Wall clock time and date at job start Tue Mar 31 2020 12:00:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38289 * 119.97110 * 2 1
4 4 C 1.38253 * 120.11344 * 179.97438 * 3 2 1
5 5 C 1.38161 * 120.05713 * 0.02562 * 4 3 2
6 6 C 1.38733 * 119.93995 * 0.25235 * 5 4 3
7 7 O 1.35894 * 120.05227 * 179.74303 * 6 5 4
8 8 C 1.35546 * 118.00488 * 256.42443 * 7 6 5
9 9 N 1.32691 * 120.55294 * 2.93334 * 8 7 6
10 10 C 1.31953 * 120.79848 * 179.71151 * 9 8 7
11 11 Cl 1.73601 * 119.00262 * 180.28401 * 10 9 8
12 12 N 1.31908 * 121.98794 * 0.57214 * 10 9 8
13 13 C 1.32425 * 121.03623 * 359.71552 * 12 10 9
14 14 C 1.39052 * 119.07944 * 359.97438 * 13 12 10
15 15 N 1.39453 * 120.89560 * 179.97438 * 14 13 12
16 16 C 1.46501 * 120.00078 * 90.02327 * 15 14 13
17 17 C 1.36794 * 120.00328 * 270.02334 * 15 14 13
18 18 H 1.07998 * 120.00027 * 23.27007 * 17 15 14
19 19 C 1.38762 * 120.00387 * 203.27554 * 17 15 14
20 20 N 1.31625 * 120.00039 * 13.57288 * 19 17 15
21 21 Si 1.86800 * 120.00404 * 193.57765 * 19 17 15
22 22 H 1.48500 * 109.47222 * 89.99637 * 21 19 17
23 23 H 1.48495 * 109.47414 * 209.99903 * 21 19 17
24 24 H 1.48501 * 109.46638 * 329.99749 * 21 19 17
25 25 C 1.38116 * 119.96775 * 179.97438 * 2 1 3
26 26 H 1.08999 * 109.47025 * 89.99470 * 1 2 3
27 27 H 1.08990 * 109.47366 * 209.99989 * 1 2 3
28 28 H 1.09002 * 109.46769 * 329.99939 * 1 2 3
29 29 H 1.07997 * 119.94780 * 359.97438 * 3 2 1
30 30 H 1.08000 * 119.96970 * 179.97438 * 4 3 2
31 31 H 1.07996 * 120.02821 * 179.97438 * 5 4 3
32 32 H 1.08004 * 120.45799 * 179.97438 * 13 12 10
33 33 H 1.09008 * 109.46882 * 95.03663 * 16 15 14
34 34 H 1.08995 * 109.47637 * 215.03540 * 16 15 14
35 35 H 1.09002 * 109.47185 * 335.04250 * 16 15 14
36 36 H 0.96996 * 119.99903 * 179.97438 * 20 19 17
37 37 H 1.08005 * 120.03213 * 0.04369 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1979 1.1980 0.0000
4 6 3.5804 1.2014 0.0005
5 6 4.2754 0.0073 0.0005
6 6 3.5847 -1.1958 -0.0053
7 8 4.2659 -2.3717 -0.0106
8 6 4.3423 -3.0577 -1.1771
9 7 3.8157 -2.5594 -2.2884
10 6 3.8922 -3.2206 -3.4278
11 17 3.1935 -2.5216 -4.8551
12 7 4.4785 -4.3990 -3.5139
13 6 5.0244 -4.9693 -2.4507
14 6 4.9745 -4.3079 -1.2285
15 7 5.5366 -4.8737 -0.0846
16 6 6.9359 -4.6031 0.2546
17 6 4.7816 -5.6815 0.7208
18 1 3.9144 -6.1852 0.3199
19 6 5.1296 -5.8536 2.0530
20 7 6.0089 -5.0498 2.6126
21 14 4.3505 -7.2262 3.0521
22 1 5.1772 -8.4543 2.9352
23 1 4.2707 -6.8171 4.4774
24 1 2.9842 -7.4984 2.5380
25 6 2.1970 -1.1965 0.0005
26 1 -0.3633 0.0001 -1.0277
27 1 -0.3633 -0.8899 0.5138
28 1 -0.3633 0.8900 0.5139
29 1 1.6566 2.1325 -0.0004
30 1 4.1176 2.1383 0.0001
31 1 5.3553 0.0105 0.0005
32 1 5.5018 -5.9347 -2.5317
33 1 6.9850 -3.7721 0.9583
34 1 7.3779 -5.4901 0.7085
35 1 7.4859 -4.3457 -0.6505
36 1 6.2519 -5.1700 3.5439
37 1 1.6569 -2.1319 0.0002
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166802031.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:25
Heat of formation + Delta-G solvation = 69.852768 kcal
Electronic energy + Delta-G solvation = -24223.125633 eV
Core-core repulsion = 20607.426110 eV
Total energy + Delta-G solvation = -3615.699523 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 319.083 amu
Computer time = 1.39 seconds
Orbital eigenvalues (eV)
-40.97108 -39.56923 -37.68291 -36.63668 -35.85440 -33.01303 -32.49730 -31.88949
-30.13485 -29.00708 -26.89297 -26.13020 -24.54583 -24.28866 -22.24278 -21.63177
-21.24091 -18.64362 -17.79578 -17.26285 -16.38202 -16.06236 -15.67813 -15.53592
-14.85632 -14.66781 -14.14836 -13.90350 -13.57124 -13.33244 -13.29239 -13.04692
-13.02650 -12.28450 -12.11149 -11.80428 -11.66469 -11.41457 -11.36483 -11.19902
-11.11277 -10.90620 -10.89607 -10.63670 -10.28326 -10.12712 -9.85648 -9.31632
-8.76097 -8.68105 -8.49248 -8.19500 -7.14684 -5.98787 -3.50842 1.24281
1.27685 1.48247 1.53877 1.73534 3.22627 3.27921 3.33529 3.34855
3.99408 4.05968 4.28032 4.41138 4.86119 4.90399 4.94964 5.12450
5.19580 5.21803 5.30247 5.43786 5.47981 5.60046 5.67672 5.79461
5.88515 6.09209 6.15793 6.46567 6.47294 6.56128 6.58985 6.63751
6.94350 7.09691 7.15080 7.51567 7.59712 7.80775 8.16762 8.28404
8.92506 9.57649 9.97401 11.04889
Molecular weight = 319.08amu
Principal moments of inertia in cm(-1)
A = 0.009966 B = 0.005571 C = 0.004197
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2808.819446 B = 5025.005221 C = 6670.081612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.076 4.076
3 C -0.125 4.125
4 C -0.105 4.105
5 C -0.122 4.122
6 C 0.104 3.896
7 O -0.209 6.209
8 C 0.347 3.653
9 N -0.558 5.558
10 C 0.367 3.633
11 Cl 0.002 6.998
12 N -0.521 5.521
13 C 0.150 3.850
14 C 0.112 3.888
15 N -0.538 5.538
16 C 0.161 3.839
17 C -0.271 4.271
18 H 0.073 0.927
19 C 0.019 3.981
20 N -0.888 5.888
21 Si 0.912 3.088
22 H -0.282 1.282
23 H -0.288 1.288
24 H -0.277 1.277
25 C -0.115 4.115
26 H 0.070 0.930
27 H 0.066 0.934
28 H 0.066 0.934
29 H 0.122 0.878
30 H 0.126 0.874
31 H 0.127 0.873
32 H 0.181 0.819
33 H 0.043 0.957
34 H 0.053 0.947
35 H 0.004 0.996
36 H 0.258 0.742
37 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.200 9.194 -7.254 12.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.076 4.076
3 C -0.143 4.143
4 C -0.123 4.123
5 C -0.140 4.140
6 C 0.062 3.938
7 O -0.110 6.110
8 C 0.158 3.842
9 N -0.291 5.291
10 C 0.073 3.927
11 Cl 0.030 6.970
12 N -0.243 5.243
13 C -0.013 4.013
14 C 0.009 3.991
15 N -0.256 5.256
16 C 0.018 3.982
17 C -0.399 4.399
18 H 0.091 0.909
19 C -0.182 4.182
20 N -0.529 5.529
21 Si 0.741 3.259
22 H -0.209 1.209
23 H -0.214 1.214
24 H -0.202 1.202
25 C -0.133 4.133
26 H 0.089 0.911
27 H 0.085 0.915
28 H 0.085 0.915
29 H 0.140 0.860
30 H 0.144 0.856
31 H 0.145 0.855
32 H 0.198 0.802
33 H 0.062 0.938
34 H 0.072 0.928
35 H 0.022 0.978
36 H 0.069 0.931
37 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges -5.417 9.551 -7.600 13.354
hybrid contribution -0.239 -0.743 1.235 1.461
sum -5.655 8.808 -6.365 12.251
Atomic orbital electron populations
1.20774 0.91007 1.02711 1.02361 1.19704 0.96052 0.92442 0.99448
1.20996 0.94192 0.97326 1.01826 1.20912 0.94124 0.97226 1.00079
1.21167 1.00545 0.91230 1.01091 1.18697 0.90315 0.84626 1.00195
1.84950 1.68040 1.31268 1.26756 1.22250 0.89926 0.89065 0.82975
1.67216 1.24613 1.38631 0.98677 1.22153 0.95230 0.88339 0.87026
1.98380 1.81694 1.82894 1.34051 1.67733 1.12739 1.10290 1.33505
1.23729 0.93016 0.98643 0.85880 1.18853 0.98318 0.89736 0.92197
1.41335 1.08589 1.52959 1.22672 1.20996 0.80942 1.01244 0.95049
1.19145 1.11216 1.18847 0.90658 0.90874 1.25112 0.98618 0.98374
0.96105 1.70085 1.34383 1.36033 1.12433 0.86145 0.79137 0.81338
0.79268 1.20886 1.21381 1.20198 1.21196 0.93127 0.98475 1.00519
0.91092 0.91498 0.91543 0.86001 0.85592 0.85490 0.80238 0.93814
0.92831 0.97764 0.93138 0.85840
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 38.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16
2 C -0.08 -1.06 5.88 -104.65 -0.62 -1.68 16
3 C -0.13 -1.58 9.70 -39.56 -0.38 -1.97 16
4 C -0.11 -1.40 10.04 -39.60 -0.40 -1.79 16
5 C -0.12 -1.99 9.99 -39.43 -0.39 -2.38 16
6 C 0.10 1.97 5.12 -39.20 -0.20 1.77 16
7 O -0.21 -4.66 9.78 -2.51 -0.02 -4.68 16
8 C 0.35 7.42 7.46 -16.45 -0.12 7.30 16
9 N -0.56 -11.02 9.31 -11.50 -0.11 -11.13 16
10 C 0.37 6.77 8.17 -91.92 -0.75 6.02 16
11 Cl 0.00 0.03 29.26 -51.86 -1.52 -1.48 16
12 N -0.52 -9.62 10.39 -11.49 -0.12 -9.74 16
13 C 0.15 2.81 11.25 -16.99 -0.19 2.62 16
14 C 0.11 2.41 5.10 -83.36 -0.42 1.99 16
15 N -0.54 -12.94 2.79 -120.15 -0.33 -13.28 16
16 C 0.16 3.73 8.97 59.85 0.54 4.26 16
17 C -0.27 -7.06 9.62 -15.14 -0.15 -7.21 16
18 H 0.07 1.89 7.86 -52.49 -0.41 1.48 16
19 C 0.02 0.51 5.08 -17.45 -0.09 0.42 16
20 N -0.89 -24.35 10.75 55.49 0.60 -23.75 16
21 Si 0.91 20.77 29.57 -169.99 -5.03 15.75 16
22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
25 C -0.11 -1.96 9.40 -39.43 -0.37 -2.33 16
26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16
28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16
29 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16
30 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16
31 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16
32 H 0.18 2.94 8.06 -52.48 -0.42 2.52 16
33 H 0.04 1.11 7.33 -51.92 -0.38 0.73 16
34 H 0.05 1.29 7.37 -51.93 -0.38 0.91 16
35 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16
36 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16
37 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16
LS Contribution 342.47 15.07 5.16 5.16
Total: -1.00 -28.86 342.47 -8.67 -37.53
By element:
Atomic # 1 Polarization: 3.54 SS G_CDS: -4.10 Total: -0.56 kcal
Atomic # 6 Polarization: 9.38 SS G_CDS: -3.19 Total: 6.19 kcal
Atomic # 7 Polarization: -57.93 SS G_CDS: 0.04 Total: -57.90 kcal
Atomic # 8 Polarization: -4.66 SS G_CDS: -0.02 Total: -4.68 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.75 kcal
Atomic # 17 Polarization: 0.03 SS G_CDS: -1.52 Total: -1.48 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -28.86 -8.67 -37.53 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166802031.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.380 kcal
(2) G-P(sol) polarization free energy of solvation -28.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.518 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal
(6) G-S(sol) free energy of system = (1) + (5) 69.853 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.39 seconds