C 1.40035 * 119.99977 * 180.02562 * 14 13 2 16 16 C 1.38711 * 120.07839 * 0.02562 * 15 14 13 17 17 C 1.38222 * 119.99243 * 179.97438 * 16 15 14 18 18 C 1.38355 * 120.14653 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.92004 * 180.02562 * 18 17 16 20 20 C 1.38374 * 120.15737 * 359.74954 * 18 17 16 21 21 C 1.38505 * 120.00019 * 0.50351 * 20 18 17 22 22 O 1.36011 * 120.06974 * 179.77202 * 21 20 18 23 23 C 1.42903 * 117.00244 * 359.72606 * 22 21 20 24 24 F 1.39904 * 109.46926 * 59.99665 * 23 22 21 25 25 F 1.39901 * 109.46899 * 300.00209 * 23 22 21 26 26 H 1.08995 * 109.47624 * 59.99776 * 1 2 3 27 27 H 1.08996 * 109.47630 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46873 * 299.99878 * 1 2 3 29 29 H 1.09000 * 109.47427 * 54.99567 * 4 2 1 30 30 H 1.09004 * 109.47423 * 174.99747 * 4 2 1 31 31 H 0.96997 * 119.99801 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46952 * 304.99689 * 13 2 1 33 33 H 1.08995 * 109.46961 * 185.00182 * 13 2 1 34 34 H 0.97007 * 120.00108 * 0.02562 * 14 13 2 35 35 H 1.08000 * 120.00007 * 0.02562 * 16 15 14 36 36 H 1.08001 * 119.92738 * 180.02562 * 17 16 15 37 37 H 1.07993 * 119.99806 * 180.27598 * 20 18 17 38 38 H 1.09002 * 109.47382 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0570 2.4765 6 1 1.0800 0.9742 2.3757 7 6 1.9933 -0.4018 3.7282 8 7 2.6765 -1.5188 3.8510 9 14 1.4999 0.5634 5.2495 10 1 0.0199 0.6700 5.3096 11 1 1.9948 -0.1368 6.4620 12 1 2.0920 1.9236 5.1865 13 6 2.0399 -0.7212 -1.2493 14 7 1.6523 0.0353 -2.4424 15 6 2.0087 -0.4312 -3.7137 16 6 2.7283 -1.6097 -3.8453 17 6 3.0788 -2.0688 -5.1011 18 6 2.7129 -1.3555 -6.2287 19 17 3.1556 -1.9379 -7.8031 20 6 1.9901 -0.1821 -6.1049 21 6 1.6401 0.2865 -4.8494 22 8 0.9337 1.4422 -4.7258 23 6 0.5907 2.1252 -5.9333 24 9 -0.1934 1.2891 -6.7354 25 9 1.7587 2.4704 -6.6216 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.6053 -1.7198 1.2951 30 1 3.1263 -0.7996 1.2055 31 1 2.9237 -1.8418 4.7316 32 1 1.6053 -1.7198 -1.2952 33 1 3.1261 -0.7995 -1.2057 34 1 1.1487 0.8595 -2.3517 35 1 3.0140 -2.1689 -2.9666 36 1 3.6387 -2.9868 -5.2023 37 1 1.7020 0.3703 -6.9870 38 1 0.0297 3.0284 -5.6931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602610652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:39 Heat of formation + Delta-G solvation = -143.501804 kcal Electronic energy + Delta-G solvation = -24150.226816 eV Core-core repulsion = 20074.586358 eV Total energy + Delta-G solvation = -4075.640458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.59509 -47.58404 -40.32004 -37.87743 -37.06153 -36.07972 -33.97316 -32.11466 -30.59112 -29.03753 -26.93085 -26.31827 -25.86105 -23.33039 -22.53251 -21.67410 -19.65224 -19.00969 -18.50028 -18.15448 -16.92901 -16.65467 -16.17778 -15.84987 -15.08586 -15.00027 -14.58306 -14.50153 -14.18057 -14.11146 -13.92038 -13.84536 -13.30697 -13.02098 -12.93573 -12.83509 -12.52428 -12.25472 -12.08822 -11.67098 -11.45290 -11.33608 -10.97290 -10.95386 -10.87675 -10.46555 -10.42007 -10.02402 -9.68871 -9.36565 -9.11750 -8.87342 -8.41155 -7.24956 -6.05922 -4.08023 1.12563 1.26589 2.12840 2.32413 3.21018 3.29079 3.34272 3.35753 3.52302 3.54216 4.04391 4.37820 4.41099 4.62231 4.88705 4.96176 5.25602 5.30014 5.40986 5.52690 5.59830 5.66695 5.84569 5.98352 6.10365 6.19335 6.28156 6.34357 6.37276 6.61493 6.79610 6.94001 6.98202 7.35442 7.56286 7.69665 7.80594 7.92203 8.34378 8.97295 9.55981 11.05431 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.019597 B = 0.002721 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.421463 B =10286.641438 C =11405.122788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.063 0.937 4 C 0.031 3.969 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.123 3.877 14 N -0.729 5.729 15 C 0.229 3.771 16 C -0.165 4.165 17 C -0.075 4.075 18 C -0.071 4.071 19 Cl -0.080 7.080 20 C -0.132 4.132 21 C 0.028 3.972 22 O -0.318 6.318 23 C 0.413 3.587 24 F -0.200 7.200 25 F -0.200 7.200 26 H 0.030 0.970 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.405 0.595 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 3.864 -21.938 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.000 4.000 14 N -0.356 5.356 15 C 0.122 3.878 16 C -0.189 4.189 17 C -0.094 4.094 18 C -0.100 4.100 19 Cl -0.051 7.051 20 C -0.152 4.152 21 C -0.019 4.019 22 O -0.236 6.236 23 C 0.322 3.678 24 F -0.182 7.182 25 F -0.181 7.181 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.240 0.760 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.510 3.655 -21.602 22.053 hybrid contribution -0.336 0.702 0.440 0.894 sum -2.846 4.357 -21.163 21.793 Atomic orbital electron populations 1.21727 0.95830 1.01167 1.00266 1.21445 0.95728 0.99871 0.94418 0.91871 1.19073 0.96277 0.95544 0.89763 1.21145 1.35154 1.08424 0.90910 0.92601 1.25007 0.95188 0.95066 0.99126 1.69943 1.38680 1.21089 1.23686 0.86672 0.78887 0.80109 0.82426 1.20267 1.21296 1.20270 1.21741 0.99328 0.95280 0.83696 1.45048 1.60441 1.28139 1.01971 1.17323 0.94155 0.92360 0.84004 1.20543 1.03814 0.96500 0.98036 1.20790 0.98948 0.99470 0.90228 1.20179 1.06124 0.97516 0.86183 1.98338 1.91993 1.88432 1.26355 1.21024 1.00876 0.97247 0.96021 1.17999 1.02283 0.88797 0.92857 1.86548 1.70267 1.35639 1.31184 1.23318 0.78686 0.89939 0.75827 1.93098 1.74724 1.74982 1.75359 1.93100 1.51902 1.92249 1.80891 0.95054 0.93417 0.91702 0.96264 0.96406 0.92892 0.92222 0.92153 0.75951 0.83831 0.84730 0.84353 0.80347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.88 37.16 0.33 -1.96 16 2 C -0.10 -1.77 2.37 -90.62 -0.22 -1.98 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.52 -13.81 8.41 -34.44 -0.29 -14.10 16 6 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.12 1.90 4.31 -4.04 -0.02 1.89 16 14 N -0.73 -10.13 5.46 -58.48 -0.32 -10.45 16 15 C 0.23 3.10 6.67 -83.54 -0.56 2.54 16 16 C -0.17 -2.07 9.31 -39.41 -0.37 -2.44 16 17 C -0.07 -0.87 9.82 -39.54 -0.39 -1.26 16 18 C -0.07 -0.87 6.32 -39.49 -0.25 -1.12 16 19 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.40 16 20 C -0.13 -1.65 8.04 -39.43 -0.32 -1.97 16 21 C 0.03 0.36 6.50 -39.09 -0.25 0.11 16 22 O -0.32 -3.59 9.68 -19.78 -0.19 -3.78 16 23 C 0.41 3.40 5.98 101.05 0.60 4.00 16 24 F -0.20 -1.95 15.57 2.25 0.04 -1.92 16 25 F -0.20 -1.96 15.60 2.25 0.04 -1.92 16 26 H 0.03 0.46 7.18 -51.93 -0.37 0.08 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.22 6.95 -51.92 -0.36 0.86 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.06 0.92 7.95 -51.93 -0.41 0.50 16 33 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 34 H 0.40 5.44 7.02 -40.82 -0.29 5.15 16 35 H 0.14 1.69 6.74 -52.49 -0.35 1.33 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.14 1.66 5.09 -52.49 -0.27 1.39 16 38 H 0.18 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -29.56 338.93 -7.57 -37.13 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.51 Total: 1.69 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.94 Total: -14.19 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.42 Total: -35.73 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.19 Total: -3.78 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.07 Total: -3.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.56 -7.57 -37.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.374 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds