Wall clock time and date at job start Tue Mar 31 2020 13:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46500 * 109.47466 * 64.99479 * 10 9 7 13 13 C 1.34771 * 120.00556 * 205.00158 * 12 10 9 14 14 O 1.21290 * 119.99752 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00181 * 180.02562 * 13 12 10 16 16 F 1.39907 * 109.47200 * 274.99726 * 15 13 12 17 17 F 1.39898 * 109.47340 * 34.99764 * 15 13 12 18 18 C 1.53003 * 109.46993 * 155.00286 * 15 13 12 19 19 F 1.39898 * 109.47505 * 59.99578 * 18 15 13 20 20 F 1.39902 * 109.46885 * 180.02562 * 18 15 13 21 21 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 22 22 C 1.38233 * 119.99377 * 279.72159 * 21 10 9 23 23 C 1.38237 * 119.99600 * 179.78842 * 22 21 10 24 24 C 1.38241 * 119.99990 * 0.44354 * 23 22 21 25 25 C 1.38237 * 119.99716 * 359.81238 * 24 23 22 26 26 C 1.38228 * 120.00326 * 99.99831 * 21 10 9 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 0.97002 * 119.99373 * 25.00408 * 12 10 9 31 31 H 1.09001 * 109.46736 * 299.99783 * 18 15 13 32 32 H 1.07995 * 120.00514 * 359.97438 * 22 21 10 33 33 H 1.08001 * 120.00058 * 180.28006 * 23 22 21 34 34 H 1.07995 * 120.00194 * 179.83256 * 24 23 22 35 35 H 1.08001 * 119.99824 * 180.02562 * 25 24 23 36 36 H 1.08005 * 119.99906 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6391 -3.2942 -1.2413 13 6 3.5125 -4.6351 -1.2869 14 8 3.7147 -5.2976 -0.2912 15 6 3.1197 -5.3115 -2.5750 16 9 1.7259 -5.3101 -2.6963 17 9 3.6824 -4.6219 -3.6543 18 6 3.6296 -6.7541 -2.5696 19 9 3.0669 -7.4437 -1.4903 20 9 3.2654 -7.3818 -3.7657 21 6 5.5229 -2.6381 0.1409 22 6 6.3130 -2.4048 -0.9691 23 6 7.6901 -2.4019 -0.8489 24 6 8.2773 -2.6414 0.3795 25 6 7.4871 -2.8799 1.4884 26 6 6.1100 -2.8785 1.3690 27 1 -0.4849 0.8400 0.0004 28 1 3.8786 -0.6821 -0.8838 29 1 3.8711 -0.6785 0.8962 30 1 3.4771 -2.7643 -2.0375 31 1 4.7155 -6.7552 -2.4751 32 1 5.8544 -2.2218 -1.9296 33 1 8.3074 -2.2151 -1.7152 34 1 9.3532 -2.6418 0.4729 35 1 7.9458 -3.0666 2.4482 36 1 5.4927 -3.0648 2.2355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749046201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:21 Heat of formation + Delta-G solvation = -207.117987 kcal Electronic energy + Delta-G solvation = -27505.438740 eV Core-core repulsion = 22875.242997 eV Total energy + Delta-G solvation = -4630.195743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.02483 -48.80107 -47.65442 -47.17720 -40.02086 -38.72817 -35.70326 -32.85116 -31.70203 -30.73631 -30.44787 -29.43978 -25.73098 -24.15899 -22.49200 -21.92027 -21.17278 -20.14174 -18.87134 -18.66135 -18.31506 -17.29572 -16.97009 -16.82978 -16.48266 -15.98713 -15.14938 -15.04940 -14.69944 -14.51165 -14.45285 -14.16056 -14.12028 -13.94950 -13.79182 -13.64478 -13.25842 -13.21915 -13.09198 -12.83165 -12.73542 -12.51403 -12.12031 -11.50492 -11.40412 -11.25081 -10.88762 -10.66452 -10.42050 -10.04529 -9.91926 -9.45657 -8.96853 -8.76167 -8.69934 -8.48538 -6.18716 -4.20565 1.49730 1.56159 2.08555 2.26129 2.86218 3.19434 3.29038 3.30301 3.48882 3.62206 3.84547 3.93491 4.21578 4.30610 4.60589 4.75152 5.01359 5.04155 5.12772 5.14697 5.28388 5.64585 5.66577 5.80868 6.03547 6.13704 6.23477 6.32742 6.59494 6.63061 6.75545 6.87016 7.04571 7.15278 7.42951 7.53557 7.97109 8.33069 8.85279 9.40694 10.93759 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.005820 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.751743 B = 4809.991576 C = 6786.073456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.193 3.807 11 H 0.100 0.900 12 N -0.670 5.670 13 C 0.486 3.514 14 O -0.495 6.495 15 C 0.237 3.763 16 F -0.157 7.157 17 F -0.168 7.168 18 C 0.254 3.746 19 F -0.163 7.163 20 F -0.184 7.184 21 C -0.083 4.083 22 C -0.111 4.111 23 C -0.123 4.123 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.104 4.104 27 H 0.265 0.735 28 H 0.022 0.978 29 H 0.040 0.960 30 H 0.411 0.589 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.112 -8.631 -4.593 17.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.090 3.910 11 H 0.118 0.882 12 N -0.319 5.319 13 C 0.264 3.736 14 O -0.370 6.370 15 C 0.196 3.804 16 F -0.138 7.138 17 F -0.149 7.149 18 C 0.198 3.802 19 F -0.144 7.144 20 F -0.165 7.165 21 C -0.084 4.084 22 C -0.129 4.129 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.123 4.123 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.247 0.753 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.029 -8.967 -3.886 17.098 hybrid contribution -0.041 1.254 -0.670 1.423 sum 13.988 -7.713 -4.556 16.610 Atomic orbital electron populations 1.69900 1.06291 1.27136 1.49725 1.24984 0.94699 0.99035 0.94213 0.86853 0.80440 0.83817 0.78662 1.20160 1.21174 1.18898 1.20992 0.88491 0.94858 1.52414 0.90567 1.19905 0.98018 0.89123 0.98068 1.20207 0.88249 0.96815 0.85746 0.88207 1.45907 1.65689 1.04913 1.15353 1.20077 0.80513 0.84650 0.88354 1.90840 1.49033 1.63745 1.33384 1.22579 0.78022 0.93418 0.86373 1.93196 1.27448 1.97052 1.96087 1.93111 1.84447 1.80344 1.57006 1.22370 0.99762 0.84953 0.73084 1.93126 1.87306 1.79794 1.54181 1.93071 1.93774 1.83428 1.46194 1.20463 0.96268 0.97945 0.93773 1.20967 0.93513 0.99976 0.98471 1.21075 0.94760 1.00805 0.97493 1.21067 0.99409 1.01165 0.93135 1.21086 0.93733 1.00578 0.98499 1.21042 0.94786 0.99141 0.97294 0.92466 0.96014 0.94225 0.75281 0.83904 0.86333 0.86434 0.86573 0.86297 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -13.79 9.39 -34.44 -0.32 -14.11 16 8 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.29 3.56 -27.88 -0.10 -0.39 16 10 C 0.19 3.52 2.12 -69.08 -0.15 3.38 16 11 H 0.10 1.99 7.44 -51.92 -0.39 1.61 16 12 N -0.67 -11.30 3.95 -54.93 -0.22 -11.52 16 13 C 0.49 8.05 7.18 -10.99 -0.08 7.97 16 14 O -0.50 -9.21 14.90 5.55 0.08 -9.13 16 15 C 0.24 3.42 2.02 -27.88 -0.06 3.37 16 16 F -0.16 -2.62 17.01 2.25 0.04 -2.58 16 17 F -0.17 -2.17 16.49 2.25 0.04 -2.14 16 18 C 0.25 3.12 4.61 37.16 0.17 3.29 16 19 F -0.16 -2.41 15.95 2.25 0.04 -2.37 16 20 F -0.18 -2.30 17.30 2.25 0.04 -2.26 16 21 C -0.08 -1.33 4.91 -104.63 -0.51 -1.85 16 22 C -0.11 -1.58 9.33 -39.58 -0.37 -1.95 16 23 C -0.12 -1.53 10.05 -39.58 -0.40 -1.92 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 26 C -0.10 -1.55 9.67 -39.59 -0.38 -1.93 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.02 0.44 7.58 -51.93 -0.39 0.05 16 29 H 0.04 0.86 7.19 -51.93 -0.37 0.48 16 30 H 0.41 6.48 8.16 -40.82 -0.33 6.15 16 31 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.12 1.55 7.71 -52.49 -0.40 1.15 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.75 8.04 -52.48 -0.42 1.33 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -30.54 330.90 -5.57 -36.11 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -3.59 Total: 4.86 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.09 Total: -6.10 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.56 Total: -37.01 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.13 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 0.15 Total: -9.35 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.54 -5.57 -36.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749046201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.009 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds