Wall clock time and date at job start Tue Mar 31 2020 13:29:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86800 * 120.00386 * 2 1
4 4 H 1.48489 * 109.47403 * 179.97438 * 3 2 1
5 5 H 1.48495 * 109.46927 * 299.99922 * 3 2 1
6 6 H 1.48502 * 109.46821 * 59.99751 * 3 2 1
7 7 C 1.37885 * 119.99893 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99802 * 180.02562 * 7 2 1
9 9 C 1.50694 * 119.99977 * 0.02562 * 7 2 1
10 10 O 1.42901 * 110.64214 * 300.70166 * 9 7 2
11 11 C 1.55159 * 110.72065 * 177.55697 * 9 7 2
12 12 C 1.54908 * 101.58352 * 205.95572 * 11 9 7
13 13 N 1.47430 * 104.82883 * 37.01090 * 12 11 9
14 14 C 1.34776 * 125.64573 * 155.83517 * 13 12 11
15 15 O 1.21627 * 120.00100 * 175.87813 * 14 13 12
16 16 C 1.47274 * 120.00396 * 355.88498 * 14 13 12
17 17 C 1.39461 * 120.33931 * 35.82714 * 16 14 13
18 18 C 1.38117 * 120.11495 * 179.73309 * 17 16 14
19 19 C 1.38403 * 120.86571 * 0.57759 * 18 17 16
20 20 F 1.35094 * 119.87639 * 179.72481 * 19 18 17
21 21 C 1.39119 * 120.25676 * 359.69809 * 19 18 17
22 22 O 1.34912 * 133.32700 * 180.02562 * 21 19 18
23 23 C 1.34306 * 110.84028 * 179.97438 * 22 21 19
24 24 C 1.34293 * 110.06776 * 0.02562 * 23 22 21
25 25 C 1.40310 * 119.39942 * 0.02562 * 21 19 18
26 26 C 1.47020 * 108.70622 * 335.86754 * 13 12 11
27 27 H 0.97002 * 120.00223 * 0.02562 * 1 2 3
28 28 H 0.96693 * 114.00406 * 56.85531 * 10 9 7
29 29 H 1.08992 * 111.00484 * 324.03230 * 11 9 7
30 30 H 1.09003 * 111.00155 * 87.84880 * 11 9 7
31 31 H 1.08998 * 110.36735 * 155.84294 * 12 11 9
32 32 H 1.09001 * 110.37009 * 278.17372 * 12 11 9
33 33 H 1.08002 * 119.94662 * 0.02562 * 17 16 14
34 34 H 1.07999 * 119.56752 * 180.25038 * 18 17 16
35 35 H 1.08005 * 124.97022 * 179.97438 * 23 22 21
36 36 H 1.07996 * 126.90416 * 180.02562 * 24 23 22
37 37 H 1.08997 * 109.88498 * 241.64803 * 26 13 12
38 38 H 1.09004 * 109.88306 * 120.47323 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 0.0006
5 1 1.8905 2.3963 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0844 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 8 0.4074 -2.5938 1.1501
11 6 2.2322 -3.6996 -0.0607
12 6 1.3488 -4.7902 -0.7162
13 7 0.5283 -4.0673 -1.7050
14 6 -0.0358 -4.6079 -2.8032
15 8 -0.7567 -3.9318 -3.5121
16 6 0.2206 -6.0173 -3.1450
17 6 0.3543 -6.9732 -2.1383
18 6 0.5892 -8.2946 -2.4642
19 6 0.7073 -8.6899 -3.7853
20 9 0.9426 -9.9869 -4.0812
21 6 0.5840 -7.7569 -4.8099
22 8 0.6493 -7.8447 -6.1546
23 6 0.4617 -6.6417 -6.7215
24 6 0.2656 -5.7110 -5.7735
25 6 0.3397 -6.4125 -4.4914
26 6 0.4280 -2.6590 -1.2952
27 1 -0.4850 0.8400 -0.0004
28 1 -0.2248 -1.8670 1.2349
29 1 3.0946 -3.4677 -0.6855
30 1 2.5459 -3.9991 0.9393
31 1 1.9711 -5.5353 -1.2118
32 1 0.7123 -5.2631 0.0318
33 1 0.2693 -6.6805 -1.1022
34 1 0.6872 -9.0282 -1.6777
35 1 0.4685 -6.4505 -7.7845
36 1 0.0883 -4.6567 -5.9265
37 1 -0.6140 -2.4010 -1.1067
38 1 0.8361 -2.0160 -2.0751
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000823528674.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:39
Heat of formation + Delta-G solvation = -107.090017 kcal
Electronic energy + Delta-G solvation = -26633.366353 eV
Core-core repulsion = 22549.364888 eV
Total energy + Delta-G solvation = -4084.001464 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.105 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-50.11749 -43.61136 -41.27044 -39.19719 -38.36201 -36.16419 -34.20428 -33.72639
-32.32990 -31.31337 -30.64188 -29.50704 -27.16754 -25.45901 -24.01189 -23.79795
-22.81862 -21.46975 -20.63041 -19.23146 -19.06041 -18.87329 -18.03241 -17.66434
-17.45855 -17.26482 -16.68989 -16.47502 -16.30553 -16.18235 -15.85234 -14.90353
-14.83433 -14.77932 -14.43807 -14.25604 -13.94638 -13.78425 -13.67098 -13.49241
-13.29322 -13.01655 -12.96884 -12.84602 -12.41042 -12.31445 -12.23817 -12.08746
-11.24283 -11.18527 -11.08587 -10.66000 -10.29632 -9.92001 -9.69016 -9.28540
-8.28293 -6.44219 -0.71694 -0.03011 1.19416 1.39401 1.43314 1.49577
1.53574 1.55565 1.92575 2.36562 2.43338 2.85500 2.98607 3.28401
3.45238 3.63452 3.69787 3.78716 4.04221 4.08769 4.17225 4.31421
4.34996 4.50125 4.55786 4.58102 4.67397 4.78332 4.82579 4.99118
5.02384 5.11414 5.22093 5.23043 5.35788 5.37688 5.49683 5.73954
5.88499 6.03006 6.52948 6.64603 7.02655 7.27702 7.35528 8.77783
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.022504 B = 0.003448 C = 0.003179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1243.916703 B = 8118.140609 C = 8804.832476
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C 0.027 3.973
3 Si 0.962 3.038
4 H -0.264 1.264
5 H -0.285 1.285
6 H -0.277 1.277
7 C -0.558 4.558
8 H 0.068 0.932
9 C 0.234 3.766
10 O -0.586 6.586
11 C -0.114 4.114
12 C 0.098 3.902
13 N -0.606 5.606
14 C 0.560 3.440
15 O -0.586 6.586
16 C -0.110 4.110
17 C -0.065 4.065
18 C -0.116 4.116
19 C 0.136 3.864
20 F -0.128 7.128
21 C -0.009 4.009
22 O -0.190 6.190
23 C 0.047 3.953
24 C -0.237 4.237
25 C -0.076 4.076
26 C 0.121 3.879
27 H 0.270 0.730
28 H 0.377 0.623
29 H 0.081 0.919
30 H 0.096 0.904
31 H 0.105 0.895
32 H 0.089 0.911
33 H 0.171 0.829
34 H 0.197 0.803
35 H 0.265 0.735
36 H 0.154 0.846
37 H 0.033 0.967
38 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.282 -17.165 -6.917 18.795
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.174 4.174
3 Si 0.787 3.213
4 H -0.189 1.189
5 H -0.211 1.211
6 H -0.203 1.203
7 C -0.596 4.596
8 H 0.086 0.914
9 C 0.193 3.807
10 O -0.394 6.394
11 C -0.151 4.151
12 C -0.023 4.023
13 N -0.337 5.337
14 C 0.350 3.650
15 O -0.468 6.468
16 C -0.113 4.113
17 C -0.084 4.084
18 C -0.135 4.135
19 C 0.115 3.885
20 F -0.106 7.106
21 C -0.057 4.057
22 O -0.091 6.091
23 C -0.017 4.017
24 C -0.256 4.256
25 C -0.078 4.078
26 C -0.002 4.002
27 H 0.080 0.920
28 H 0.227 0.773
29 H 0.100 0.900
30 H 0.114 0.886
31 H 0.123 0.877
32 H 0.107 0.893
33 H 0.188 0.812
34 H 0.215 0.785
35 H 0.280 0.720
36 H 0.172 0.828
37 H 0.051 0.949
38 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges 3.138 -17.571 -7.372 19.311
hybrid contribution -0.431 2.170 -0.350 2.240
sum 2.707 -15.401 -7.722 17.440
Atomic orbital electron populations
1.69746 1.07101 1.28472 1.50296 1.25801 0.95766 1.02779 0.93081
0.85440 0.79193 0.79087 0.77540 1.18853 1.21087 1.20255 1.21898
0.94037 0.91380 1.52282 0.91379 1.19692 0.86635 0.93641 0.80687
1.86064 1.53549 1.52329 1.47503 1.22782 0.96968 0.93552 1.01830
1.22823 0.93398 0.95461 0.90660 1.48740 1.50107 1.11561 1.23285
1.18231 0.79661 0.87369 0.79699 1.90736 1.39700 1.64123 1.52253
1.19302 1.06464 0.92825 0.92712 1.21650 0.95318 0.91307 1.00093
1.21205 1.01523 0.97364 0.93365 1.16870 1.04015 0.76651 0.90920
1.91535 1.91782 1.33280 1.94032 1.19556 1.08446 0.94435 0.83303
1.84073 1.74838 1.33764 1.16453 1.25008 0.96691 0.79346 1.00670
1.22735 1.10877 1.01805 0.90151 1.19792 1.01398 0.92737 0.93880
1.22568 0.99537 0.79446 0.98659 0.92012 0.77277 0.90021 0.88559
0.87694 0.89267 0.81224 0.78548 0.71978 0.82827 0.94888 0.94808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -49.27 10.97 21.45 0.24 -49.03 16
2 C 0.03 1.37 5.27 84.66 0.45 1.82 16
3 Si 0.96 41.48 29.54 68.60 2.03 43.50 16
4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16
5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16
6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16
7 C -0.56 -28.66 8.12 25.60 0.21 -28.45 16
8 H 0.07 3.41 7.77 -2.91 -0.02 3.38 16
9 C 0.23 10.98 0.86 -10.35 -0.01 10.97 16
10 O -0.59 -28.63 13.09 -148.98 -1.95 -30.58 16
11 C -0.11 -4.09 6.22 31.99 0.20 -3.89 16
12 C 0.10 2.98 5.12 86.85 0.44 3.43 16
13 N -0.61 -24.23 3.33 -815.81 -2.71 -26.95 16
14 C 0.56 22.62 7.50 86.62 0.65 23.27 16
15 O -0.59 -28.44 16.59 -4.12 -0.07 -28.51 16
16 C -0.11 -3.42 5.54 -19.97 -0.11 -3.53 16
17 C -0.07 -1.44 7.90 22.54 0.18 -1.27 16
18 C -0.12 -2.01 9.97 22.28 0.22 -1.79 16
19 C 0.14 2.96 7.31 22.52 0.16 3.13 16
20 F -0.13 -2.72 17.26 44.97 0.78 -1.94 16
21 C -0.01 -0.25 7.38 22.99 0.17 -0.08 16
22 O -0.19 -4.50 10.58 -8.59 -0.09 -4.59 16
23 C 0.05 0.91 11.97 66.92 0.80 1.71 16
24 C -0.24 -6.51 10.57 23.47 0.25 -6.26 16
25 C -0.08 -2.30 6.11 -20.04 -0.12 -2.42 16
26 C 0.12 5.91 5.40 86.73 0.47 6.38 16
27 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16
28 H 0.38 19.55 7.17 -74.06 -0.53 19.02 16
29 H 0.08 2.86 8.04 -2.39 -0.02 2.84 16
30 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16
31 H 0.11 2.47 6.58 -2.39 -0.02 2.45 16
32 H 0.09 2.41 7.24 -2.39 -0.02 2.39 16
33 H 0.17 3.15 5.42 -2.91 -0.02 3.13 16
34 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16
35 H 0.26 2.02 8.06 -2.91 -0.02 1.99 16
36 H 0.15 4.58 7.87 -2.91 -0.02 4.55 16
37 H 0.03 1.80 8.01 -2.39 -0.02 1.78 16
38 H 0.03 1.83 7.82 -2.38 -0.02 1.81 16
Total: -1.00 -69.46 326.41 2.77 -66.68
By element:
Atomic # 1 Polarization: 27.81 SS G_CDS: 0.60 Total: 28.41 kcal
Atomic # 6 Polarization: -0.95 SS G_CDS: 3.96 Total: 3.01 kcal
Atomic # 7 Polarization: -73.50 SS G_CDS: -2.48 Total: -75.98 kcal
Atomic # 8 Polarization: -61.58 SS G_CDS: -2.11 Total: -63.68 kcal
Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal
Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal
Total: -69.46 2.77 -66.68 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000823528674.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.405 kcal
(2) G-P(sol) polarization free energy of solvation -69.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.863 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.090 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds