Wall clock time and date at job start Tue Mar 31 2020 13:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36882 * 126.40180 * 2 1 4 4 Cl 1.73595 * 126.59639 * 0.02562 * 3 2 1 5 5 C 1.34798 * 106.80241 * 179.97438 * 3 2 1 6 6 N 1.34169 * 108.01628 * 0.02562 * 5 3 2 7 7 C 1.30473 * 109.26720 * 359.97438 * 6 5 3 8 8 C 1.50702 * 125.64272 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.46770 * 269.99839 * 8 7 6 10 10 C 1.34786 * 119.99659 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00098 * 0.02562 * 10 9 8 12 12 C 1.47639 * 119.99589 * 179.97438 * 10 9 8 13 13 C 1.40010 * 119.90030 * 359.73225 * 12 10 9 14 14 C 1.36313 * 120.10793 * 179.75905 * 13 12 10 15 15 C 1.40894 * 119.89228 * 0.50700 * 14 13 12 16 16 C 1.41099 * 120.10270 * 179.71790 * 15 14 13 17 17 H 1.07998 * 120.00152 * 204.65504 * 16 15 14 18 18 C 1.40231 * 120.00432 * 24.65925 * 16 15 14 19 19 N 1.30653 * 119.99430 * 17.86042 * 18 16 15 20 20 Si 1.86797 * 120.00446 * 197.86194 * 18 16 15 21 21 H 1.48502 * 109.46964 * 59.99864 * 20 18 16 22 22 H 1.48491 * 109.47506 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47095 * 300.00035 * 20 18 16 24 24 C 1.40884 * 119.78970 * 359.74720 * 15 14 13 25 25 C 1.36314 * 119.89364 * 359.97438 * 24 15 14 26 26 H 1.09008 * 109.46922 * 90.02135 * 1 2 3 27 27 H 1.08997 * 109.47269 * 210.01990 * 1 2 3 28 28 H 1.09005 * 109.47126 * 330.02879 * 1 2 3 29 29 H 1.07998 * 125.99021 * 179.72978 * 5 3 2 30 30 H 1.09006 * 109.47160 * 29.99364 * 8 7 6 31 31 H 1.08999 * 109.47320 * 149.99847 * 8 7 6 32 32 H 0.96993 * 120.00230 * 359.97438 * 9 8 7 33 33 H 1.07999 * 119.94539 * 0.02562 * 13 12 10 34 34 H 1.08005 * 120.05443 * 180.23219 * 14 13 12 35 35 H 0.96995 * 119.99364 * 180.02562 * 19 18 16 36 36 H 1.08003 * 120.05339 * 179.97438 * 24 15 14 37 37 H 1.08008 * 119.94782 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 17 1.7697 2.7618 0.0006 5 6 3.5472 0.6496 0.0006 6 7 3.5101 -0.6916 0.0003 7 6 2.2670 -1.0879 0.0002 8 6 1.8024 -2.5215 0.0005 9 7 1.6520 -2.9863 -1.3807 10 6 1.2440 -4.2472 -1.6267 11 8 1.0002 -4.9985 -0.7025 12 6 1.0920 -4.7154 -3.0186 13 6 1.3669 -3.8463 -4.0813 14 6 1.2326 -4.2756 -5.3681 15 6 0.8063 -5.5931 -5.6278 16 6 0.6601 -6.0404 -6.9581 17 1 -0.0133 -6.8541 -7.1833 18 6 1.3893 -5.4284 -7.9878 19 7 2.4394 -4.7048 -7.7036 20 14 0.8595 -5.6479 -9.7655 21 1 -0.5182 -5.1217 -9.9400 22 1 1.7887 -4.9051 -10.6543 23 1 0.8864 -7.0908 -10.1155 24 6 0.5257 -6.4623 -4.5552 25 6 0.6683 -6.0257 -3.2718 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5141 28 1 -0.3634 0.8903 0.5134 29 1 4.4381 1.2599 -0.0034 30 1 2.5369 -3.1415 0.5145 31 1 0.8436 -2.5927 0.5142 32 1 1.8462 -2.3868 -2.1180 33 1 1.6899 -2.8353 -3.8812 34 1 1.4485 -3.6056 -6.1872 35 1 2.9435 -4.2812 -8.4158 36 1 0.1982 -7.4730 -4.7494 37 1 0.4531 -6.6912 -2.4487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758962002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:58 Heat of formation + Delta-G solvation = 19.345039 kcal Electronic energy + Delta-G solvation = -22922.207440 eV Core-core repulsion = 19304.317737 eV Total energy + Delta-G solvation = -3617.889703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.39448 -40.74923 -38.92123 -37.88466 -35.94664 -35.67088 -35.22754 -32.41567 -31.31769 -31.00475 -28.44893 -27.93142 -26.66862 -23.65641 -22.80889 -22.69512 -21.43686 -21.22048 -19.36434 -18.88561 -18.06087 -17.56162 -17.12823 -16.58726 -16.51300 -15.79529 -15.71327 -15.54755 -15.10494 -15.01891 -14.45825 -14.19315 -14.08448 -13.91896 -13.84312 -13.67401 -13.49113 -13.17760 -13.01290 -12.84830 -12.63441 -12.58074 -12.36073 -11.79456 -11.37064 -11.23966 -11.11835 -10.84430 -10.81928 -10.19904 -9.57398 -9.53444 -9.41128 -8.79370 -6.48341 0.43327 0.44114 0.52863 1.15909 1.39156 1.44480 1.52521 1.65416 1.77745 2.10943 2.17557 2.50132 2.78106 3.08261 3.67356 3.70600 3.73204 4.13082 4.23253 4.29182 4.31140 4.40471 4.46325 4.50918 4.62262 4.91303 4.93180 5.02902 5.15655 5.29736 5.34357 5.36537 5.58755 5.74949 5.81901 5.93690 5.99715 6.23022 6.53822 6.58294 6.73562 6.77272 6.88904 7.35893 8.15432 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.016003 B = 0.002775 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.234182 B =10089.203280 C =11217.715481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.439 5.439 3 C 0.018 3.982 4 Cl 0.014 6.986 5 C -0.007 4.007 6 N -0.492 5.492 7 C 0.200 3.800 8 C 0.216 3.784 9 N -0.722 5.722 10 C 0.581 3.419 11 O -0.596 6.596 12 C -0.293 4.293 13 C -0.053 4.053 14 C -0.199 4.199 15 C 0.102 3.898 16 C -0.473 4.473 17 H 0.087 0.913 18 C 0.038 3.962 19 N -0.798 5.798 20 Si 0.987 3.013 21 H -0.257 1.257 22 H -0.265 1.265 23 H -0.258 1.258 24 C -0.253 4.253 25 C -0.029 4.029 26 H 0.093 0.907 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.201 0.799 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.405 0.595 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.297 0.703 36 H 0.105 0.895 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.731 14.835 9.315 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.124 5.124 3 C -0.124 4.124 4 Cl 0.042 6.958 5 C -0.157 4.157 6 N -0.212 5.212 7 C -0.062 4.062 8 C 0.091 3.909 9 N -0.376 5.376 10 C 0.375 3.625 11 O -0.480 6.480 12 C -0.297 4.297 13 C -0.072 4.072 14 C -0.218 4.218 15 C 0.099 3.901 16 C -0.500 4.500 17 H 0.105 0.895 18 C -0.182 4.182 19 N -0.421 5.421 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.189 1.189 23 H -0.182 1.182 24 C -0.273 4.273 25 C -0.048 4.048 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.218 0.782 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.241 0.759 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.238 14.100 9.901 17.374 hybrid contribution -0.583 0.834 -1.036 1.453 sum -2.821 14.935 8.865 17.595 Atomic orbital electron populations 1.22533 0.73714 1.06804 1.05652 1.45314 1.09265 1.04795 1.53005 1.21970 0.91223 0.83388 1.15852 1.98395 1.91530 1.08527 1.97355 1.22627 0.95851 0.90474 1.06778 1.70409 1.19229 1.12178 1.19350 1.22876 0.85761 0.90283 1.07259 1.19400 1.02395 0.84611 0.84500 1.45725 1.70254 1.13511 1.08069 1.18266 0.74794 0.80706 0.88780 1.90635 1.54418 1.55964 1.46949 1.19106 1.22143 0.97252 0.91201 1.20661 0.96523 0.97612 0.92387 1.20992 1.08711 0.96380 0.95714 1.18126 0.87007 0.91466 0.93478 1.20111 1.21631 1.16170 0.92094 0.89518 1.26942 0.92642 0.92161 1.06417 1.69769 1.11694 1.22570 1.38110 0.85157 0.79538 0.79935 0.74656 1.18152 1.18924 1.18236 1.20871 1.14442 0.99466 0.92494 1.20516 0.94115 0.94238 0.95929 0.88897 0.87445 0.87350 0.78242 0.89160 0.88335 0.75883 0.86652 0.87078 0.89209 0.87644 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.68 10.84 127.77 1.39 2.07 16 2 N -0.44 -8.65 3.16 -526.50 -1.66 -10.31 16 3 C 0.02 0.35 7.49 83.11 0.62 0.97 16 4 Cl 0.01 0.21 28.93 -2.72 -0.08 0.13 16 5 C -0.01 -0.15 11.86 83.55 0.99 0.84 16 6 N -0.49 -13.54 11.25 -187.94 -2.11 -15.66 16 7 C 0.20 4.90 7.27 138.10 1.00 5.91 16 8 C 0.22 5.61 5.98 85.63 0.51 6.13 16 9 N -0.72 -22.50 5.50 -469.88 -2.58 -25.08 16 10 C 0.58 23.15 7.76 86.72 0.67 23.82 16 11 O -0.60 -26.49 16.32 -3.98 -0.06 -26.56 16 12 C -0.29 -12.95 5.89 -19.93 -0.12 -13.07 16 13 C -0.05 -2.29 9.47 22.25 0.21 -2.08 16 14 C -0.20 -9.74 8.64 22.47 0.19 -9.55 16 15 C 0.10 5.25 5.57 -21.28 -0.12 5.14 16 16 C -0.47 -23.61 9.04 23.46 0.21 -23.40 16 17 H 0.09 4.12 7.91 -2.91 -0.02 4.10 16 18 C 0.04 1.73 5.14 85.35 0.44 2.17 16 19 N -0.80 -38.16 10.95 21.87 0.24 -37.92 16 20 Si 0.99 34.47 29.60 68.60 2.03 36.50 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 22 H -0.27 -8.72 7.11 99.48 0.71 -8.01 16 23 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 24 C -0.25 -12.31 9.73 22.47 0.22 -12.09 16 25 C -0.03 -1.34 9.52 22.25 0.21 -1.13 16 26 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.11 1.17 7.05 -2.39 -0.02 1.15 16 28 H 0.11 0.98 7.92 -2.38 -0.02 0.96 16 29 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.09 2.55 8.14 -2.38 -0.02 2.54 16 31 H 0.10 2.21 7.07 -2.39 -0.02 2.19 16 32 H 0.40 11.96 6.46 -92.71 -0.60 11.36 16 33 H 0.12 4.22 6.37 -2.91 -0.02 4.20 16 34 H 0.11 5.57 6.16 -2.91 -0.02 5.55 16 35 H 0.30 12.68 8.29 -92.71 -0.77 11.91 16 36 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.11 4.78 7.63 -2.91 -0.02 4.76 16 Total: -1.00 -62.13 338.51 2.74 -59.39 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.53 Total: 33.78 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 6.44 Total: -14.28 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -6.12 Total: -88.96 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.06 Total: -26.56 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.08 Total: 0.13 kcal Total: -62.13 2.74 -59.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758962002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.736 kcal (2) G-P(sol) polarization free energy of solvation -62.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds