Wall clock time and date at job start Tue Mar 31 2020 13:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39372 * 120.21441 * 243.83915 * 3 2 1 5 5 C 1.38108 * 119.98862 * 180.02562 * 4 3 2 6 6 C 1.38477 * 120.43504 * 0.02562 * 5 4 3 7 7 C 1.38074 * 120.43818 * 359.71621 * 6 5 4 8 8 C 1.39366 * 119.99779 * 0.56052 * 7 6 5 9 9 C 1.47846 * 120.21507 * 179.71609 * 8 7 6 10 10 O 1.21739 * 120.00190 * 179.72825 * 9 8 7 11 11 C 1.46199 * 120.00251 * 359.72962 * 9 8 7 12 12 C 1.35109 * 120.00215 * 179.97438 * 11 9 8 13 13 C 1.47100 * 119.99832 * 180.02562 * 12 11 9 14 14 C 1.39976 * 120.14648 * 359.97438 * 13 12 11 15 15 C 1.37908 * 119.96272 * 179.72948 * 14 13 12 16 16 C 1.38310 * 120.24937 * 359.97438 * 15 14 13 17 17 C 1.39024 * 120.28985 * 359.97438 * 16 15 14 18 18 O 1.35763 * 119.97891 * 180.02562 * 17 16 15 19 19 C 1.34832 * 116.99710 * 174.45904 * 18 17 16 20 20 H 1.07996 * 119.99760 * 5.05737 * 19 18 17 21 21 C 1.38658 * 119.99717 * 185.05757 * 19 18 17 22 22 N 1.31558 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99891 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47120 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47220 * 119.99751 * 23 21 19 26 26 H 1.48496 * 109.47103 * 240.00319 * 23 21 19 27 27 C 1.38545 * 120.03605 * 0.04873 * 17 16 15 28 28 H 1.07995 * 120.00604 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.78330 * 179.97438 * 5 4 3 30 30 H 1.07997 * 119.78154 * 180.02562 * 6 5 4 31 31 H 1.08004 * 120.00488 * 180.30441 * 7 6 5 32 32 H 1.08007 * 119.99620 * 359.97438 * 11 9 8 33 33 H 1.07997 * 120.00158 * 0.02562 * 12 11 9 34 34 H 1.08000 * 120.02061 * 359.70744 * 14 13 12 35 35 H 1.07998 * 119.88000 * 180.02562 * 15 14 13 36 36 H 1.07995 * 119.85311 * 180.02562 * 16 15 14 37 37 H 0.96997 * 120.00012 * 180.02562 * 22 21 19 38 38 H 1.08002 * 120.12076 * 179.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.5320 1.0810 5 6 4.6502 0.5307 1.0759 6 6 5.3472 0.0043 0.0013 7 6 4.6706 -0.5314 -1.0765 8 6 3.2771 -0.5342 -1.0930 9 6 2.5478 -1.1009 -2.2475 10 8 1.3304 -1.1059 -2.2556 11 6 3.2885 -1.6554 -3.3794 12 6 2.6220 -2.1738 -4.4342 13 6 3.3674 -2.7322 -5.5728 14 6 4.7671 -2.7276 -5.5669 15 6 5.4621 -3.2572 -6.6339 16 6 4.7812 -3.7942 -7.7114 17 6 3.3911 -3.8051 -7.7277 18 8 2.7292 -4.3343 -8.7883 19 6 1.3870 -4.4187 -8.6921 20 1 0.8797 -3.9995 -7.8358 21 6 0.6582 -5.0438 -9.6924 22 7 1.2763 -5.5550 -10.7352 23 14 -1.2014 -5.1601 -9.5594 24 1 -1.6491 -4.5130 -8.3000 25 1 -1.8246 -4.4722 -10.7186 26 1 -1.6089 -6.5881 -9.5536 27 6 2.6810 -3.2759 -6.6623 28 1 2.7326 0.9454 1.9221 29 1 5.1902 0.9436 1.9151 30 1 6.4271 0.0083 0.0085 31 1 5.2213 -0.9445 -1.9088 32 1 4.3685 -1.6507 -3.3724 33 1 1.5421 -2.1781 -4.4414 34 1 5.3026 -2.3093 -4.7275 35 1 6.5420 -3.2533 -6.6278 36 1 5.3319 -4.2076 -8.5434 37 1 0.7664 -5.9919 -11.4352 38 1 1.6010 -3.2833 -6.6737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799498817.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:03 Heat of formation + Delta-G solvation = 39.383205 kcal Electronic energy + Delta-G solvation = -23584.516683 eV Core-core repulsion = 19937.635999 eV Total energy + Delta-G solvation = -3646.880684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.51153 -39.20805 -38.49324 -36.81264 -36.44807 -33.69055 -32.33081 -32.00569 -31.77289 -29.80749 -28.72010 -25.83864 -25.25443 -23.80982 -23.28547 -21.80978 -20.89092 -19.19682 -19.04812 -17.84814 -17.41755 -16.63215 -16.13791 -15.39179 -15.31783 -15.09568 -14.92816 -14.67316 -14.43167 -14.11239 -13.81368 -13.73281 -13.67527 -13.37059 -12.96527 -12.87348 -12.59152 -12.51579 -12.29425 -12.15042 -11.79415 -11.76051 -11.62933 -11.08261 -10.91247 -10.74570 -10.46456 -9.92472 -9.91001 -9.52938 -9.51071 -9.41720 -8.91249 -7.99959 -7.39835 -6.53068 -4.13046 -0.06063 0.54261 0.91394 2.12924 2.26662 2.63039 2.69731 3.07802 3.11807 3.16231 3.17139 3.59153 3.65041 3.72888 3.91026 4.30730 4.46013 4.46362 4.65598 4.84922 4.92708 4.99337 5.04100 5.12606 5.16359 5.33540 5.39989 5.56490 5.66847 5.68983 5.75788 5.85017 5.93090 5.99682 6.22650 6.25048 6.35327 6.56809 6.64770 6.93232 7.04483 7.15693 7.27292 7.40468 7.43055 7.58840 7.90233 8.92420 9.58575 10.64441 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.016594 B = 0.002614 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.901578 B =10707.716210 C =12379.037062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.247 3.753 3 C 0.025 3.975 4 C -0.085 4.085 5 C -0.095 4.095 6 C -0.105 4.105 7 C -0.072 4.072 8 C -0.110 4.110 9 C 0.416 3.584 10 O -0.453 6.453 11 C -0.267 4.267 12 C 0.026 3.974 13 C -0.054 4.054 14 C -0.183 4.183 15 C -0.084 4.084 16 C -0.171 4.171 17 C 0.145 3.855 18 O -0.174 6.174 19 C -0.395 4.395 20 H 0.093 0.907 21 C 0.042 3.958 22 N -0.860 5.860 23 Si 0.940 3.060 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.198 4.198 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.271 0.729 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.445 10.578 20.742 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.068 4.068 3 C 0.022 3.978 4 C -0.106 4.106 5 C -0.113 4.113 6 C -0.124 4.124 7 C -0.090 4.090 8 C -0.114 4.114 9 C 0.298 3.702 10 O -0.331 6.331 11 C -0.285 4.285 12 C 0.008 3.992 13 C -0.055 4.055 14 C -0.202 4.202 15 C -0.102 4.102 16 C -0.191 4.191 17 C 0.091 3.909 18 O -0.077 6.077 19 C -0.471 4.471 20 H 0.110 0.890 21 C -0.163 4.163 22 N -0.494 5.494 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.217 4.217 28 H 0.156 0.844 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.046 10.353 20.284 24.504 hybrid contribution -0.371 -0.082 0.018 0.380 sum 8.675 10.271 20.302 24.350 Atomic orbital electron populations 1.81165 1.11956 1.06491 1.07252 1.25300 0.92458 0.94959 0.94091 1.16069 0.84993 1.01141 0.95594 1.21193 0.94515 0.97980 0.96887 1.21333 0.93477 0.97833 0.98678 1.21424 1.00920 0.96851 0.93174 1.21501 0.92282 0.96442 0.98769 1.20632 0.94634 1.00943 0.95152 1.20448 0.88334 0.75820 0.85574 1.90718 1.15660 1.47392 1.79341 1.23122 1.01029 1.08371 0.96001 1.22788 1.00140 0.86137 0.90167 1.18678 0.93160 0.99983 0.93649 1.20824 0.92691 1.06861 0.99798 1.20603 0.98755 0.97623 0.93198 1.20451 0.91641 1.06553 1.00416 1.19264 0.91819 0.92335 0.87443 1.84003 1.21489 1.69312 1.32946 1.21373 0.78439 1.38760 1.08540 0.88965 1.25292 1.00614 0.95595 0.94824 1.70039 1.36380 1.34388 1.08584 0.85654 0.80466 0.78550 0.78878 1.18966 1.20021 1.20021 1.21452 1.00709 1.04807 0.94769 0.84432 0.84479 0.84472 0.83708 0.84564 0.85301 0.86869 0.86466 0.86151 0.91926 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.27 18.41 41.84 0.77 -5.50 16 2 C 0.25 3.30 12.77 -22.47 -0.29 3.01 16 3 C 0.03 0.25 5.76 -106.57 -0.61 -0.36 16 4 C -0.09 -0.53 9.75 -39.21 -0.38 -0.91 16 5 C -0.10 -0.40 10.03 -39.54 -0.40 -0.80 16 6 C -0.11 -0.47 10.02 -39.55 -0.40 -0.86 16 7 C -0.07 -0.47 9.45 -39.22 -0.37 -0.84 16 8 C -0.11 -1.09 5.91 -104.56 -0.62 -1.71 16 9 C 0.42 5.45 7.04 -32.46 -0.23 5.22 16 10 O -0.45 -7.64 14.22 5.15 0.07 -7.57 16 11 C -0.27 -3.29 8.90 -37.50 -0.33 -3.62 16 12 C 0.03 0.40 9.46 -37.10 -0.35 0.05 16 13 C -0.05 -0.94 5.87 -105.08 -0.62 -1.55 16 14 C -0.18 -2.77 9.41 -39.05 -0.37 -3.14 16 15 C -0.08 -1.32 10.02 -39.68 -0.40 -1.72 16 16 C -0.17 -3.34 9.99 -39.26 -0.39 -3.73 16 17 C 0.15 3.33 6.64 -39.18 -0.26 3.07 16 18 O -0.17 -4.80 9.76 0.00 0.00 -4.80 16 19 C -0.40 -10.79 9.48 30.89 0.29 -10.50 16 20 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.13 5.49 -17.51 -0.10 1.03 16 22 N -0.86 -24.75 13.67 55.48 0.76 -23.99 16 23 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 C -0.20 -4.11 8.91 -38.89 -0.35 -4.46 16 28 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 29 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 30 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 31 H 0.15 0.69 6.22 -52.48 -0.33 0.36 16 32 H 0.14 1.27 4.34 -52.48 -0.23 1.04 16 33 H 0.13 2.04 7.52 -52.49 -0.39 1.64 16 34 H 0.11 1.30 6.16 -52.49 -0.32 0.98 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.13 2.80 5.63 -52.49 -0.30 2.51 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -33.68 345.50 -7.47 -41.14 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -3.09 Total: 1.91 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -6.16 Total: -21.82 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 1.53 Total: -29.49 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.37 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.68 -7.47 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799498817.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.525 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds