Wall clock time and date at job start Tue Mar 31 2020 13:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 N 1.46500 * 109.47466 * 64.99479 * 10 9 7 13 13 C 1.34771 * 120.00556 * 205.00158 * 12 10 9 14 14 O 1.21290 * 119.99752 * 0.02562 * 13 12 10 15 15 C 1.50697 * 120.00181 * 180.02562 * 13 12 10 16 16 F 1.39907 * 109.47200 * 274.99726 * 15 13 12 17 17 F 1.39898 * 109.47340 * 34.99764 * 15 13 12 18 18 C 1.53003 * 109.46993 * 155.00286 * 15 13 12 19 19 F 1.39898 * 109.47505 * 59.99578 * 18 15 13 20 20 F 1.39902 * 109.46885 * 180.02562 * 18 15 13 21 21 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 22 22 C 1.38233 * 119.99377 * 279.72159 * 21 10 9 23 23 C 1.38237 * 119.99600 * 179.78842 * 22 21 10 24 24 C 1.38241 * 119.99990 * 0.44354 * 23 22 21 25 25 C 1.38237 * 119.99716 * 359.81238 * 24 23 22 26 26 C 1.38228 * 120.00326 * 99.99831 * 21 10 9 27 27 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 29 29 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 30 30 H 0.97002 * 119.99373 * 25.00408 * 12 10 9 31 31 H 1.09001 * 109.46736 * 299.99783 * 18 15 13 32 32 H 1.07995 * 120.00514 * 359.97438 * 22 21 10 33 33 H 1.08001 * 120.00058 * 180.28006 * 23 22 21 34 34 H 1.07995 * 120.00194 * 179.83256 * 24 23 22 35 35 H 1.08001 * 119.99824 * 180.02562 * 25 24 23 36 36 H 1.08005 * 119.99906 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 1 3.5833 -3.1739 0.8519 12 7 3.6391 -3.2942 -1.2413 13 6 3.5125 -4.6351 -1.2869 14 8 3.7147 -5.2976 -0.2912 15 6 3.1197 -5.3115 -2.5750 16 9 1.7259 -5.3101 -2.6963 17 9 3.6824 -4.6219 -3.6543 18 6 3.6296 -6.7541 -2.5696 19 9 3.0669 -7.4437 -1.4903 20 9 3.2654 -7.3818 -3.7657 21 6 5.5229 -2.6381 0.1409 22 6 6.3130 -2.4048 -0.9691 23 6 7.6901 -2.4019 -0.8489 24 6 8.2773 -2.6414 0.3795 25 6 7.4871 -2.8799 1.4884 26 6 6.1100 -2.8785 1.3690 27 1 -0.4849 0.8400 0.0004 28 1 3.8786 -0.6821 -0.8838 29 1 3.8711 -0.6785 0.8962 30 1 3.4771 -2.7643 -2.0375 31 1 4.7155 -6.7552 -2.4751 32 1 5.8544 -2.2218 -1.9296 33 1 8.3074 -2.2151 -1.7152 34 1 9.3532 -2.6418 0.4729 35 1 7.9458 -3.0666 2.4482 36 1 5.4927 -3.0648 2.2355 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749046201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:21 Heat of formation + Delta-G solvation = -225.038414 kcal Electronic energy + Delta-G solvation = -27506.215828 eV Core-core repulsion = 22875.242997 eV Total energy + Delta-G solvation = -4630.972831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.15931 -49.89786 -48.82517 -48.27122 -41.33426 -39.86527 -37.11998 -34.80329 -33.07670 -31.75107 -31.55670 -31.00826 -27.21683 -25.43566 -23.64415 -23.29775 -22.46856 -21.45787 -20.14863 -19.77865 -19.46313 -19.08707 -18.09942 -17.99714 -17.65144 -17.30786 -16.53644 -16.34225 -16.08481 -15.82523 -15.68621 -15.37119 -15.24027 -15.21121 -14.99927 -14.75884 -14.67634 -14.49186 -14.28778 -14.15831 -13.99212 -13.90144 -13.63663 -13.07677 -12.59316 -12.52177 -12.38072 -12.00815 -11.81603 -11.79000 -11.51843 -11.29182 -10.79380 -10.37282 -9.76263 -9.58420 -8.30043 -6.36388 0.44769 0.55730 0.76839 1.06445 1.36271 1.39336 1.49502 1.67836 2.31916 2.34259 2.61849 2.81712 2.85958 3.00415 3.08595 3.56670 3.67158 3.83239 3.98957 4.20773 4.26709 4.34702 4.50296 4.70598 4.74468 4.85401 5.09952 5.12950 5.19264 5.34059 5.53378 5.63695 5.65894 5.74400 6.05987 6.16733 6.21938 6.63023 6.71604 7.28409 8.86204 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.009840 B = 0.005820 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2844.751743 B = 4809.991576 C = 6786.073456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.527 4.527 8 H 0.031 0.969 9 C -0.006 4.006 10 C 0.203 3.797 11 H 0.070 0.930 12 N -0.670 5.670 13 C 0.484 3.516 14 O -0.518 6.518 15 C 0.240 3.760 16 F -0.174 7.174 17 F -0.156 7.156 18 C 0.258 3.742 19 F -0.179 7.179 20 F -0.182 7.182 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.125 4.125 27 H 0.266 0.734 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.415 0.585 31 H 0.189 0.811 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.829 -8.054 -5.455 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.168 1.168 7 C -0.565 4.565 8 H 0.050 0.950 9 C -0.044 4.044 10 C 0.099 3.901 11 H 0.088 0.912 12 N -0.319 5.319 13 C 0.264 3.736 14 O -0.394 6.394 15 C 0.199 3.801 16 F -0.155 7.155 17 F -0.137 7.137 18 C 0.203 3.797 19 F -0.160 7.160 20 F -0.163 7.163 21 C -0.106 4.106 22 C -0.139 4.139 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.252 0.748 31 H 0.206 0.794 32 H 0.143 0.857 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.161 0.839 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.765 -8.403 -4.764 20.222 hybrid contribution -1.196 1.003 -0.389 1.609 sum 16.569 -7.400 -5.153 18.864 Atomic orbital electron populations 1.70069 1.08416 1.28177 1.52005 1.25932 0.95446 1.03279 0.93970 0.85730 0.79527 0.78441 0.79401 1.18759 1.21538 1.16806 1.21227 0.91142 0.93050 1.51097 0.95040 1.19771 0.94477 0.91588 0.98564 1.19823 0.90369 0.94520 0.85365 0.91176 1.45885 1.65664 1.05330 1.15068 1.20383 0.79886 0.84351 0.89001 1.90822 1.49958 1.64161 1.34500 1.22584 0.77196 0.94874 0.85488 1.93162 1.29051 1.97222 1.96099 1.93133 1.84083 1.80330 1.56164 1.22715 1.01582 0.82953 0.72479 1.93095 1.87798 1.79971 1.55123 1.93073 1.93977 1.83177 1.46116 1.20230 0.94385 1.00766 0.95192 1.21122 0.94533 1.00147 0.98050 1.21440 0.94070 0.99496 0.98896 1.21509 1.01098 0.99090 0.92406 1.21392 0.92706 0.99692 1.00188 1.21171 0.96166 1.00188 0.96818 0.92489 0.94349 0.94213 0.74787 0.79442 0.85684 0.83471 0.83239 0.83900 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.75 13.96 21.45 0.30 -57.45 16 2 C 0.01 0.63 5.47 84.66 0.46 1.10 16 3 Si 0.95 41.75 27.47 68.60 1.88 43.64 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 7 C -0.53 -28.41 9.39 25.60 0.24 -28.17 16 8 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.27 3.56 29.85 0.11 -0.16 16 10 C 0.20 7.56 2.12 44.24 0.09 7.66 16 11 H 0.07 2.98 7.44 -2.38 -0.02 2.96 16 12 N -0.67 -22.97 3.95 -446.09 -1.76 -24.73 16 13 C 0.48 16.23 7.18 87.66 0.63 16.86 16 14 O -0.52 -19.67 14.90 -3.06 -0.05 -19.71 16 15 C 0.24 6.80 2.02 29.85 0.06 6.86 16 16 F -0.17 -5.93 17.01 44.97 0.76 -5.16 16 17 F -0.16 -3.83 16.49 44.97 0.74 -3.09 16 18 C 0.26 5.97 4.61 71.98 0.33 6.30 16 19 F -0.18 -5.20 15.95 44.97 0.72 -4.48 16 20 F -0.18 -4.27 17.30 44.97 0.78 -3.49 16 21 C -0.10 -3.26 4.91 -19.87 -0.10 -3.36 16 22 C -0.12 -3.14 9.33 22.27 0.21 -2.93 16 23 C -0.12 -2.52 10.05 22.27 0.22 -2.29 16 24 C -0.12 -2.40 10.05 22.27 0.22 -2.17 16 25 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16 26 C -0.12 -3.60 9.67 22.27 0.22 -3.38 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.04 1.51 7.58 -2.38 -0.02 1.49 16 29 H 0.04 1.70 7.19 -2.39 -0.02 1.68 16 30 H 0.42 13.18 8.16 -92.71 -0.76 12.43 16 31 H 0.19 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.13 2.99 7.71 -2.91 -0.02 2.97 16 33 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.12 3.38 8.04 -2.91 -0.02 3.35 16 Total: -1.00 -68.70 330.90 6.62 -62.08 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.33 Total: 18.61 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 2.92 Total: -6.21 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.46 Total: -82.18 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 9 Polarization: -19.23 SS G_CDS: 3.00 Total: -16.23 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.64 kcal Total: -68.70 6.62 -62.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749046201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.958 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds