Wall clock time and date at job start Tue Mar 31 2020 13:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36882 * 126.40180 * 2 1 4 4 Cl 1.73595 * 126.59639 * 0.02562 * 3 2 1 5 5 C 1.34798 * 106.80241 * 179.97438 * 3 2 1 6 6 N 1.34169 * 108.01628 * 0.02562 * 5 3 2 7 7 C 1.30473 * 109.26720 * 359.97438 * 6 5 3 8 8 C 1.50702 * 125.64272 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.46770 * 269.99839 * 8 7 6 10 10 C 1.34786 * 119.99659 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00098 * 0.02562 * 10 9 8 12 12 C 1.47639 * 119.99589 * 179.97438 * 10 9 8 13 13 C 1.40010 * 119.90030 * 359.73225 * 12 10 9 14 14 C 1.36313 * 120.10793 * 179.75905 * 13 12 10 15 15 C 1.40894 * 119.89228 * 0.50700 * 14 13 12 16 16 C 1.41099 * 120.10270 * 179.71790 * 15 14 13 17 17 H 1.07998 * 120.00152 * 204.65504 * 16 15 14 18 18 C 1.40231 * 120.00432 * 24.65925 * 16 15 14 19 19 N 1.30653 * 119.99430 * 17.86042 * 18 16 15 20 20 Si 1.86797 * 120.00446 * 197.86194 * 18 16 15 21 21 H 1.48502 * 109.46964 * 59.99864 * 20 18 16 22 22 H 1.48491 * 109.47506 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47095 * 300.00035 * 20 18 16 24 24 C 1.40884 * 119.78970 * 359.74720 * 15 14 13 25 25 C 1.36314 * 119.89364 * 359.97438 * 24 15 14 26 26 H 1.09008 * 109.46922 * 90.02135 * 1 2 3 27 27 H 1.08997 * 109.47269 * 210.01990 * 1 2 3 28 28 H 1.09005 * 109.47126 * 330.02879 * 1 2 3 29 29 H 1.07998 * 125.99021 * 179.72978 * 5 3 2 30 30 H 1.09006 * 109.47160 * 29.99364 * 8 7 6 31 31 H 1.08999 * 109.47320 * 149.99847 * 8 7 6 32 32 H 0.96993 * 120.00230 * 359.97438 * 9 8 7 33 33 H 1.07999 * 119.94539 * 0.02562 * 13 12 10 34 34 H 1.08005 * 120.05443 * 180.23219 * 14 13 12 35 35 H 0.96995 * 119.99364 * 180.02562 * 19 18 16 36 36 H 1.08003 * 120.05339 * 179.97438 * 24 15 14 37 37 H 1.08008 * 119.94782 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 17 1.7697 2.7618 0.0006 5 6 3.5472 0.6496 0.0006 6 7 3.5101 -0.6916 0.0003 7 6 2.2670 -1.0879 0.0002 8 6 1.8024 -2.5215 0.0005 9 7 1.6520 -2.9863 -1.3807 10 6 1.2440 -4.2472 -1.6267 11 8 1.0002 -4.9985 -0.7025 12 6 1.0920 -4.7154 -3.0186 13 6 1.3669 -3.8463 -4.0813 14 6 1.2326 -4.2756 -5.3681 15 6 0.8063 -5.5931 -5.6278 16 6 0.6601 -6.0404 -6.9581 17 1 -0.0133 -6.8541 -7.1833 18 6 1.3893 -5.4284 -7.9878 19 7 2.4394 -4.7048 -7.7036 20 14 0.8595 -5.6479 -9.7655 21 1 -0.5182 -5.1217 -9.9400 22 1 1.7887 -4.9051 -10.6543 23 1 0.8864 -7.0908 -10.1155 24 6 0.5257 -6.4623 -4.5552 25 6 0.6683 -6.0257 -3.2718 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5141 28 1 -0.3634 0.8903 0.5134 29 1 4.4381 1.2599 -0.0034 30 1 2.5369 -3.1415 0.5145 31 1 0.8436 -2.5927 0.5142 32 1 1.8462 -2.3868 -2.1180 33 1 1.6899 -2.8353 -3.8812 34 1 1.4485 -3.6056 -6.1872 35 1 2.9435 -4.2812 -8.4158 36 1 0.1982 -7.4730 -4.7494 37 1 0.4531 -6.6912 -2.4487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758962002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:59 Heat of formation + Delta-G solvation = 35.263168 kcal Electronic energy + Delta-G solvation = -22921.517178 eV Core-core repulsion = 19304.317737 eV Total energy + Delta-G solvation = -3617.199441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.49661 -39.11930 -37.20293 -37.07816 -34.61947 -34.32001 -33.90725 -30.87456 -29.72261 -29.46072 -27.54666 -26.64444 -25.24775 -21.99736 -21.81409 -21.01890 -20.34010 -19.70937 -17.80230 -17.54927 -16.77122 -16.45778 -15.58216 -15.53572 -15.19787 -14.47284 -14.32666 -14.06027 -13.89171 -13.43964 -13.31576 -13.15138 -12.89879 -12.72356 -12.52132 -12.23738 -12.10272 -11.94236 -11.83072 -11.39078 -11.28952 -11.02041 -10.67934 -10.31414 -10.10772 -9.98779 -9.59288 -9.38357 -9.18152 -8.78078 -8.59919 -7.75836 -7.58401 -7.06613 -4.63810 1.27231 1.43068 2.18365 2.54675 2.65054 2.90159 2.92650 2.96105 3.00738 3.71090 3.78065 3.80255 4.10625 4.35070 4.51005 4.63212 4.77024 5.07663 5.13201 5.31603 5.53077 5.56881 5.77164 5.98730 6.02681 6.17128 6.28376 6.61235 6.72164 6.75451 6.79483 7.00016 7.09639 7.39673 7.59970 7.65178 7.74298 7.82442 8.03338 8.11579 8.36352 8.59530 8.71713 8.95616 9.85201 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.002775 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.234182 B =10089.203280 C =11217.715481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.445 5.445 3 C 0.013 3.987 4 Cl -0.008 7.008 5 C 0.009 3.991 6 N -0.461 5.461 7 C 0.213 3.787 8 C 0.212 3.788 9 N -0.739 5.739 10 C 0.576 3.424 11 O -0.573 6.573 12 C -0.286 4.286 13 C -0.061 4.061 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.441 4.441 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.769 5.769 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.262 1.262 24 C -0.240 4.240 25 C -0.020 4.020 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.182 0.818 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.400 0.600 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.288 0.712 36 H 0.099 0.901 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 13.198 9.397 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.130 5.130 3 C -0.128 4.128 4 Cl 0.020 6.980 5 C -0.142 4.142 6 N -0.180 5.180 7 C -0.049 4.049 8 C 0.086 3.914 9 N -0.394 5.394 10 C 0.372 3.628 11 O -0.455 6.455 12 C -0.290 4.290 13 C -0.080 4.080 14 C -0.197 4.197 15 C 0.126 3.874 16 C -0.469 4.469 17 H 0.103 0.897 18 C -0.148 4.148 19 N -0.392 5.392 20 Si 0.738 3.262 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.186 1.186 24 C -0.259 4.259 25 C -0.039 4.039 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.200 0.800 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.105 0.895 34 H 0.138 0.862 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.764 12.433 9.960 16.028 hybrid contribution -0.748 1.223 -1.192 1.864 sum -2.512 13.657 8.769 16.423 Atomic orbital electron populations 1.22242 0.75585 1.05280 1.04828 1.45185 1.08183 1.05423 1.54195 1.21820 0.91315 0.82437 1.17227 1.98383 1.91750 1.10347 1.97505 1.22245 0.94537 0.91018 1.06418 1.70481 1.18211 1.10699 1.18578 1.23228 0.85577 0.90317 1.05747 1.19377 1.01585 0.84086 0.86348 1.45915 1.72048 1.14936 1.06479 1.18583 0.74628 0.79668 0.89949 1.90647 1.53203 1.54953 1.46653 1.18812 1.22993 0.97414 0.89812 1.20453 0.97849 0.96393 0.93342 1.20970 1.07228 0.96542 0.95000 1.17783 0.86217 0.90722 0.92673 1.19837 1.20574 1.15064 0.91396 0.89686 1.26117 0.93211 0.92964 1.02485 1.69739 1.10988 1.22113 1.36369 0.86249 0.79911 0.79889 0.80172 1.18476 1.20020 1.18618 1.20716 1.13878 0.99061 0.92253 1.20353 0.94003 0.93485 0.96041 0.89432 0.88447 0.89232 0.80042 0.88305 0.90219 0.76432 0.89528 0.86231 0.90095 0.88325 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.84 59.84 0.65 1.13 16 2 N -0.44 -4.84 3.16 -117.77 -0.37 -5.22 16 3 C 0.01 0.14 7.49 -16.52 -0.12 0.02 16 4 Cl -0.01 -0.07 28.93 -51.86 -1.50 -1.57 16 5 C 0.01 0.10 11.86 -17.75 -0.21 -0.11 16 6 N -0.46 -6.58 11.25 -10.75 -0.12 -6.71 16 7 C 0.21 2.77 7.27 -155.33 -1.13 1.64 16 8 C 0.21 2.90 5.98 -5.19 -0.03 2.87 16 9 N -0.74 -12.02 5.50 -62.49 -0.34 -12.36 16 10 C 0.58 11.74 7.76 -12.42 -0.10 11.65 16 11 O -0.57 -12.93 16.32 5.29 0.09 -12.85 16 12 C -0.29 -6.36 5.89 -104.73 -0.62 -6.98 16 13 C -0.06 -1.34 9.47 -39.61 -0.38 -1.71 16 14 C -0.18 -4.31 8.64 -39.27 -0.34 -4.65 16 15 C 0.13 3.24 5.57 -106.81 -0.60 2.65 16 16 C -0.44 -10.81 9.04 -37.75 -0.34 -11.16 16 17 H 0.09 1.98 7.91 -52.49 -0.42 1.56 16 18 C 0.07 1.70 5.14 -17.30 -0.09 1.61 16 19 N -0.77 -18.29 10.95 55.56 0.61 -17.68 16 20 Si 0.91 17.04 29.60 -169.99 -5.03 12.01 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 C -0.24 -5.69 9.73 -39.27 -0.38 -6.08 16 25 C -0.02 -0.45 9.52 -39.61 -0.38 -0.83 16 26 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.10 0.66 7.05 -51.93 -0.37 0.29 16 28 H 0.09 0.54 7.92 -51.93 -0.41 0.13 16 29 H 0.18 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.08 0.97 7.07 -51.93 -0.37 0.61 16 32 H 0.40 6.25 6.46 -40.82 -0.26 5.99 16 33 H 0.09 1.64 6.37 -52.49 -0.33 1.31 16 34 H 0.12 2.94 6.16 -52.48 -0.32 2.62 16 35 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 36 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 37 H 0.10 2.25 7.63 -52.48 -0.40 1.85 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -28.90 338.51 -9.34 -38.23 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -3.71 Total: 10.98 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -4.06 Total: -9.95 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.23 Total: -41.97 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.50 Total: -1.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.90 -9.34 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758962002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.498 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds