Wall clock time and date at job start Tue Mar 31 2020 12:00:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.38289 * 119.97110 * 2 1
4 4 C 1.38253 * 120.11344 * 179.97438 * 3 2 1
5 5 C 1.38161 * 120.05713 * 0.02562 * 4 3 2
6 6 C 1.38733 * 119.93995 * 0.25235 * 5 4 3
7 7 O 1.35894 * 120.05227 * 179.74303 * 6 5 4
8 8 C 1.35546 * 118.00488 * 256.42443 * 7 6 5
9 9 N 1.32691 * 120.55294 * 2.93334 * 8 7 6
10 10 C 1.31953 * 120.79848 * 179.71151 * 9 8 7
11 11 Cl 1.73601 * 119.00262 * 180.28401 * 10 9 8
12 12 N 1.31908 * 121.98794 * 0.57214 * 10 9 8
13 13 C 1.32425 * 121.03623 * 359.71552 * 12 10 9
14 14 C 1.39052 * 119.07944 * 359.97438 * 13 12 10
15 15 N 1.39453 * 120.89560 * 179.97438 * 14 13 12
16 16 C 1.46501 * 120.00078 * 90.02327 * 15 14 13
17 17 C 1.36794 * 120.00328 * 270.02334 * 15 14 13
18 18 H 1.07998 * 120.00027 * 23.27007 * 17 15 14
19 19 C 1.38762 * 120.00387 * 203.27554 * 17 15 14
20 20 N 1.31625 * 120.00039 * 13.57288 * 19 17 15
21 21 Si 1.86800 * 120.00404 * 193.57765 * 19 17 15
22 22 H 1.48500 * 109.47222 * 89.99637 * 21 19 17
23 23 H 1.48495 * 109.47414 * 209.99903 * 21 19 17
24 24 H 1.48501 * 109.46638 * 329.99749 * 21 19 17
25 25 C 1.38116 * 119.96775 * 179.97438 * 2 1 3
26 26 H 1.08999 * 109.47025 * 89.99470 * 1 2 3
27 27 H 1.08990 * 109.47366 * 209.99989 * 1 2 3
28 28 H 1.09002 * 109.46769 * 329.99939 * 1 2 3
29 29 H 1.07997 * 119.94780 * 359.97438 * 3 2 1
30 30 H 1.08000 * 119.96970 * 179.97438 * 4 3 2
31 31 H 1.07996 * 120.02821 * 179.97438 * 5 4 3
32 32 H 1.08004 * 120.45799 * 179.97438 * 13 12 10
33 33 H 1.09008 * 109.46882 * 95.03663 * 16 15 14
34 34 H 1.08995 * 109.47637 * 215.03540 * 16 15 14
35 35 H 1.09002 * 109.47185 * 335.04250 * 16 15 14
36 36 H 0.96996 * 119.99903 * 179.97438 * 20 19 17
37 37 H 1.08005 * 120.03213 * 0.04369 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1979 1.1980 0.0000
4 6 3.5804 1.2014 0.0005
5 6 4.2754 0.0073 0.0005
6 6 3.5847 -1.1958 -0.0053
7 8 4.2659 -2.3717 -0.0106
8 6 4.3423 -3.0577 -1.1771
9 7 3.8157 -2.5594 -2.2884
10 6 3.8922 -3.2206 -3.4278
11 17 3.1935 -2.5216 -4.8551
12 7 4.4785 -4.3990 -3.5139
13 6 5.0244 -4.9693 -2.4507
14 6 4.9745 -4.3079 -1.2285
15 7 5.5366 -4.8737 -0.0846
16 6 6.9359 -4.6031 0.2546
17 6 4.7816 -5.6815 0.7208
18 1 3.9144 -6.1852 0.3199
19 6 5.1296 -5.8536 2.0530
20 7 6.0089 -5.0498 2.6126
21 14 4.3505 -7.2262 3.0521
22 1 5.1772 -8.4543 2.9352
23 1 4.2707 -6.8171 4.4774
24 1 2.9842 -7.4984 2.5380
25 6 2.1970 -1.1965 0.0005
26 1 -0.3633 0.0001 -1.0277
27 1 -0.3633 -0.8899 0.5138
28 1 -0.3633 0.8900 0.5139
29 1 1.6566 2.1325 -0.0004
30 1 4.1176 2.1383 0.0001
31 1 5.3553 0.0105 0.0005
32 1 5.5018 -5.9347 -2.5317
33 1 6.9850 -3.7721 0.9583
34 1 7.3779 -5.4901 0.7085
35 1 7.4859 -4.3457 -0.6505
36 1 6.2519 -5.1700 3.5439
37 1 1.6569 -2.1319 0.0002
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001166802031.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:00:22
Heat of formation + Delta-G solvation = 53.875507 kcal
Electronic energy + Delta-G solvation = -24223.818459 eV
Core-core repulsion = 20607.426110 eV
Total energy + Delta-G solvation = -3616.392349 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 319.083 amu
Computer time = 1.69 seconds
Orbital eigenvalues (eV)
-42.49934 -40.93133 -39.01291 -38.11921 -37.55208 -34.52031 -33.85047 -33.49199
-31.48950 -30.60038 -28.06159 -27.90110 -26.15006 -25.88414 -23.50021 -23.31405
-22.52895 -20.04098 -19.33073 -19.14867 -17.60229 -17.54990 -17.41893 -16.95217
-16.26918 -16.08618 -15.98133 -15.17250 -15.09239 -14.75553 -14.53298 -14.38416
-14.16266 -14.11327 -13.33562 -13.14820 -13.06752 -12.86022 -12.71259 -12.68023
-12.56251 -12.48304 -12.33009 -12.19185 -12.09471 -11.96202 -11.34952 -11.00812
-10.60232 -9.94341 -9.79089 -9.59497 -9.04453 -7.95671 -5.51887 -0.30295
-0.09495 0.09086 0.29916 0.32919 1.45828 1.46345 1.55109 1.87426
2.39854 2.52273 2.77370 2.89001 3.20062 3.24033 3.64361 3.76949
3.84321 3.90186 4.09822 4.28297 4.34466 4.40423 4.61378 4.71630
4.80000 4.83165 4.86100 4.99230 5.20791 5.21568 5.36628 5.37395
5.51290 5.53385 5.57820 5.61522 5.82772 6.18775 6.39599 6.73790
6.97936 7.68057 8.06028 9.07221
Molecular weight = 319.08amu
Principal moments of inertia in cm(-1)
A = 0.009966 B = 0.005571 C = 0.004197
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2808.819446 B = 5025.005221 C = 6670.081612
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.075 4.075
3 C -0.115 4.115
4 C -0.095 4.095
5 C -0.141 4.141
6 C 0.065 3.935
7 O -0.239 6.239
8 C 0.340 3.660
9 N -0.559 5.559
10 C 0.367 3.633
11 Cl 0.037 6.963
12 N -0.520 5.520
13 C 0.172 3.828
14 C 0.077 3.923
15 N -0.549 5.549
16 C 0.177 3.823
17 C -0.278 4.278
18 H 0.069 0.931
19 C -0.030 4.030
20 N -0.921 5.921
21 Si 0.973 3.027
22 H -0.275 1.275
23 H -0.293 1.293
24 H -0.272 1.272
25 C -0.137 4.137
26 H 0.082 0.918
27 H 0.061 0.939
28 H 0.094 0.906
29 H 0.165 0.835
30 H 0.163 0.837
31 H 0.122 0.878
32 H 0.205 0.795
33 H 0.011 0.989
34 H 0.038 0.962
35 H 0.031 0.969
36 H 0.254 0.746
37 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.788 10.798 -8.716 15.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.075 4.075
3 C -0.133 4.133
4 C -0.113 4.113
5 C -0.159 4.159
6 C 0.023 3.977
7 O -0.141 6.141
8 C 0.152 3.848
9 N -0.293 5.293
10 C 0.073 3.927
11 Cl 0.065 6.935
12 N -0.241 5.241
13 C 0.009 3.991
14 C -0.024 4.024
15 N -0.267 5.267
16 C 0.034 3.966
17 C -0.406 4.406
18 H 0.087 0.913
19 C -0.227 4.227
20 N -0.564 5.564
21 Si 0.800 3.200
22 H -0.201 1.201
23 H -0.220 1.220
24 H -0.197 1.197
25 C -0.156 4.156
26 H 0.101 0.899
27 H 0.080 0.920
28 H 0.112 0.888
29 H 0.183 0.817
30 H 0.181 0.819
31 H 0.140 0.860
32 H 0.222 0.778
33 H 0.030 0.970
34 H 0.057 0.943
35 H 0.050 0.950
36 H 0.063 0.937
37 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -7.029 11.174 -9.106 16.037
hybrid contribution 0.158 -1.048 1.487 1.826
sum -6.871 10.126 -7.618 14.415
Atomic orbital electron populations
1.20849 0.88526 1.03878 1.03412 1.20132 0.97872 0.91719 0.97801
1.21509 0.94063 0.98375 0.99330 1.21357 0.94784 0.97264 0.97903
1.21325 1.00639 0.91675 1.02277 1.19120 0.91216 0.84258 1.03106
1.84898 1.68770 1.32913 1.27493 1.22167 0.89726 0.89416 0.83464
1.67311 1.24870 1.38521 0.98594 1.22706 0.94031 0.88201 0.87771
1.98392 1.80997 1.82371 1.31774 1.67908 1.13019 1.10281 1.32926
1.24004 0.91399 0.98998 0.84681 1.19072 1.00327 0.90438 0.92542
1.41294 1.08670 1.53507 1.23229 1.20712 0.81296 0.99238 0.95358
1.19310 1.10879 1.19450 0.91002 0.91281 1.25814 0.99455 1.00442
0.97024 1.70240 1.36153 1.37677 1.12337 0.85210 0.78506 0.78982
0.77341 1.20058 1.21968 1.19735 1.21207 0.92568 0.99264 1.02523
0.89942 0.91996 0.88774 0.81724 0.81937 0.85958 0.77823 0.97010
0.94307 0.95048 0.93662 0.87714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.06 10.01 71.24 0.71 -1.35 16
2 C -0.08 -1.96 5.88 -19.88 -0.12 -2.08 16
3 C -0.12 -2.50 9.70 22.29 0.22 -2.29 16
4 C -0.10 -2.29 10.04 22.25 0.22 -2.07 16
5 C -0.14 -4.62 9.99 22.37 0.22 -4.40 16
6 C 0.06 2.54 5.12 22.52 0.12 2.66 16
7 O -0.24 -11.26 9.78 -31.89 -0.31 -11.58 16
8 C 0.34 15.04 7.46 85.04 0.63 15.67 16
9 N -0.56 -22.19 9.31 -303.00 -2.82 -25.01 16
10 C 0.37 13.18 8.17 180.80 1.48 14.65 16
11 Cl 0.04 1.05 29.26 -2.72 -0.08 0.97 16
12 N -0.52 -18.52 10.39 -190.28 -1.98 -20.50 16
13 C 0.17 6.34 11.25 84.80 0.95 7.30 16
14 C 0.08 3.42 5.10 38.60 0.20 3.61 16
15 N -0.55 -27.24 2.79 -534.05 -1.49 -28.73 16
16 C 0.18 8.55 8.97 127.77 1.15 9.70 16
17 C -0.28 -14.94 9.62 84.04 0.81 -14.13 16
18 H 0.07 3.67 7.86 -2.91 -0.02 3.65 16
19 C -0.03 -1.60 5.08 84.85 0.43 -1.17 16
20 N -0.92 -52.69 10.75 21.64 0.23 -52.45 16
21 Si 0.97 43.72 29.57 68.60 2.03 45.75 16
22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16
24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
25 C -0.14 -4.80 9.40 22.37 0.21 -4.59 16
26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
27 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16
28 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16
29 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16
30 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16
31 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16
32 H 0.21 6.38 8.06 -2.91 -0.02 6.36 16
33 H 0.01 0.62 7.33 -2.38 -0.02 0.61 16
34 H 0.04 1.94 7.37 -2.39 -0.02 1.92 16
35 H 0.03 1.29 8.01 -2.39 -0.02 1.27 16
36 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16
37 H 0.10 3.91 8.06 -2.91 -0.02 3.89 16
Total: -1.00 -65.35 342.47 3.92 -61.44
By element:
Atomic # 1 Polarization: 7.49 SS G_CDS: 1.10 Total: 8.58 kcal
Atomic # 6 Polarization: 14.29 SS G_CDS: 7.24 Total: 21.53 kcal
Atomic # 7 Polarization: -120.64 SS G_CDS: -6.05 Total: -126.70 kcal
Atomic # 8 Polarization: -11.26 SS G_CDS: -0.31 Total: -11.58 kcal
Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal
Atomic # 17 Polarization: 1.05 SS G_CDS: -0.08 Total: 0.97 kcal
Total: -65.35 3.92 -61.44 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166802031.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.314 kcal
(2) G-P(sol) polarization free energy of solvation -65.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.959 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.916 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.876 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.69 seconds