Wall clock time and date at job start Tue Mar 31 2020 13:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99879 * 2 1 4 4 H 1.48500 * 109.46703 * 270.00083 * 3 2 1 5 5 H 1.48493 * 109.47316 * 30.00283 * 3 2 1 6 6 H 1.48497 * 109.46780 * 150.00377 * 3 2 1 7 7 C 1.37880 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47396 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47705 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00550 * 180.02562 * 11 10 9 13 13 O 1.21861 * 119.99764 * 359.97438 * 12 11 10 14 14 C 1.41249 * 120.00797 * 179.97438 * 12 11 10 15 15 C 1.35119 * 117.13501 * 186.74921 * 14 12 11 16 16 C 1.47668 * 119.01468 * 0.93195 * 15 14 12 17 17 C 1.39658 * 120.14768 * 248.32385 * 16 15 14 18 18 C 1.37936 * 119.84275 * 179.77104 * 17 16 15 19 19 C 1.38376 * 120.15342 * 0.52578 * 18 17 16 20 20 C 1.38371 * 120.30692 * 359.70389 * 19 18 17 21 21 C 1.37932 * 120.15328 * 0.04409 * 20 19 18 22 22 S 1.76175 * 121.97036 * 180.96197 * 15 14 12 23 23 C 1.81357 * 99.44148 * 343.96042 * 22 15 14 24 24 C 1.53547 * 107.93625 * 46.85837 * 23 22 15 25 25 O 1.34820 * 117.12409 * 6.73345 * 14 12 11 26 26 H 0.97001 * 120.00229 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47446 * 59.99918 * 9 7 2 28 28 H 1.09000 * 109.47574 * 300.00092 * 9 7 2 29 29 H 1.09002 * 109.47095 * 59.99452 * 10 9 7 30 30 H 1.09001 * 109.47143 * 300.00311 * 10 9 7 31 31 H 0.97001 * 119.99947 * 359.97438 * 11 10 9 32 32 H 1.08004 * 120.07561 * 0.02562 * 17 16 15 33 33 H 1.08001 * 119.92499 * 180.27432 * 18 17 16 34 34 H 1.07997 * 119.84455 * 179.72507 * 19 18 17 35 35 H 1.08000 * 119.92609 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.07972 * 180.02562 * 21 20 19 37 37 H 1.08990 * 109.76840 * 287.24794 * 23 22 15 38 38 H 1.09000 * 109.76612 * 166.46612 * 23 22 15 39 39 H 1.08994 * 109.56751 * 51.65371 * 24 23 22 40 40 H 1.08999 * 109.56054 * 171.99865 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1866 -6.0980 -0.0007 13 8 3.4052 -6.0981 -0.0003 14 6 1.4804 -7.3213 -0.0008 15 6 2.2065 -8.4520 0.1410 16 6 3.6701 -8.3473 0.3064 17 6 4.5241 -8.7982 -0.7025 18 6 5.8902 -8.6930 -0.5434 19 6 6.4152 -8.1524 0.6172 20 6 5.5750 -7.7081 1.6228 21 6 4.2069 -7.8024 1.4749 22 16 1.4593 -10.0475 0.1335 23 6 -0.2685 -9.5681 0.4054 24 6 -0.5933 -8.4091 -0.5479 25 8 0.1411 -7.2580 -0.1419 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8720 -3.6044 0.8894 30 1 2.8719 -3.6044 -0.8905 31 1 0.5428 -4.9309 -0.0011 32 1 4.1157 -9.2244 -1.6070 33 1 6.5517 -9.0371 -1.3246 34 1 7.4857 -8.0765 0.7384 35 1 5.9914 -7.2868 2.5259 36 1 3.5523 -7.4549 2.2604 37 1 -0.4034 -9.2453 1.4376 38 1 -0.9232 -10.4136 0.1943 39 1 -0.3108 -8.6825 -1.5645 40 1 -1.6610 -8.1932 -0.5094 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821848810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:40 Heat of formation + Delta-G solvation = -39.537191 kcal Electronic energy + Delta-G solvation = -24059.376211 eV Core-core repulsion = 20544.517233 eV Total energy + Delta-G solvation = -3514.858978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.96279 -39.98537 -39.53013 -36.73072 -34.90003 -34.25486 -32.76308 -31.74780 -31.58850 -30.20485 -27.21646 -25.64548 -24.22543 -23.36251 -23.07415 -22.51110 -20.94764 -19.57199 -18.50814 -18.33551 -17.80710 -17.21033 -16.90857 -16.50996 -16.49345 -16.21798 -15.79477 -15.77643 -15.21985 -14.94051 -14.58981 -14.45922 -14.29340 -14.24317 -13.60500 -13.50077 -13.30438 -13.18690 -12.94952 -12.63184 -12.52986 -12.24698 -12.09521 -11.98794 -11.71805 -11.52042 -11.38227 -11.24987 -10.60984 -10.56769 -10.09713 -9.66626 -9.13251 -8.55664 -8.24066 -6.34851 -0.30359 0.11079 0.61783 0.84122 1.08027 1.41794 1.42371 1.53913 1.83283 2.20815 2.34066 2.51916 2.95773 3.10604 3.39558 3.66547 3.94657 3.99562 4.09402 4.15278 4.24621 4.29097 4.33319 4.48044 4.50238 4.59817 4.65982 4.69066 4.74547 4.83987 5.08710 5.19829 5.24894 5.46434 5.56566 5.59828 5.62057 5.68764 5.77097 5.99998 6.15071 6.18556 6.60542 6.78155 7.13760 7.34491 8.87951 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.003514 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.094745 B = 7965.891124 C = 9643.080906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.144 3.856 11 N -0.704 5.704 12 C 0.547 3.453 13 O -0.536 6.536 14 C 0.040 3.960 15 C -0.122 4.122 16 C -0.006 4.006 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.129 4.129 21 C -0.085 4.085 22 S -0.075 6.075 23 C -0.152 4.152 24 C 0.051 3.949 25 O -0.315 6.315 26 H 0.266 0.734 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.410 0.590 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.164 0.836 39 H 0.084 0.916 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -23.781 0.180 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.021 3.979 11 N -0.355 5.355 12 C 0.334 3.666 13 O -0.417 6.417 14 C -0.020 4.020 15 C -0.238 4.238 16 C -0.008 4.008 17 C -0.140 4.140 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.105 4.105 22 S 0.170 5.830 23 C -0.300 4.300 24 C -0.025 4.025 25 O -0.229 6.229 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.246 0.754 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.182 0.818 39 H 0.102 0.898 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.102 -24.726 0.080 24.816 hybrid contribution -0.830 2.219 0.171 2.376 sum 1.272 -22.507 0.251 22.544 Atomic orbital electron populations 1.70066 1.07586 1.28006 1.50981 1.25874 0.95778 1.03097 0.94352 0.85441 0.78647 0.78404 0.78546 1.19741 1.20472 1.19001 1.21450 0.93581 0.91817 1.51594 0.92226 1.19122 0.94211 0.91856 0.96208 1.21240 0.94938 0.81787 0.99977 1.46137 1.11160 1.05583 1.72585 1.16718 0.87486 0.83961 0.78435 1.91006 1.12955 1.86581 1.51147 1.18874 0.84080 0.93226 1.05859 1.22456 0.97193 0.96463 1.07687 1.18040 0.89021 0.98448 0.95312 1.21202 0.93943 1.00930 0.97923 1.21248 0.94689 0.99951 0.98364 1.21423 1.00624 0.98700 0.93685 1.21175 0.92985 1.00295 1.00247 1.20990 0.95774 0.97312 0.96395 1.85742 1.04742 1.03668 1.88827 1.24602 0.95541 1.04983 1.04896 1.23530 0.98507 0.83147 0.97280 1.85550 1.14492 1.39973 1.82871 0.92531 0.97516 0.97506 0.93205 0.93322 0.75419 0.85844 0.83853 0.83974 0.84988 0.88023 0.87391 0.81822 0.89824 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.14 6.40 5.61 86.38 0.48 6.89 16 11 N -0.70 -26.66 5.52 -472.40 -2.61 -29.27 16 12 C 0.55 20.01 7.30 84.98 0.62 20.63 16 13 O -0.54 -21.93 11.87 -4.87 -0.06 -21.98 16 14 C 0.04 1.19 6.42 22.29 0.14 1.33 16 15 C -0.12 -3.37 5.59 24.04 0.13 -3.23 16 16 C -0.01 -0.19 3.19 -20.10 -0.06 -0.26 16 17 C -0.12 -3.38 9.79 22.54 0.22 -3.15 16 18 C -0.12 -3.10 10.03 22.23 0.22 -2.88 16 19 C -0.13 -3.12 10.04 22.33 0.22 -2.90 16 20 C -0.13 -3.58 10.03 22.23 0.22 -3.36 16 21 C -0.08 -2.65 7.31 22.54 0.16 -2.49 16 22 S -0.08 -1.49 22.37 -56.49 -1.26 -2.76 16 23 C -0.15 -1.85 6.60 72.17 0.48 -1.38 16 24 C 0.05 0.72 6.92 72.17 0.50 1.22 16 25 O -0.31 -7.64 9.02 -80.87 -0.73 -8.37 16 26 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.41 14.27 7.60 -92.71 -0.70 13.56 16 32 H 0.12 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.16 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.12 8.11 -2.39 -0.02 1.10 16 40 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.02 350.46 2.20 -67.82 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.35 Total: 21.16 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: 4.20 Total: -17.97 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -2.32 Total: -83.82 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.79 Total: -30.35 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -1.26 Total: -2.76 kcal Total: -70.02 2.20 -67.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821848810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.285 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds