Wall clock time and date at job start Tue Mar 31 2020 13:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35479 * 116.99816 * 2 1 4 4 N 1.32329 * 119.13545 * 359.97438 * 3 2 1 5 5 C 1.32511 * 120.97294 * 180.02562 * 4 3 2 6 6 C 1.38263 * 119.25057 * 359.97438 * 5 4 3 7 7 Cl 1.73600 * 120.78859 * 179.97438 * 6 5 4 8 8 C 1.39759 * 118.41543 * 0.02562 * 6 5 4 9 9 N 1.38541 * 120.50523 * 179.97438 * 8 6 5 10 10 C 1.36930 * 119.99963 * 6.57157 * 9 8 6 11 11 H 1.07997 * 119.99997 * 49.59586 * 10 9 8 12 12 C 1.38852 * 119.99808 * 229.59383 * 10 9 8 13 13 N 1.31532 * 120.00160 * 8.73295 * 12 10 9 14 14 Si 1.86803 * 119.99569 * 189.00430 * 12 10 9 15 15 H 1.48497 * 109.47318 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46901 * 120.00494 * 14 12 10 17 17 H 1.48498 * 109.46762 * 240.00093 * 14 12 10 18 18 C 1.46502 * 119.99970 * 186.57550 * 9 8 6 19 19 C 1.50699 * 109.47116 * 269.57385 * 18 9 8 20 20 C 1.38234 * 120.00162 * 275.23152 * 19 18 9 21 21 C 1.38229 * 119.99864 * 179.76465 * 20 19 18 22 22 C 1.38238 * 120.00293 * 0.51020 * 21 20 19 23 23 C 1.38233 * 119.99494 * 359.74463 * 22 21 20 24 24 C 1.38227 * 119.99788 * 95.50414 * 19 18 9 25 25 N 1.32220 * 119.13243 * 180.27174 * 3 2 1 26 26 H 1.09000 * 109.46868 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47260 * 300.00574 * 1 2 3 28 28 H 1.09005 * 109.46591 * 60.00668 * 1 2 3 29 29 H 1.07999 * 120.37087 * 179.97438 * 5 4 3 30 30 H 0.97003 * 120.00146 * 180.02562 * 13 12 10 31 31 H 1.09001 * 109.47116 * 29.57820 * 18 9 8 32 32 H 1.09006 * 109.46909 * 149.57325 * 18 9 8 33 33 H 1.08004 * 120.00080 * 359.97438 * 20 19 18 34 34 H 1.08008 * 120.00069 * 180.23185 * 21 20 19 35 35 H 1.07991 * 120.00519 * 179.72441 * 22 21 20 36 36 H 1.08005 * 120.00071 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.00093 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 7 1.3067 2.3059 -0.0005 5 6 1.8701 3.5053 -0.0010 6 6 3.2492 3.6039 -0.0005 7 17 4.0292 5.1548 -0.0018 8 6 4.0002 2.4253 0.0000 9 7 5.3848 2.4736 0.0000 10 6 6.0279 3.6749 0.1352 11 1 5.7491 4.3501 0.9307 12 6 7.0384 4.0249 -0.7504 13 7 7.2629 3.2882 -1.8166 14 14 8.0842 5.5379 -0.4234 15 1 7.6376 6.1856 0.8361 16 1 9.5083 5.1370 -0.2954 17 1 7.9383 6.4934 -1.5507 18 6 6.1608 1.2395 -0.1447 19 6 6.4415 0.6599 1.2178 20 6 7.5272 1.1056 1.9482 21 6 7.7818 0.5774 3.2000 22 6 6.9569 -0.4040 3.7170 23 6 5.8743 -0.8534 2.9843 24 6 5.6166 -0.3214 1.7347 25 7 3.3654 1.2564 -0.0055 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.2588 4.3957 -0.0019 30 1 7.9691 3.5325 -2.4351 31 1 5.5932 0.5206 -0.7355 32 1 7.1028 1.4595 -0.6471 33 1 8.1745 1.8689 1.5423 34 1 8.6279 0.9283 3.7723 35 1 7.1584 -0.8198 4.6930 36 1 5.2300 -1.6205 3.3879 37 1 4.7712 -0.6730 1.1620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166999849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:48 Heat of formation + Delta-G solvation = 46.544890 kcal Electronic energy + Delta-G solvation = -24625.223507 eV Core-core repulsion = 21008.513279 eV Total energy + Delta-G solvation = -3616.710229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.83549 -40.20543 -39.28927 -37.75504 -36.96054 -34.51388 -33.47615 -32.61071 -31.65558 -30.71309 -28.33857 -27.76387 -26.34823 -24.43594 -23.48954 -23.24850 -21.97885 -20.12753 -19.06718 -18.30977 -17.64639 -17.27285 -17.18767 -16.84023 -16.19919 -16.04436 -15.83314 -15.48451 -15.21682 -15.08068 -14.54429 -14.21218 -14.14849 -13.70096 -13.42212 -13.20411 -13.08144 -12.77241 -12.66713 -12.60371 -12.36700 -12.17026 -12.01646 -11.79463 -11.69592 -11.68196 -11.27188 -10.58392 -9.93144 -9.81975 -9.70210 -9.52816 -8.65035 -8.20878 -6.02945 0.29794 0.48834 0.61649 0.61934 1.37807 1.42269 1.48446 1.57586 1.85628 2.28409 2.78092 2.89544 3.10100 3.22287 3.42375 3.98153 4.08238 4.14409 4.22539 4.27991 4.41027 4.50747 4.51142 4.55706 4.71731 4.77152 4.79163 4.88737 5.10624 5.16170 5.25156 5.30525 5.48539 5.68107 5.69123 5.90683 5.97729 6.16659 6.25185 6.36211 6.65432 7.15627 7.29232 7.75461 8.70683 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.009602 B = 0.007440 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.346531 B = 3762.502900 C = 5957.332357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.312 6.312 3 C 0.520 3.480 4 N -0.626 5.626 5 C 0.207 3.793 6 C -0.247 4.247 7 Cl -0.044 7.044 8 C 0.419 3.581 9 N -0.392 5.392 10 C -0.309 4.309 11 H 0.100 0.900 12 C 0.020 3.980 13 N -0.891 5.891 14 Si 0.957 3.043 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.279 1.279 18 C 0.166 3.834 19 C -0.103 4.103 20 C -0.111 4.111 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.111 4.111 25 N -0.607 5.607 26 H 0.130 0.870 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.195 0.805 30 H 0.272 0.728 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.979 -3.302 6.846 9.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.214 6.214 3 C 0.215 3.785 4 N -0.365 5.365 5 C 0.049 3.951 6 C -0.287 4.287 7 Cl -0.015 7.015 8 C 0.171 3.829 9 N -0.082 5.082 10 C -0.438 4.438 11 H 0.117 0.883 12 C -0.185 4.185 13 N -0.527 5.527 14 Si 0.781 3.219 15 H -0.181 1.181 16 H -0.196 1.196 17 H -0.205 1.205 18 C 0.043 3.957 19 C -0.104 4.104 20 C -0.130 4.130 21 C -0.148 4.148 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.130 4.130 25 N -0.349 5.349 26 H 0.147 0.853 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.212 0.788 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.853 -4.315 6.645 9.291 hybrid contribution 0.809 1.739 -0.499 1.982 sum -4.044 -2.576 6.146 7.795 Atomic orbital electron populations 1.23152 0.74229 1.04847 1.02683 1.86002 1.25001 1.22852 1.87532 1.20466 0.85409 0.85231 0.87443 1.68115 1.39367 0.98000 1.31040 1.22769 0.89383 0.95353 0.87601 1.21654 0.94533 0.87910 1.24592 1.98270 1.80508 1.25291 1.97464 1.18746 0.87496 0.86791 0.89820 1.42512 0.98380 1.06767 1.60581 1.19919 1.15938 0.95014 1.12889 0.88302 1.26053 0.98897 1.00041 0.93466 1.69978 1.31433 1.39831 1.11422 0.85371 0.78650 0.78902 0.78986 1.18093 1.19586 1.20516 1.20273 0.97414 0.85271 0.92710 1.20378 0.95824 0.96702 0.97506 1.21136 0.97210 0.99144 0.95526 1.21381 1.00704 0.97558 0.95125 1.21423 0.94815 0.97213 1.00604 1.21381 0.98577 1.00811 0.94259 1.21231 0.98453 0.96630 0.96694 1.66997 1.08487 1.27461 1.31956 0.85250 0.92030 0.92244 0.78844 0.91804 0.92926 0.89319 0.87268 0.83988 0.83196 0.84308 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.11 10.36 113.37 1.17 2.29 16 2 O -0.31 -11.19 10.56 -87.79 -0.93 -12.11 16 3 C 0.52 21.52 8.49 180.60 1.53 23.05 16 4 N -0.63 -23.77 9.22 -313.62 -2.89 -26.66 16 5 C 0.21 7.63 11.11 84.60 0.94 8.57 16 6 C -0.25 -10.63 6.34 22.64 0.14 -10.49 16 7 Cl -0.04 -1.78 24.00 -2.72 -0.07 -1.85 16 8 C 0.42 19.97 7.34 133.19 0.98 20.94 16 9 N -0.39 -19.21 2.51 -521.23 -1.31 -20.52 16 10 C -0.31 -15.05 6.31 84.04 0.53 -14.52 16 11 H 0.10 4.84 5.88 -2.91 -0.02 4.83 16 12 C 0.02 0.95 5.17 84.88 0.44 1.39 16 13 N -0.89 -45.93 11.60 21.65 0.25 -45.68 16 14 Si 0.96 39.02 29.56 68.60 2.03 41.05 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 16 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 18 C 0.17 7.82 5.10 85.63 0.44 8.26 16 19 C -0.10 -4.27 5.46 -19.87 -0.11 -4.38 16 20 C -0.11 -4.24 9.72 22.27 0.22 -4.02 16 21 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 22 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 23 C -0.13 -4.10 10.05 22.27 0.22 -3.87 16 24 C -0.11 -4.25 9.68 22.27 0.22 -4.03 16 25 N -0.61 -28.02 8.96 -310.94 -2.79 -30.81 16 26 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.45 8.09 -2.39 -0.02 1.43 16 28 H 0.06 1.42 8.09 -2.38 -0.02 1.40 16 29 H 0.19 5.51 8.06 -2.91 -0.02 5.49 16 30 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.05 2.57 7.40 -2.39 -0.02 2.56 16 32 H 0.09 4.48 5.95 -2.38 -0.01 4.46 16 33 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 34 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.15 3.01 8.06 -2.92 -0.02 2.98 16 36 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.11 4.56 7.66 -2.91 -0.02 4.54 16 Total: -1.00 -59.46 332.75 2.57 -56.89 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 1.10 Total: 23.43 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 7.17 Total: 16.26 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.73 Total: -123.67 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.93 Total: -12.11 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -59.46 2.57 -56.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166999849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.436 kcal (2) G-P(sol) polarization free energy of solvation -59.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds