Wall clock time and date at job start Tue Mar 31 2020 13:29:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86800 * 120.00386 * 2 1
4 4 H 1.48489 * 109.47403 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.46927 * 299.99922 * 3 2 1
6 6 H 1.48502 * 109.46821 * 59.99751 * 3 2 1
7 7 C 1.37885 * 119.99893 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99802 * 180.02562 * 7 2 1
9 9 C 1.50694 * 119.99977 * 0.02562 * 7 2 1
10 10 O 1.42901 * 110.64214 * 300.70166 * 9 7 2
11 11 C 1.55159 * 110.72065 * 177.55697 * 9 7 2
12 12 C 1.54908 * 101.58352 * 205.95572 * 11 9 7
13 13 N 1.47430 * 104.82883 * 37.01090 * 12 11 9
14 14 C 1.34776 * 125.64573 * 155.83517 * 13 12 11
15 15 O 1.21627 * 120.00100 * 175.87813 * 14 13 12
16 16 C 1.47274 * 120.00396 * 355.88498 * 14 13 12
17 17 C 1.39461 * 120.33931 * 35.82714 * 16 14 13
18 18 C 1.38117 * 120.11495 * 179.73309 * 17 16 14
19 19 C 1.38403 * 120.86571 * 0.57759 * 18 17 16
20 20 F 1.35094 * 119.87639 * 179.72481 * 19 18 17
21 21 C 1.39119 * 120.25676 * 359.69809 * 19 18 17
22 22 O 1.34912 * 133.32700 * 180.02562 * 21 19 18
23 23 C 1.34306 * 110.84028 * 179.97438 * 22 21 19
24 24 C 1.34293 * 110.06776 * 0.02562 * 23 22 21
25 25 C 1.40310 * 119.39942 * 0.02562 * 21 19 18
26 26 C 1.47020 * 108.70622 * 335.86754 * 13 12 11
27 27 H 0.97002 * 120.00223 * 0.02562 * 1 2 3
28 28 H 0.96693 * 114.00406 * 56.85531 * 10 9 7
29 29 H 1.08992 * 111.00484 * 324.03230 * 11 9 7
30 30 H 1.09003 * 111.00155 * 87.84880 * 11 9 7
31 31 H 1.08998 * 110.36735 * 155.84294 * 12 11 9
32 32 H 1.09001 * 110.37009 * 278.17372 * 12 11 9
33 33 H 1.08002 * 119.94662 * 0.02562 * 17 16 14
34 34 H 1.07999 * 119.56752 * 180.25038 * 18 17 16
35 35 H 1.08005 * 124.97022 * 179.97438 * 23 22 21
36 36 H 1.07996 * 126.90416 * 180.02562 * 24 23 22
37 37 H 1.08997 * 109.88498 * 241.64803 * 26 13 12
38 38 H 1.09004 * 109.88306 * 120.47323 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 0.0006
5 1 1.8905 2.3963 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0844 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 8 0.4074 -2.5938 1.1501
11 6 2.2322 -3.6996 -0.0607
12 6 1.3488 -4.7902 -0.7162
13 7 0.5283 -4.0673 -1.7050
14 6 -0.0358 -4.6079 -2.8032
15 8 -0.7567 -3.9318 -3.5121
16 6 0.2206 -6.0173 -3.1450
17 6 0.3543 -6.9732 -2.1383
18 6 0.5892 -8.2946 -2.4642
19 6 0.7073 -8.6899 -3.7853
20 9 0.9426 -9.9869 -4.0812
21 6 0.5840 -7.7569 -4.8099
22 8 0.6493 -7.8447 -6.1546
23 6 0.4617 -6.6417 -6.7215
24 6 0.2656 -5.7110 -5.7735
25 6 0.3397 -6.4125 -4.4914
26 6 0.4280 -2.6590 -1.2952
27 1 -0.4850 0.8400 -0.0004
28 1 -0.2248 -1.8670 1.2349
29 1 3.0946 -3.4677 -0.6855
30 1 2.5459 -3.9991 0.9393
31 1 1.9711 -5.5353 -1.2118
32 1 0.7123 -5.2631 0.0318
33 1 0.2693 -6.6805 -1.1022
34 1 0.6872 -9.0282 -1.6777
35 1 0.4685 -6.4505 -7.7845
36 1 0.0883 -4.6567 -5.9265
37 1 -0.6140 -2.4010 -1.1067
38 1 0.8361 -2.0160 -2.0751
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000823528674.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:40
Heat of formation + Delta-G solvation = -86.680262 kcal
Electronic energy + Delta-G solvation = -26632.481319 eV
Core-core repulsion = 22549.364888 eV
Total energy + Delta-G solvation = -4083.116431 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.105 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-49.15125 -42.62975 -39.78789 -37.76550 -36.98688 -34.43131 -32.73894 -32.24872
-30.97066 -30.01541 -29.54954 -27.82865 -25.41549 -24.16389 -22.83973 -22.66233
-21.67118 -19.76852 -19.24645 -18.14322 -17.75915 -17.26325 -16.80504 -16.66664
-16.37167 -15.60966 -15.34806 -15.09213 -14.98401 -14.86663 -14.31572 -13.50948
-13.40987 -13.25890 -13.11837 -12.89667 -12.86287 -12.50956 -12.34207 -12.08598
-11.83623 -11.60668 -11.43830 -11.11111 -10.84124 -10.71606 -10.52443 -10.23705
-10.23003 -9.55231 -9.38519 -8.94176 -8.73199 -8.39526 -8.32812 -7.97853
-6.34582 -4.43568 0.32443 0.94819 2.14523 2.42987 2.84475 3.16308
3.25802 3.28942 3.37212 3.64771 3.85967 4.22289 4.25502 4.48727
4.68455 4.76039 4.93331 4.93742 5.15404 5.29343 5.40971 5.54166
5.62900 5.69136 5.73024 5.79029 5.90988 5.98811 6.10772 6.21703
6.28878 6.42230 6.68531 6.76991 6.84596 6.87896 7.19660 7.30609
7.67768 7.92871 8.06774 8.54852 8.61807 9.24801 9.34339 10.73068
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.022504 B = 0.003448 C = 0.003179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1243.916703 B = 8118.140609 C = 8804.832476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.071 3.929
3 Si 0.904 3.096
4 H -0.271 1.271
5 H -0.282 1.282
6 H -0.281 1.281
7 C -0.539 4.539
8 H 0.068 0.932
9 C 0.248 3.752
10 O -0.585 6.585
11 C -0.119 4.119
12 C 0.094 3.906
13 N -0.601 5.601
14 C 0.562 3.438
15 O -0.539 6.539
16 C -0.078 4.078
17 C -0.082 4.082
18 C -0.133 4.133
19 C 0.129 3.871
20 F -0.132 7.132
21 C 0.007 3.993
22 O -0.186 6.186
23 C 0.009 3.991
24 C -0.190 4.190
25 C -0.058 4.058
26 C 0.103 3.897
27 H 0.271 0.729
28 H 0.385 0.615
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.068 0.932
32 H 0.070 0.930
33 H 0.154 0.846
34 H 0.154 0.846
35 H 0.215 0.785
36 H 0.169 0.831
37 H 0.068 0.932
38 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.844 -14.476 -6.997 16.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.133 4.133
3 Si 0.731 3.269
4 H -0.196 1.196
5 H -0.207 1.207
6 H -0.207 1.207
7 C -0.577 4.577
8 H 0.086 0.914
9 C 0.208 3.792
10 O -0.395 6.395
11 C -0.157 4.157
12 C -0.029 4.029
13 N -0.333 5.333
14 C 0.350 3.650
15 O -0.418 6.418
16 C -0.082 4.082
17 C -0.100 4.100
18 C -0.152 4.152
19 C 0.109 3.891
20 F -0.110 7.110
21 C -0.041 4.041
22 O -0.088 6.088
23 C -0.056 4.056
24 C -0.209 4.209
25 C -0.060 4.060
26 C -0.018 4.018
27 H 0.081 0.919
28 H 0.237 0.763
29 H 0.096 0.904
30 H 0.097 0.903
31 H 0.086 0.914
32 H 0.088 0.912
33 H 0.171 0.829
34 H 0.172 0.828
35 H 0.231 0.769
36 H 0.186 0.814
37 H 0.086 0.914
38 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 1.673 -14.838 -7.471 16.697
hybrid contribution 0.033 1.393 -0.245 1.415
sum 1.706 -13.445 -7.717 15.596
Atomic orbital electron populations
1.69642 1.06010 1.27950 1.49754 1.25081 0.95052 0.99830 0.93304
0.86343 0.80073 0.82676 0.77813 1.19559 1.20743 1.20689 1.21554
0.93786 0.90042 1.52313 0.91387 1.19492 0.86116 0.92195 0.81430
1.86077 1.53604 1.52785 1.47038 1.22783 0.97576 0.94898 1.00402
1.22608 0.93496 0.95876 0.90923 1.48722 1.49451 1.12808 1.22330
1.17572 0.80853 0.85866 0.80702 1.90780 1.37713 1.62424 1.50924
1.19548 1.02487 0.94784 0.91356 1.21458 0.97128 0.91242 1.00222
1.20839 1.03600 0.97575 0.93148 1.16628 1.05132 0.76814 0.90571
1.91519 1.91949 1.33564 1.93971 1.19365 1.07368 0.94695 0.82634
1.84050 1.75032 1.32940 1.16747 1.24176 1.01023 0.81054 0.99308
1.22690 1.07255 1.01602 0.89366 1.19557 1.01209 0.91662 0.93617
1.23081 1.02008 0.77413 0.99298 0.91931 0.76343 0.90402 0.90294
0.91396 0.91233 0.82888 0.82807 0.76874 0.81366 0.91358 0.91384
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.20 10.97 55.43 0.61 -22.59 16
2 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16
3 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16
4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16
5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
7 C -0.54 -13.62 8.12 -34.44 -0.28 -13.90 16
8 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16
9 C 0.25 5.74 0.86 -89.94 -0.08 5.67 16
10 O -0.59 -14.12 13.09 -35.23 -0.46 -14.58 16
11 C -0.12 -2.23 6.22 -24.58 -0.15 -2.38 16
12 C 0.09 1.53 5.12 -2.53 -0.01 1.52 16
13 N -0.60 -11.86 3.33 -171.83 -0.57 -12.43 16
14 C 0.56 11.03 7.50 -12.59 -0.09 10.93 16
15 O -0.54 -12.29 16.59 5.25 0.09 -12.20 16
16 C -0.08 -1.25 5.54 -104.79 -0.58 -1.83 16
17 C -0.08 -1.03 7.90 -39.17 -0.31 -1.34 16
18 C -0.13 -1.43 9.97 -39.56 -0.39 -1.82 16
19 C 0.13 1.61 7.31 -39.19 -0.29 1.32 16
20 F -0.13 -1.63 17.26 2.25 0.04 -1.59 16
21 C 0.01 0.10 7.38 -38.48 -0.28 -0.18 16
22 O -0.19 -2.41 10.58 4.00 0.04 -2.36 16
23 C 0.01 0.10 11.97 29.34 0.35 0.45 16
24 C -0.19 -2.58 10.57 -37.72 -0.40 -2.98 16
25 C -0.06 -0.89 6.11 -104.89 -0.64 -1.53 16
26 C 0.10 2.40 5.40 -3.06 -0.02 2.39 16
27 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16
28 H 0.39 9.64 7.17 45.56 0.33 9.97 16
29 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16
30 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16
31 H 0.07 0.92 6.58 -51.93 -0.34 0.58 16
32 H 0.07 1.05 7.24 -51.93 -0.38 0.68 16
33 H 0.15 1.72 5.42 -52.49 -0.28 1.44 16
34 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16
35 H 0.21 1.20 8.06 -52.48 -0.42 0.78 16
36 H 0.17 2.32 7.87 -52.49 -0.41 1.90 16
37 H 0.07 1.75 8.01 -51.93 -0.42 1.33 16
38 H 0.07 1.73 7.82 -51.93 -0.41 1.32 16
LS Contribution 326.41 15.07 4.92 4.92
Total: -1.00 -29.93 326.41 -6.77 -36.70
By element:
Atomic # 1 Polarization: 14.34 SS G_CDS: -3.14 Total: 11.20 kcal
Atomic # 6 Polarization: 1.28 SS G_CDS: -3.27 Total: -1.99 kcal
Atomic # 7 Polarization: -35.06 SS G_CDS: 0.04 Total: -35.02 kcal
Atomic # 8 Polarization: -28.82 SS G_CDS: -0.33 Total: -29.15 kcal
Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal
Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -29.93 -6.77 -36.70 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000823528674.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.980 kcal
(2) G-P(sol) polarization free energy of solvation -29.932 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.680 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds