Wall clock time and date at job start Tue Mar 31 2020 13:16:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36897 * 120.00124 * 2 1
4 4 H 1.07990 * 120.00175 * 139.25613 * 3 2 1
5 5 C 1.38829 * 119.99354 * 318.98167 * 3 2 1
6 6 N 1.31551 * 120.00576 * 350.76436 * 5 3 2
7 7 Si 1.86805 * 119.99849 * 170.76592 * 5 3 2
8 8 H 1.48496 * 109.46860 * 59.99751 * 7 5 3
9 9 H 1.48496 * 109.47263 * 179.97438 * 7 5 3
10 10 H 1.48504 * 109.47000 * 300.00156 * 7 5 3
11 11 C 1.38615 * 120.00326 * 180.02562 * 2 1 3
12 12 N 1.32977 * 120.55323 * 353.60225 * 11 2 1
13 13 C 1.31865 * 120.72843 * 179.71672 * 12 11 2
14 14 Cl 1.73605 * 119.03169 * 180.29276 * 13 12 11
15 15 N 1.31899 * 121.93569 * 0.57908 * 13 12 11
16 16 C 1.32537 * 121.05002 * 359.71078 * 15 13 12
17 17 C 1.38619 * 119.14549 * 0.02562 * 16 15 13
18 18 O 1.35986 * 120.87547 * 179.97438 * 17 16 15
19 19 C 1.42906 * 116.99801 * 0.02562 * 18 17 16
20 20 C 1.50699 * 109.46937 * 179.97438 * 19 18 17
21 21 C 1.38235 * 119.99877 * 269.72160 * 20 19 18
22 22 C 1.38235 * 119.99748 * 179.76519 * 21 20 19
23 23 C 1.38243 * 120.00236 * 0.51110 * 22 21 20
24 24 C 1.38235 * 119.99558 * 359.74419 * 23 22 21
25 25 C 1.38237 * 120.00317 * 0.02562 * 24 23 22
26 26 H 1.09001 * 109.47257 * 87.08021 * 1 2 3
27 27 H 1.09001 * 109.46830 * 207.07443 * 1 2 3
28 28 H 1.08999 * 109.47547 * 327.07438 * 1 2 3
29 29 H 0.97003 * 120.00563 * 180.02562 * 6 5 3
30 30 H 1.08000 * 120.42158 * 179.97438 * 16 15 13
31 31 H 1.08998 * 109.46880 * 299.99552 * 19 18 17
32 32 H 1.08994 * 109.46979 * 59.99709 * 19 18 17
33 33 H 1.07992 * 119.99790 * 0.02562 * 21 20 19
34 34 H 1.07999 * 120.00155 * 180.23329 * 22 21 20
35 35 H 1.07998 * 120.00226 * 179.72048 * 23 22 21
36 36 H 1.08004 * 119.99583 * 179.97438 * 24 23 22
37 37 H 1.07994 * 119.99816 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1495 1.1855 0.0000
4 1 3.0331 1.2989 0.6104
5 6 1.7108 2.2402 -0.7891
6 7 0.7527 2.0486 -1.6699
7 14 2.4813 3.9314 -0.6002
8 1 3.9355 3.8478 -0.8889
9 1 1.8418 4.8757 -1.5512
10 1 2.2795 4.4149 0.7893
11 6 2.1581 -1.2004 -0.0005
12 7 1.5106 -2.3549 0.1265
13 6 2.1660 -3.4992 0.1209
14 17 1.2757 -4.9808 0.2822
15 7 3.4786 -3.5508 0.0019
16 6 4.1977 -2.4446 -0.1236
17 6 3.5532 -1.2174 -0.1286
18 8 4.2564 -0.0603 -0.2548
19 6 5.6754 -0.1741 -0.3810
20 6 6.2799 1.2003 -0.5101
21 6 6.4516 1.7652 -1.7600
22 6 7.0017 3.0279 -1.8781
23 6 7.3899 3.7213 -0.7469
24 6 7.2230 3.1542 0.5026
25 6 6.6686 1.8934 0.6211
26 1 -0.3634 0.0523 -1.0263
27 1 -0.3633 -0.9151 0.4678
28 1 -0.3634 0.8626 0.5586
29 1 0.4465 2.7854 -2.2216
30 1 5.2720 -2.4987 -0.2200
31 1 6.0802 -0.6680 0.5023
32 1 5.9154 -0.7610 -1.2675
33 1 6.1521 1.2218 -2.6439
34 1 7.1324 3.4709 -2.8543
35 1 7.8238 4.7060 -0.8395
36 1 7.5267 3.6958 1.3864
37 1 6.5386 1.4502 1.5973
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166799621.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:16:10
Heat of formation + Delta-G solvation = 50.636573 kcal
Electronic energy + Delta-G solvation = -24354.101052 eV
Core-core repulsion = 20737.568253 eV
Total energy + Delta-G solvation = -3616.532800 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 319.083 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.24393 -39.11895 -37.42650 -36.49174 -35.91850 -32.75374 -32.04681 -31.24208
-30.77364 -29.13979 -26.92229 -25.99269 -24.72526 -22.67278 -22.46022 -21.85051
-20.91880 -18.22292 -17.42605 -17.00411 -16.59079 -16.23866 -15.66146 -15.10179
-15.04539 -14.60017 -14.09416 -13.74211 -13.65714 -13.49174 -13.25335 -13.04561
-12.97748 -12.66143 -12.05317 -11.56044 -11.36822 -11.22426 -11.06432 -10.97370
-10.93980 -10.81719 -10.64785 -10.50822 -10.36720 -10.30464 -10.06679 -9.16810
-8.77436 -8.73224 -8.32098 -8.20153 -6.88017 -6.45089 -4.13534 1.39086
1.54594 1.88867 2.19247 2.23711 3.10653 3.12553 3.17617 3.66127
3.91779 4.25922 4.51311 4.56097 4.90113 4.93722 4.99711 5.07888
5.14586 5.22251 5.39815 5.46848 5.59636 5.68083 5.76374 5.83005
6.08293 6.16431 6.17387 6.48887 6.55755 6.60549 6.72788 6.74611
6.89520 7.10689 7.11038 7.34604 7.65771 7.79542 8.14648 8.46132
8.91545 8.98132 9.47093 10.45464
Molecular weight = 319.08amu
Principal moments of inertia in cm(-1)
A = 0.013312 B = 0.005148 C = 0.003921
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2102.854571 B = 5437.224543 C = 7139.489977
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.108 3.892
2 N -0.383 5.383
3 C -0.298 4.298
4 H 0.109 0.891
5 C 0.048 3.952
6 N -0.857 5.857
7 Si 0.920 3.080
8 H -0.259 1.259
9 H -0.283 1.283
10 H -0.271 1.271
11 C 0.391 3.609
12 N -0.576 5.576
13 C 0.382 3.618
14 Cl -0.019 7.019
15 N -0.569 5.569
16 C 0.066 3.934
17 C -0.029 4.029
18 O -0.257 6.257
19 C 0.084 3.916
20 C -0.077 4.077
21 C -0.092 4.092
22 C -0.124 4.124
23 C -0.119 4.119
24 C -0.126 4.126
25 C -0.097 4.097
26 H 0.065 0.935
27 H 0.054 0.946
28 H 0.055 0.945
29 H 0.273 0.727
30 H 0.154 0.846
31 H 0.061 0.939
32 H 0.062 0.938
33 H 0.123 0.877
34 H 0.120 0.880
35 H 0.118 0.882
36 H 0.121 0.879
37 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.371 0.886 1.624 9.552
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.035 4.035
2 N -0.073 5.073
3 C -0.427 4.427
4 H 0.127 0.873
5 C -0.161 4.161
6 N -0.491 5.491
7 Si 0.745 3.255
8 H -0.184 1.184
9 H -0.209 1.209
10 H -0.196 1.196
11 C 0.143 3.857
12 N -0.312 5.312
13 C 0.085 3.915
14 Cl 0.009 6.991
15 N -0.299 5.299
16 C -0.088 4.088
17 C -0.087 4.087
18 O -0.168 6.168
19 C 0.008 3.992
20 C -0.078 4.078
21 C -0.110 4.110
22 C -0.142 4.142
23 C -0.137 4.137
24 C -0.144 4.144
25 C -0.116 4.116
26 H 0.084 0.916
27 H 0.073 0.927
28 H 0.074 0.926
29 H 0.084 0.916
30 H 0.171 0.829
31 H 0.079 0.921
32 H 0.080 0.920
33 H 0.141 0.859
34 H 0.138 0.862
35 H 0.137 0.863
36 H 0.139 0.861
37 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 8.511 0.614 1.556 8.674
hybrid contribution 0.748 1.332 -0.190 1.540
sum 9.259 1.947 1.367 9.560
Atomic orbital electron populations
1.21585 0.79837 0.99815 1.02261 1.42523 1.05101 1.00721 1.59002
1.19769 1.11278 0.86517 1.25137 0.87335 1.25601 0.96246 1.00758
0.93456 1.69979 1.26814 1.33050 1.19252 0.86054 0.80399 0.80593
0.78416 1.18364 1.20852 1.19630 1.18391 0.85490 0.86360 0.95502
1.67219 1.39602 0.96044 1.28356 1.21954 0.86199 0.86543 0.96847
1.98335 1.74285 1.30562 1.95952 1.67482 1.05798 1.31560 1.25063
1.22404 0.99150 0.86083 1.01114 1.19913 0.92011 0.87340 1.09391
1.86899 1.16073 1.25641 1.88140 1.21560 0.82829 0.93882 1.00943
1.19498 0.98893 0.95797 0.93572 1.21074 0.97407 0.95402 0.97166
1.21104 0.99562 0.94943 0.98602 1.21134 1.00130 0.99574 0.92846
1.21090 1.00300 0.95587 0.97450 1.21055 0.97690 0.94690 0.98115
0.91630 0.92701 0.92587 0.91649 0.82873 0.92103 0.92017 0.85906
0.86168 0.86347 0.86139 0.85935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.49 9.09 59.84 0.54 3.03 16
2 N -0.38 -9.50 3.01 -122.10 -0.37 -9.87 16
3 C -0.30 -7.45 7.57 -15.07 -0.11 -7.57 16
4 H 0.11 2.73 6.20 -52.49 -0.33 2.40 16
5 C 0.05 1.19 5.26 -17.45 -0.09 1.10 16
6 N -0.86 -22.06 11.62 55.49 0.64 -21.42 16
7 Si 0.92 19.50 29.56 -169.99 -5.03 14.47 16
8 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16
9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16
10 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
11 C 0.39 9.38 7.37 -154.54 -1.14 8.24 16
12 N -0.58 -13.36 9.15 -10.74 -0.10 -13.46 16
13 C 0.38 8.20 8.17 -92.00 -0.75 7.45 16
14 Cl -0.02 -0.34 29.26 -51.86 -1.52 -1.85 16
15 N -0.57 -11.92 10.39 -11.60 -0.12 -12.04 16
16 C 0.07 1.29 10.30 -17.11 -0.18 1.12 16
17 C -0.03 -0.64 6.64 -38.74 -0.26 -0.89 16
18 O -0.26 -5.30 6.48 -19.70 -0.13 -5.43 16
19 C 0.08 1.32 4.89 36.00 0.18 1.49 16
20 C -0.08 -1.20 5.51 -104.62 -0.58 -1.78 16
21 C -0.09 -1.38 9.70 -39.58 -0.38 -1.77 16
22 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16
23 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16
24 C -0.13 -1.64 10.05 -39.58 -0.40 -2.03 16
25 C -0.10 -1.39 9.70 -39.58 -0.38 -1.77 16
26 H 0.07 1.60 7.28 -51.93 -0.38 1.22 16
27 H 0.05 1.19 7.23 -51.93 -0.38 0.81 16
28 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16
29 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16
30 H 0.15 2.43 6.46 -52.49 -0.34 2.09 16
31 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16
32 H 0.06 0.89 7.65 -51.93 -0.40 0.49 16
33 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16
34 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16
35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16
36 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16
37 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16
LS Contribution 334.28 15.07 5.04 5.04
Total: -1.00 -28.46 334.28 -9.80 -38.26
By element:
Atomic # 1 Polarization: 7.55 SS G_CDS: -3.88 Total: 3.67 kcal
Atomic # 6 Polarization: 6.98 SS G_CDS: -4.35 Total: 2.63 kcal
Atomic # 7 Polarization: -56.85 SS G_CDS: 0.06 Total: -56.79 kcal
Atomic # 8 Polarization: -5.30 SS G_CDS: -0.13 Total: -5.43 kcal
Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal
Atomic # 17 Polarization: -0.34 SS G_CDS: -1.52 Total: -1.85 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -28.46 -9.80 -38.26 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166799621.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.900 kcal
(2) G-P(sol) polarization free energy of solvation -28.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds