Wall clock time and date at job start Tue Mar 31 2020 13:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99990 * 2 1 4 4 H 1.48507 * 109.46773 * 240.00137 * 3 2 1 5 5 H 1.48499 * 109.47178 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47403 * 119.99949 * 3 2 1 7 7 C 1.37880 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00246 * 0.02562 * 7 2 1 10 10 S 1.81404 * 109.46880 * 179.97438 * 9 7 2 11 11 O 1.42098 * 110.54195 * 68.37830 * 10 9 7 12 12 O 1.42099 * 110.54496 * 291.62196 * 10 9 7 13 13 N 1.65608 * 104.44576 * 180.02562 * 10 9 7 14 14 C 1.34775 * 119.99984 * 64.99686 * 13 10 9 15 15 O 1.21605 * 120.00230 * 359.72798 * 14 13 10 16 16 C 1.47303 * 119.99822 * 179.97438 * 14 13 10 17 17 F 1.35105 * 119.99777 * 352.58155 * 16 14 13 18 18 C 1.33108 * 119.99980 * 172.58252 * 16 14 13 19 19 C 1.50696 * 120.00018 * 345.76781 * 18 16 14 20 20 C 1.53000 * 109.47323 * 230.42588 * 19 18 16 21 21 C 1.52996 * 109.47265 * 180.02562 * 20 19 18 22 22 C 1.53005 * 109.47297 * 60.00117 * 21 20 19 23 23 C 1.53000 * 109.46868 * 300.00126 * 22 21 20 24 24 C 1.52996 * 109.47265 * 59.99854 * 23 22 21 25 25 H 0.96998 * 120.00186 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47106 * 59.99750 * 9 7 2 27 27 H 1.08998 * 109.47246 * 299.99831 * 9 7 2 28 28 H 0.97002 * 119.99868 * 245.00505 * 13 10 9 29 29 H 1.07997 * 120.00147 * 165.77145 * 18 16 14 30 30 H 1.08998 * 109.47199 * 350.42823 * 19 18 16 31 31 H 1.08998 * 109.47175 * 300.00250 * 20 19 18 32 32 H 1.09003 * 109.47079 * 60.00095 * 20 19 18 33 33 H 1.08998 * 109.47145 * 300.00166 * 21 20 19 34 34 H 1.09003 * 109.47163 * 180.02562 * 21 20 19 35 35 H 1.09002 * 109.46933 * 179.97438 * 22 21 20 36 36 H 1.08998 * 109.46983 * 59.99950 * 22 21 20 37 37 H 1.08998 * 109.47175 * 299.99706 * 23 22 21 38 38 H 1.08994 * 109.46908 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.47163 * 179.97438 * 24 23 22 40 40 H 1.08998 * 109.47145 * 59.99834 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 16 2.4299 -3.8780 0.0005 11 8 3.1266 -3.9383 1.2375 12 8 3.1266 -3.9384 -1.2364 13 7 1.4795 -5.2342 -0.0002 14 6 0.6891 -5.5026 -1.0583 15 8 0.6701 -4.7464 -2.0105 16 6 -0.1559 -6.7092 -1.0592 17 9 -0.0297 -7.6229 -0.0720 18 6 -1.0436 -6.8993 -2.0326 19 6 -1.4173 -5.7595 -2.9448 20 6 -2.9411 -5.6411 -3.0152 21 6 -3.3205 -4.4843 -3.9418 22 6 -2.7643 -4.7492 -5.3424 23 6 -1.2405 -4.8676 -5.2720 24 6 -0.8611 -6.0244 -4.3453 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5568 0.8903 28 1 1.4916 -5.8353 0.7610 29 1 -1.4962 -7.8704 -2.1686 30 1 -0.9983 -4.8312 -2.5567 31 1 -3.3601 -6.5694 -3.4033 32 1 -3.3374 -5.4528 -2.0174 33 1 -2.9014 -3.5558 -3.5541 34 1 -4.4061 -4.3996 -3.9916 35 1 -3.0350 -3.9252 -6.0026 36 1 -3.1834 -5.6777 -5.7301 37 1 -0.8214 -3.9391 -4.8843 38 1 -0.8443 -5.0568 -6.2696 39 1 0.2245 -6.1091 -4.2955 40 1 -1.2802 -6.9529 -4.7330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:44 Heat of formation + Delta-G solvation = -181.718183 kcal Electronic energy + Delta-G solvation = -25742.108898 eV Core-core repulsion = 21790.315265 eV Total energy + Delta-G solvation = -3951.793633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.98290 -41.57224 -39.37510 -38.16874 -37.12603 -35.78645 -35.45056 -34.60693 -31.57679 -31.14094 -30.41071 -25.99068 -25.48721 -23.42783 -23.21754 -21.62870 -20.80980 -20.68171 -19.37003 -19.16145 -18.40684 -17.69866 -17.09813 -16.97903 -16.86482 -16.36512 -16.17446 -15.99288 -15.67664 -15.00414 -14.96281 -14.53942 -14.41402 -14.29822 -14.14921 -13.77904 -13.52213 -13.48842 -13.27085 -13.16902 -13.10678 -13.02349 -12.74174 -12.60178 -12.42647 -12.04101 -11.95617 -11.87045 -11.47126 -11.20070 -11.15270 -11.08290 -10.80298 -10.70261 -10.13390 -8.43999 -6.63493 -0.84009 -0.21777 1.36378 1.40615 1.41143 1.48744 1.53098 2.28552 2.59268 2.73371 2.89866 3.22452 3.33852 3.74313 3.83331 3.93232 4.01966 4.26084 4.33125 4.43620 4.55972 4.59852 4.64477 4.68752 4.70119 4.73232 4.81609 4.91259 5.12337 5.17363 5.26754 5.32209 5.32995 5.39237 5.43722 5.48656 5.60064 5.65444 5.72972 6.22868 6.45093 7.08252 8.68445 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.004972 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.625696 B = 5630.419033 C = 7207.375765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.570 4.570 8 H 0.068 0.932 9 C -0.415 4.415 10 S 2.594 3.406 11 O -0.978 6.978 12 O -0.978 6.978 13 N -1.043 6.043 14 C 0.556 3.444 15 O -0.489 6.489 16 C -0.032 4.032 17 F -0.128 7.128 18 C -0.041 4.041 19 C -0.099 4.099 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.096 4.096 25 H 0.275 0.725 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.445 0.555 29 H 0.185 0.815 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 -15.344 -6.249 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.176 4.176 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.609 4.609 8 H 0.086 0.914 9 C -0.550 4.550 10 S 2.695 3.305 11 O -0.969 6.969 12 O -0.969 6.969 13 N -0.807 5.807 14 C 0.345 3.655 15 O -0.364 6.364 16 C -0.056 4.056 17 F -0.107 7.107 18 C -0.062 4.062 19 C -0.117 4.117 20 C -0.141 4.141 21 C -0.161 4.161 22 C -0.150 4.150 23 C -0.161 4.161 24 C -0.133 4.133 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.283 0.717 29 H 0.202 0.798 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.337 -14.793 -6.892 18.326 hybrid contribution 0.105 0.749 0.876 1.157 sum -8.232 -14.045 -6.016 17.355 Atomic orbital electron populations 1.70022 1.07529 1.29059 1.47468 1.25835 0.95999 1.03089 0.92635 0.85488 0.78726 0.77185 0.79871 1.18927 1.19234 1.18331 1.20670 0.93107 0.90261 1.56854 0.91405 1.27622 1.10474 1.10247 1.06687 1.05682 0.76272 0.75483 0.73072 1.93502 1.71431 1.86271 1.45675 1.93493 1.71516 1.85794 1.46066 1.54991 1.55484 1.42856 1.27385 1.18895 0.79217 0.86189 0.81194 1.90953 1.62948 1.49106 1.33352 1.19059 1.04208 0.88651 0.93635 1.91527 1.95819 1.64453 1.58870 1.24370 0.90101 1.01545 0.90145 1.21006 0.97711 0.97385 0.95615 1.21537 0.92451 1.00050 1.00014 1.21548 1.01078 0.97811 0.95689 1.21512 0.94492 1.02493 0.96521 1.21533 0.96960 0.98069 0.99534 1.21357 0.99904 0.99327 0.92727 0.91598 0.89780 0.89568 0.71659 0.79835 0.89286 0.88946 0.91938 0.94424 0.90294 0.92090 0.89918 0.94604 0.91042 0.93502 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.76 13.29 21.45 0.28 -51.47 16 2 C 0.03 1.58 5.46 84.66 0.46 2.04 16 3 Si 0.97 42.86 29.54 68.60 2.03 44.89 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 7 C -0.57 -32.34 9.13 25.60 0.23 -32.10 16 8 H 0.07 3.75 7.71 -2.91 -0.02 3.73 16 9 C -0.41 -21.04 5.64 71.24 0.40 -20.64 16 10 S 2.59 114.36 5.03 -56.49 -0.28 114.07 16 11 O -0.98 -45.19 18.08 -127.65 -2.31 -47.50 16 12 O -0.98 -48.95 17.04 -120.74 -2.06 -51.01 16 13 N -1.04 -34.82 5.60 -175.98 -0.99 -35.80 16 14 C 0.56 18.47 7.31 86.63 0.63 19.10 16 15 O -0.49 -19.32 11.18 12.27 0.14 -19.18 16 16 C -0.03 -0.77 7.39 23.50 0.17 -0.60 16 17 F -0.13 -2.82 16.77 44.97 0.75 -2.06 16 18 C -0.04 -0.79 8.77 24.53 0.22 -0.58 16 19 C -0.10 -2.28 1.70 -11.54 -0.02 -2.30 16 20 C -0.10 -1.86 5.19 30.59 0.16 -1.70 16 21 C -0.12 -2.49 5.92 30.59 0.18 -2.30 16 22 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 23 C -0.12 -2.80 5.92 30.59 0.18 -2.62 16 24 C -0.10 -2.07 5.06 30.59 0.15 -1.91 16 25 H 0.27 14.60 8.31 -92.71 -0.77 13.82 16 26 H 0.08 4.46 7.18 -2.39 -0.02 4.44 16 27 H 0.09 4.25 8.14 -2.39 -0.02 4.23 16 28 H 0.44 11.41 8.36 -96.74 -0.81 10.60 16 29 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.09 2.84 4.86 -11.89 -0.06 2.78 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.20 8.07 -2.39 -0.02 1.19 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -72.72 345.22 0.73 -71.99 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.21 Total: 21.57 kcal Atomic # 6 Polarization: -48.45 SS G_CDS: 2.96 Total: -45.49 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -0.70 Total: -87.28 kcal Atomic # 8 Polarization: -113.45 SS G_CDS: -4.23 Total: -117.68 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.75 Total: -2.06 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 114.36 SS G_CDS: -0.28 Total: 114.07 kcal Total: -72.72 0.73 -71.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.730 kcal (2) G-P(sol) polarization free energy of solvation -72.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds