Wall clock time and date at job start Tue Mar 31 2020 13:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39798 * 120.06246 * 77.55836 * 3 2 1 5 5 C 1.38105 * 120.20256 * 179.97438 * 4 3 2 6 6 C 1.38016 * 120.33610 * 359.97438 * 5 4 3 7 7 C 1.39965 * 120.12905 * 0.02562 * 6 5 4 8 8 C 1.47142 * 120.09861 * 180.02562 * 7 6 5 9 9 C 1.35037 * 119.99874 * 311.77752 * 8 7 6 10 10 C 1.46260 * 120.00218 * 348.96278 * 9 8 7 11 11 O 1.21772 * 119.99984 * 353.33105 * 10 9 8 12 12 C 1.47649 * 119.99925 * 173.33771 * 10 9 8 13 13 C 1.39813 * 120.07825 * 359.71772 * 12 10 9 14 14 C 1.37635 * 119.92188 * 179.78881 * 13 12 10 15 15 C 1.39165 * 120.07611 * 0.46859 * 14 13 12 16 16 O 1.35559 * 119.92235 * 179.76266 * 15 14 13 17 17 C 1.34766 * 117.00298 * 174.43368 * 16 15 14 18 18 H 1.08003 * 119.99836 * 5.08870 * 17 16 15 19 19 C 1.38754 * 120.00179 * 185.08490 * 17 16 15 20 20 N 1.31479 * 120.00149 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47270 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46965 * 120.00395 * 21 19 17 24 24 H 1.48510 * 109.47237 * 239.99933 * 21 19 17 25 25 C 1.39164 * 120.15807 * 359.78624 * 15 14 13 26 26 C 1.37629 * 120.07668 * 359.97438 * 25 15 14 27 27 C 1.39283 * 120.06894 * 257.53302 * 3 2 1 28 28 H 1.07999 * 119.90169 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.82933 * 180.02562 * 5 4 3 30 30 H 1.08007 * 119.93385 * 180.27278 * 6 5 4 31 31 H 1.08003 * 119.99916 * 131.78991 * 8 7 6 32 32 H 1.08001 * 119.99150 * 168.95465 * 9 8 7 33 33 H 1.08006 * 120.04208 * 0.02768 * 13 12 10 34 34 H 1.08004 * 119.96195 * 180.23144 * 14 13 12 35 35 H 0.97001 * 120.00278 * 179.97438 * 20 19 17 36 36 H 1.07997 * 119.96340 * 179.97438 * 25 15 14 37 37 H 1.07998 * 120.04184 * 179.97438 * 26 25 15 38 38 H 1.07999 * 120.16633 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2684 -0.2597 -1.1815 5 6 4.6494 -0.2593 -1.1849 6 6 5.3493 -0.0017 -0.0236 7 6 4.6622 0.2607 1.1672 8 6 5.4090 0.5359 2.4048 9 6 6.4244 -0.2738 2.7748 10 6 6.6299 -1.5492 2.0890 11 8 5.8174 -1.9376 1.2694 12 6 7.8225 -2.3658 2.3906 13 6 8.7593 -1.9187 3.3272 14 6 9.8676 -2.6846 3.6091 15 6 10.0612 -3.8981 2.9560 16 8 11.1564 -4.6477 3.2325 17 6 11.2281 -5.8628 2.6542 18 1 10.4766 -6.1664 1.9404 19 6 12.2675 -6.7240 2.9758 20 7 13.1822 -6.3547 3.8451 21 14 12.3664 -8.4086 2.1748 22 1 11.2248 -8.5804 1.2408 23 1 13.6421 -8.5253 1.4235 24 1 12.3115 -9.4592 3.2230 25 6 9.1335 -4.3438 2.0193 26 6 8.0205 -3.5854 1.7361 27 6 3.2657 0.2612 1.1770 28 1 2.7279 -0.4618 -2.0944 29 1 5.1844 -0.4608 -2.1012 30 1 6.4293 0.0014 -0.0346 31 1 5.1449 1.3853 3.0174 32 1 7.0848 0.0206 3.5770 33 1 8.6116 -0.9752 3.8317 34 1 10.5898 -2.3416 4.3351 35 1 13.9086 -6.9568 4.0702 36 1 9.2871 -5.2859 1.5140 37 1 7.3011 -3.9317 1.0088 38 1 2.7295 0.4629 2.0925 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834741428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:00 Heat of formation + Delta-G solvation = 43.102859 kcal Electronic energy + Delta-G solvation = -23759.478555 eV Core-core repulsion = 20112.759167 eV Total energy + Delta-G solvation = -3646.719388 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.100 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.13664 -39.29967 -38.47353 -36.66362 -36.23040 -34.00444 -32.58738 -31.48388 -30.77736 -30.20942 -29.09269 -25.76446 -24.76242 -23.89638 -22.62248 -22.07394 -21.09024 -19.53021 -18.37065 -17.81254 -17.19188 -16.62299 -16.36655 -15.54109 -15.24631 -14.72704 -14.50297 -14.34985 -14.11504 -14.05805 -14.02895 -13.73219 -13.43590 -13.27142 -13.06433 -12.96002 -12.82297 -12.64300 -12.33123 -11.89110 -11.68755 -11.65044 -11.42840 -11.35148 -10.97678 -10.77289 -10.57271 -10.05521 -9.59283 -9.45116 -9.11920 -9.05098 -8.42418 -8.34737 -7.46819 -6.71592 -4.26651 0.37226 0.81345 1.27676 1.93782 2.11278 2.45844 2.82784 2.98535 3.01809 3.07780 3.39016 3.63615 3.75929 3.77698 4.37774 4.46934 4.47772 4.65099 4.82636 4.87154 4.97894 5.00192 5.14553 5.27547 5.46065 5.54310 5.55671 5.57795 5.72564 5.89270 5.99206 6.02600 6.11436 6.17114 6.22151 6.39320 6.44705 6.61414 6.69848 6.85607 6.94146 7.17034 7.20422 7.27345 7.57819 7.74295 7.99740 8.73327 9.39038 10.44748 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.024578 B = 0.002296 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.975237 B =12194.712637 C =12886.668324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.261 3.739 3 C -0.043 4.043 4 C -0.064 4.064 5 C -0.125 4.125 6 C -0.025 4.025 7 C -0.057 4.057 8 C -0.052 4.052 9 C -0.202 4.202 10 C 0.419 3.581 11 O -0.472 6.472 12 C -0.271 4.271 13 C -0.028 4.028 14 C -0.206 4.206 15 C 0.175 3.825 16 O -0.159 6.159 17 C -0.393 4.393 18 H 0.099 0.901 19 C 0.042 3.958 20 N -0.849 5.849 21 Si 0.945 3.055 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.250 4.250 26 C -0.007 4.007 27 C -0.057 4.057 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.275 0.725 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 12.860 -4.984 17.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.054 4.054 3 C -0.046 4.046 4 C -0.084 4.084 5 C -0.143 4.143 6 C -0.044 4.044 7 C -0.057 4.057 8 C -0.071 4.071 9 C -0.221 4.221 10 C 0.305 3.695 11 O -0.354 6.354 12 C -0.273 4.273 13 C -0.047 4.047 14 C -0.225 4.225 15 C 0.118 3.882 16 O -0.059 6.059 17 C -0.468 4.468 18 H 0.117 0.883 19 C -0.164 4.164 20 N -0.481 5.481 21 Si 0.769 3.231 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.198 1.198 25 C -0.269 4.269 26 C -0.026 4.026 27 C -0.077 4.077 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.142 0.858 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.085 0.915 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.960 12.575 -5.136 18.774 hybrid contribution 0.720 -0.961 -0.150 1.210 sum -12.240 11.613 -5.286 17.681 Atomic orbital electron populations 1.81241 1.12134 1.09475 1.07593 1.25771 0.92699 0.93329 0.93563 1.15778 0.84023 1.09182 0.95645 1.21181 0.94415 0.96435 0.96383 1.20924 0.93417 1.01231 0.98735 1.21429 1.00020 0.91503 0.91402 1.18807 0.92451 1.00721 0.93747 1.22429 0.92902 0.98240 0.93480 1.23797 0.98914 0.96179 1.03191 1.20300 0.84325 0.85357 0.79557 1.90652 1.43523 1.71541 1.29676 1.19709 0.99909 0.99797 1.07892 1.20848 0.92173 0.97351 0.94330 1.20167 1.01006 0.95655 1.05654 1.19654 0.86077 0.91077 0.91438 1.83890 1.33641 1.27103 1.61253 1.21566 1.12362 0.88976 1.23945 0.88348 1.25424 0.94743 0.99918 0.96357 1.70005 1.11795 1.36816 1.29504 0.85572 0.79003 0.79603 0.78897 1.18781 1.19854 1.19840 1.21124 0.97599 1.03478 1.04727 1.20903 0.94920 0.91780 0.94995 1.21157 0.93014 0.97085 0.96483 0.85344 0.84997 0.85764 0.84615 0.84417 0.86238 0.85973 0.91531 0.85075 0.86383 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.65 18.54 41.84 0.78 -4.88 16 2 C 0.26 2.91 15.32 -22.48 -0.34 2.56 16 3 C -0.04 -0.42 5.72 -107.00 -0.61 -1.03 16 4 C -0.06 -0.56 9.75 -39.05 -0.38 -0.94 16 5 C -0.13 -1.13 10.01 -39.71 -0.40 -1.53 16 6 C -0.02 -0.25 6.76 -39.02 -0.26 -0.52 16 7 C -0.06 -0.57 4.33 -105.11 -0.46 -1.03 16 8 C -0.05 -0.45 9.78 -37.11 -0.36 -0.82 16 9 C -0.20 -2.09 9.39 -37.50 -0.35 -2.44 16 10 C 0.42 5.95 6.28 -32.52 -0.20 5.74 16 11 O -0.47 -7.45 12.46 5.12 0.06 -7.38 16 12 C -0.27 -4.43 5.88 -104.87 -0.62 -5.05 16 13 C -0.03 -0.44 9.44 -39.21 -0.37 -0.81 16 14 C -0.21 -3.87 9.97 -39.46 -0.39 -4.27 16 15 C 0.17 3.88 6.66 -38.89 -0.26 3.63 16 16 O -0.16 -4.18 9.74 0.82 0.01 -4.17 16 17 C -0.39 -10.21 9.48 30.92 0.29 -9.92 16 18 H 0.10 2.36 5.19 -52.48 -0.27 2.09 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 20 N -0.85 -23.22 13.67 55.48 0.76 -22.46 16 21 Si 0.95 19.15 29.55 -169.99 -5.02 14.13 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.25 -5.10 9.15 -39.46 -0.36 -5.46 16 26 C -0.01 -0.13 9.59 -39.21 -0.38 -0.51 16 27 C -0.06 -0.54 9.50 -38.66 -0.37 -0.90 16 28 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.12 1.28 7.46 -52.48 -0.39 0.89 16 31 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.14 1.12 6.35 -52.49 -0.33 0.79 16 33 H 0.12 1.39 6.23 -52.48 -0.33 1.06 16 34 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 35 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.13 2.67 5.62 -52.49 -0.29 2.38 16 37 H 0.12 2.00 7.64 -52.49 -0.40 1.60 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -30.34 344.90 -7.41 -37.75 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.27 Total: 4.12 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -5.92 Total: -22.30 kcal Atomic # 7 Polarization: -28.88 SS G_CDS: 1.53 Total: -27.34 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.07 Total: -11.56 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.34 -7.41 -37.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834741428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.857 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds