Wall clock time and date at job start Tue Mar 31 2020 13:16:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.36897 * 120.00124 * 2 1
4 4 H 1.07990 * 120.00175 * 139.25613 * 3 2 1
5 5 C 1.38829 * 119.99354 * 318.98167 * 3 2 1
6 6 N 1.31551 * 120.00576 * 350.76436 * 5 3 2
7 7 Si 1.86805 * 119.99849 * 170.76592 * 5 3 2
8 8 H 1.48496 * 109.46860 * 59.99751 * 7 5 3
9 9 H 1.48496 * 109.47263 * 179.97438 * 7 5 3
10 10 H 1.48504 * 109.47000 * 300.00156 * 7 5 3
11 11 C 1.38615 * 120.00326 * 180.02562 * 2 1 3
12 12 N 1.32977 * 120.55323 * 353.60225 * 11 2 1
13 13 C 1.31865 * 120.72843 * 179.71672 * 12 11 2
14 14 Cl 1.73605 * 119.03169 * 180.29276 * 13 12 11
15 15 N 1.31899 * 121.93569 * 0.57908 * 13 12 11
16 16 C 1.32537 * 121.05002 * 359.71078 * 15 13 12
17 17 C 1.38619 * 119.14549 * 0.02562 * 16 15 13
18 18 O 1.35986 * 120.87547 * 179.97438 * 17 16 15
19 19 C 1.42906 * 116.99801 * 0.02562 * 18 17 16
20 20 C 1.50699 * 109.46937 * 179.97438 * 19 18 17
21 21 C 1.38235 * 119.99877 * 269.72160 * 20 19 18
22 22 C 1.38235 * 119.99748 * 179.76519 * 21 20 19
23 23 C 1.38243 * 120.00236 * 0.51110 * 22 21 20
24 24 C 1.38235 * 119.99558 * 359.74419 * 23 22 21
25 25 C 1.38237 * 120.00317 * 0.02562 * 24 23 22
26 26 H 1.09001 * 109.47257 * 87.08021 * 1 2 3
27 27 H 1.09001 * 109.46830 * 207.07443 * 1 2 3
28 28 H 1.08999 * 109.47547 * 327.07438 * 1 2 3
29 29 H 0.97003 * 120.00563 * 180.02562 * 6 5 3
30 30 H 1.08000 * 120.42158 * 179.97438 * 16 15 13
31 31 H 1.08998 * 109.46880 * 299.99552 * 19 18 17
32 32 H 1.08994 * 109.46979 * 59.99709 * 19 18 17
33 33 H 1.07992 * 119.99790 * 0.02562 * 21 20 19
34 34 H 1.07999 * 120.00155 * 180.23329 * 22 21 20
35 35 H 1.07998 * 120.00226 * 179.72048 * 23 22 21
36 36 H 1.08004 * 119.99583 * 179.97438 * 24 23 22
37 37 H 1.07994 * 119.99816 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1495 1.1855 0.0000
4 1 3.0331 1.2989 0.6104
5 6 1.7108 2.2402 -0.7891
6 7 0.7527 2.0486 -1.6699
7 14 2.4813 3.9314 -0.6002
8 1 3.9355 3.8478 -0.8889
9 1 1.8418 4.8757 -1.5512
10 1 2.2795 4.4149 0.7893
11 6 2.1581 -1.2004 -0.0005
12 7 1.5106 -2.3549 0.1265
13 6 2.1660 -3.4992 0.1209
14 17 1.2757 -4.9808 0.2822
15 7 3.4786 -3.5508 0.0019
16 6 4.1977 -2.4446 -0.1236
17 6 3.5532 -1.2174 -0.1286
18 8 4.2564 -0.0603 -0.2548
19 6 5.6754 -0.1741 -0.3810
20 6 6.2799 1.2003 -0.5101
21 6 6.4516 1.7652 -1.7600
22 6 7.0017 3.0279 -1.8781
23 6 7.3899 3.7213 -0.7469
24 6 7.2230 3.1542 0.5026
25 6 6.6686 1.8934 0.6211
26 1 -0.3634 0.0523 -1.0263
27 1 -0.3633 -0.9151 0.4678
28 1 -0.3634 0.8626 0.5586
29 1 0.4465 2.7854 -2.2216
30 1 5.2720 -2.4987 -0.2200
31 1 6.0802 -0.6680 0.5023
32 1 5.9154 -0.7610 -1.2675
33 1 6.1521 1.2218 -2.6439
34 1 7.1324 3.4709 -2.8543
35 1 7.8238 4.7060 -0.8395
36 1 7.5267 3.6958 1.3864
37 1 6.5386 1.4502 1.5973
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001166799621.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:16:10
Heat of formation + Delta-G solvation = 37.339943 kcal
Electronic energy + Delta-G solvation = -24354.677638 eV
Core-core repulsion = 20737.568253 eV
Total energy + Delta-G solvation = -3617.109385 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 319.083 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.89924 -40.25229 -38.89267 -38.20981 -37.50457 -34.53427 -33.31227 -32.90019
-31.78808 -30.76667 -28.63791 -27.33733 -26.48656 -24.29029 -23.49893 -23.48190
-22.13795 -19.94675 -18.98911 -18.59077 -18.10484 -17.55584 -17.09651 -16.76060
-16.15491 -16.08153 -15.76740 -15.34147 -15.06320 -14.98208 -14.81494 -14.37578
-14.26076 -13.80297 -13.49282 -13.19195 -12.93255 -12.86409 -12.73162 -12.41856
-12.33329 -12.27552 -12.14542 -12.07506 -11.88910 -11.72459 -11.70776 -10.97093
-10.06279 -10.00241 -9.80773 -9.68974 -8.64944 -8.24405 -6.01509 0.21829
0.31959 0.46062 0.51276 0.63039 1.40211 1.45654 1.50406 2.19373
2.38968 2.75752 2.81676 3.06193 3.17598 3.50822 3.80303 3.89853
3.91804 4.13496 4.19283 4.26326 4.31760 4.34351 4.52098 4.66372
4.69249 4.75707 4.89383 5.07213 5.15440 5.21213 5.26471 5.48243
5.54424 5.59729 5.67549 5.97929 6.01872 6.10763 6.49103 6.70751
7.15499 7.18569 7.66972 8.64141
Molecular weight = 319.08amu
Principal moments of inertia in cm(-1)
A = 0.013312 B = 0.005148 C = 0.003921
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2102.854571 B = 5437.224543 C = 7139.489977
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.124 3.876
2 N -0.410 5.410
3 C -0.304 4.304
4 H 0.104 0.896
5 C 0.009 3.991
6 N -0.892 5.892
7 Si 0.977 3.023
8 H -0.259 1.259
9 H -0.283 1.283
10 H -0.266 1.266
11 C 0.374 3.626
12 N -0.589 5.589
13 C 0.364 3.636
14 Cl 0.011 6.989
15 N -0.564 5.564
16 C 0.079 3.921
17 C -0.037 4.037
18 O -0.278 6.278
19 C 0.080 3.920
20 C -0.099 4.099
21 C -0.113 4.113
22 C -0.134 4.134
23 C -0.121 4.121
24 C -0.131 4.131
25 C -0.110 4.110
26 H 0.044 0.956
27 H 0.062 0.938
28 H 0.052 0.948
29 H 0.272 0.728
30 H 0.194 0.806
31 H 0.082 0.918
32 H 0.074 0.926
33 H 0.121 0.879
34 H 0.140 0.860
35 H 0.148 0.852
36 H 0.147 0.853
37 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.434 1.096 2.163 11.688
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.019 4.019
2 N -0.102 5.102
3 C -0.433 4.433
4 H 0.121 0.879
5 C -0.195 4.195
6 N -0.528 5.528
7 Si 0.800 3.200
8 H -0.183 1.183
9 H -0.208 1.208
10 H -0.191 1.191
11 C 0.126 3.874
12 N -0.324 5.324
13 C 0.068 3.932
14 Cl 0.038 6.962
15 N -0.293 5.293
16 C -0.076 4.076
17 C -0.094 4.094
18 O -0.189 6.189
19 C 0.005 3.995
20 C -0.099 4.099
21 C -0.131 4.131
22 C -0.152 4.152
23 C -0.139 4.139
24 C -0.149 4.149
25 C -0.128 4.128
26 H 0.063 0.937
27 H 0.080 0.920
28 H 0.071 0.929
29 H 0.082 0.918
30 H 0.211 0.789
31 H 0.100 0.900
32 H 0.092 0.908
33 H 0.139 0.861
34 H 0.158 0.842
35 H 0.166 0.834
36 H 0.165 0.835
37 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 10.588 0.782 2.108 10.824
hybrid contribution 0.241 1.067 -0.339 1.145
sum 10.829 1.849 1.769 11.127
Atomic orbital electron populations
1.21359 0.79772 0.99917 1.00854 1.42610 1.05321 1.01021 1.61284
1.19797 1.11329 0.87021 1.25118 0.87915 1.26281 0.96635 1.03535
0.93096 1.70081 1.28425 1.33744 1.20536 0.85201 0.79413 0.76989
0.78389 1.18302 1.20799 1.19076 1.18768 0.86882 0.86483 0.95243
1.67231 1.40369 0.96471 1.28362 1.22385 0.86781 0.87250 0.96794
1.98340 1.73715 1.28361 1.95753 1.67630 1.05625 1.32013 1.24046
1.23018 1.00770 0.84886 0.98926 1.19995 0.91561 0.88525 1.09349
1.86827 1.18643 1.25446 1.88030 1.21823 0.80229 0.95019 1.02444
1.19599 0.99999 0.96055 0.94294 1.21259 0.98332 0.96401 0.97145
1.21438 0.99153 0.94517 1.00110 1.21557 0.99235 1.00672 0.92427
1.21478 0.99452 0.95196 0.98735 1.21304 0.97884 0.95424 0.98216
0.93743 0.91964 0.92913 0.91822 0.78915 0.89963 0.90786 0.86080
0.84210 0.83432 0.83487 0.84987
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 5.90 9.09 127.77 1.16 7.07 16
2 N -0.41 -20.72 3.01 -540.22 -1.63 -22.35 16
3 C -0.30 -15.46 7.57 84.04 0.64 -14.82 16
4 H 0.10 5.23 6.20 -2.92 -0.02 5.21 16
5 C 0.01 0.45 5.26 84.88 0.45 0.90 16
6 N -0.89 -47.15 11.62 21.65 0.25 -46.90 16
7 Si 0.98 40.20 29.56 68.60 2.03 42.23 16
8 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16
9 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16
10 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16
11 C 0.37 18.00 7.37 133.26 0.98 18.99 16
12 N -0.59 -27.18 9.15 -187.89 -1.72 -28.90 16
13 C 0.36 15.22 8.17 180.83 1.48 16.69 16
14 Cl 0.01 0.37 29.26 -2.72 -0.08 0.29 16
15 N -0.56 -22.49 10.39 -190.61 -1.98 -24.48 16
16 C 0.08 2.91 10.30 84.68 0.87 3.78 16
17 C -0.04 -1.60 6.64 22.81 0.15 -1.44 16
18 O -0.28 -11.32 6.48 -93.40 -0.61 -11.92 16
19 C 0.08 2.39 4.89 71.24 0.35 2.74 16
20 C -0.10 -2.96 5.51 -19.87 -0.11 -3.07 16
21 C -0.11 -3.28 9.70 22.27 0.22 -3.07 16
22 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16
23 C -0.12 -2.74 10.05 22.27 0.22 -2.52 16
24 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16
25 C -0.11 -2.95 9.70 22.27 0.22 -2.73 16
26 H 0.04 2.26 7.28 -2.39 -0.02 2.24 16
27 H 0.06 2.77 7.23 -2.39 -0.02 2.75 16
28 H 0.05 2.45 8.05 -2.39 -0.02 2.43 16
29 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16
30 H 0.19 5.44 6.46 -2.91 -0.02 5.42 16
31 H 0.08 2.07 7.65 -2.39 -0.02 2.05 16
32 H 0.07 1.99 7.65 -2.39 -0.02 1.98 16
33 H 0.12 3.39 8.06 -2.91 -0.02 3.36 16
34 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16
35 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16
36 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16
37 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16
Total: -1.00 -61.17 334.28 4.44 -56.72
By element:
Atomic # 1 Polarization: 17.64 SS G_CDS: 1.11 Total: 18.74 kcal
Atomic # 6 Polarization: 9.49 SS G_CDS: 7.07 Total: 16.56 kcal
Atomic # 7 Polarization: -117.54 SS G_CDS: -5.08 Total: -122.62 kcal
Atomic # 8 Polarization: -11.32 SS G_CDS: -0.61 Total: -11.92 kcal
Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal
Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal
Total: -61.17 4.44 -56.72 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166799621.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.062 kcal
(2) G-P(sol) polarization free energy of solvation -61.166 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.896 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds