Wall clock time and date at job start Tue Mar 31 2020 13:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40039 * 126.14572 * 2 1 4 4 C 1.31034 * 108.80236 * 180.02562 * 3 2 1 5 5 Cl 1.73604 * 125.61284 * 180.02562 * 4 3 2 6 6 C 1.39316 * 108.76994 * 359.73941 * 4 3 2 7 7 C 1.36732 * 126.13653 * 180.02562 * 2 1 3 8 8 C 1.47021 * 126.48192 * 359.95804 * 7 2 1 9 9 O 1.21685 * 119.99583 * 7.12138 * 8 7 2 10 10 N 1.34770 * 120.00522 * 187.12196 * 8 7 2 11 11 C 1.36842 * 119.99856 * 356.49554 * 10 8 7 12 12 H 1.07992 * 119.99948 * 54.87817 * 11 10 8 13 13 C 1.39053 * 120.00080 * 234.87920 * 11 10 8 14 14 N 1.31364 * 120.00236 * 198.20260 * 13 11 10 15 15 Si 1.86798 * 119.99908 * 18.20780 * 13 11 10 16 16 H 1.48501 * 109.47207 * 95.05151 * 15 13 11 17 17 H 1.48501 * 109.47136 * 215.04992 * 15 13 11 18 18 H 1.48494 * 109.47509 * 335.04987 * 15 13 11 19 19 C 1.46499 * 120.00085 * 176.50305 * 10 8 7 20 20 C 1.50704 * 109.47050 * 275.21918 * 19 10 8 21 21 C 1.38235 * 119.99745 * 86.78942 * 20 19 10 22 22 C 1.38234 * 120.00253 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99681 * 0.06904 * 22 21 20 24 24 C 1.38236 * 120.00255 * 359.91525 * 23 22 21 25 25 C 1.38232 * 120.00314 * 266.77346 * 20 19 10 26 26 H 1.08995 * 109.46873 * 272.19192 * 1 2 3 27 27 H 1.09008 * 109.46923 * 32.18606 * 1 2 3 28 28 H 1.08998 * 109.47617 * 152.18631 * 1 2 3 29 29 H 1.08001 * 126.16957 * 180.29298 * 6 4 3 30 30 H 0.96992 * 120.00301 * 180.02562 * 14 13 11 31 31 H 1.09009 * 109.47403 * 155.22771 * 19 10 8 32 32 H 1.08997 * 109.47776 * 35.22453 * 19 10 8 33 33 H 1.08000 * 120.00105 * 359.70617 * 21 20 19 34 34 H 1.07997 * 120.00368 * 179.97438 * 22 21 20 35 35 H 1.08003 * 119.99909 * 179.97438 * 23 22 21 36 36 H 1.07993 * 120.00327 * 180.02562 * 24 23 22 37 37 H 1.08006 * 119.99858 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2910 1.1308 0.0000 4 6 3.5418 0.7402 -0.0006 5 17 4.9274 1.7861 -0.0001 6 6 3.5765 -0.6525 0.0051 7 6 2.2713 -1.1043 -0.0005 8 6 1.8321 -2.5073 -0.0003 9 8 0.6523 -2.7755 -0.1302 10 7 2.7361 -3.4965 0.1439 11 6 4.0697 -3.1991 0.2180 12 1 4.4263 -2.4983 0.9582 13 6 4.9658 -3.7993 -0.6597 14 7 6.2498 -3.8090 -0.3828 15 14 4.3435 -4.5915 -2.2328 16 1 4.4482 -3.6202 -3.3512 17 1 5.1630 -5.7911 -2.5406 18 1 2.9247 -4.9931 -2.0572 19 6 2.2909 -4.8901 0.2211 20 6 1.9125 -5.2185 1.6423 21 6 0.6317 -4.9602 2.0938 22 6 0.2843 -5.2619 3.3973 23 6 1.2181 -5.8207 4.2498 24 6 2.4988 -6.0794 3.7982 25 6 2.8458 -5.7785 2.4944 26 1 -0.3633 0.0393 1.0269 27 1 -0.3633 0.8698 -0.5475 28 1 -0.3634 -0.9089 -0.4795 29 1 4.4639 -1.2680 0.0105 30 1 6.8749 -4.2273 -0.9953 31 1 3.0983 -5.5478 -0.1011 32 1 1.4263 -5.0318 -0.4272 33 1 -0.0963 -4.5186 1.4294 34 1 -0.7162 -5.0597 3.7502 35 1 0.9468 -6.0561 5.2683 36 1 3.2281 -6.5164 4.4641 37 1 3.8466 -5.9802 2.1417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192911971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:04 Heat of formation + Delta-G solvation = 86.057557 kcal Electronic energy + Delta-G solvation = -24572.338704 eV Core-core repulsion = 20957.341874 eV Total energy + Delta-G solvation = -3614.996831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.76477 -39.22194 -38.02764 -36.31910 -35.32733 -32.49579 -32.46923 -31.36816 -30.44639 -29.65549 -26.38540 -26.02620 -25.13213 -22.23375 -22.03472 -21.02383 -20.39732 -19.21703 -18.03205 -16.58866 -15.91281 -15.63899 -15.29921 -15.12862 -14.87074 -14.56065 -14.48287 -13.94209 -13.86278 -13.33632 -12.98417 -12.85472 -12.73196 -12.52798 -12.43081 -12.04007 -11.87264 -11.47983 -11.31709 -11.22596 -11.16277 -11.02696 -10.52979 -10.44371 -10.13397 -10.00358 -9.38588 -8.98539 -8.76962 -8.48195 -8.32936 -8.04069 -7.82095 -6.65602 -4.44287 1.67821 1.76989 1.84500 1.89720 2.89884 3.01579 3.13116 3.15444 3.19537 3.95680 4.00589 4.06927 4.46953 4.70003 5.06175 5.27739 5.29061 5.39142 5.52241 5.52842 5.60944 5.75689 5.81801 5.96162 6.05042 6.07888 6.14491 6.28262 6.34088 6.43934 6.51877 6.88152 6.89459 7.09779 7.16353 7.18212 7.34361 7.44131 7.82308 7.86566 8.05677 8.71024 8.99891 9.35877 10.39909 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.005749 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.445239 B = 4869.040114 C = 5964.208717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.340 5.340 3 N -0.284 5.284 4 C 0.100 3.900 5 Cl -0.008 7.008 6 C -0.194 4.194 7 C 0.066 3.934 8 C 0.551 3.449 9 O -0.590 6.590 10 N -0.434 5.434 11 C -0.362 4.362 12 H 0.114 0.886 13 C 0.082 3.918 14 N -0.843 5.843 15 Si 0.862 3.138 16 H -0.271 1.271 17 H -0.279 1.279 18 H -0.253 1.253 19 C 0.150 3.850 20 C -0.088 4.088 21 C -0.101 4.101 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.130 4.130 25 C -0.092 4.092 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.207 0.793 30 H 0.279 0.721 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 -0.287 2.902 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.127 5.127 3 N -0.113 5.113 4 C -0.088 4.088 5 Cl 0.020 6.980 6 C -0.224 4.224 7 C -0.062 4.062 8 C 0.340 3.660 9 O -0.475 6.475 10 N -0.153 5.153 11 C -0.489 4.489 12 H 0.131 0.869 13 C -0.129 4.129 14 N -0.475 5.475 15 Si 0.686 3.314 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.176 1.176 19 C 0.028 3.972 20 C -0.090 4.090 21 C -0.119 4.119 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.111 4.111 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.224 0.776 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.163 0.556 2.773 7.701 hybrid contribution 0.652 -0.746 -0.701 1.214 sum -6.511 -0.190 2.072 6.835 Atomic orbital electron populations 1.22074 0.73318 1.05170 1.03327 1.48577 1.06281 1.01814 1.56065 1.77114 1.00588 1.08238 1.25381 1.22568 0.88605 0.91728 1.05875 1.98347 1.36036 1.66425 1.97192 1.23372 0.99439 0.91298 1.08244 1.21050 0.90227 0.89423 1.05526 1.17247 0.85572 0.83430 0.79788 1.90609 1.17312 1.84081 1.55536 1.43242 1.06602 1.03037 1.62412 1.19179 0.79556 1.30995 1.19144 0.86883 1.25489 0.94813 0.95216 0.97412 1.69709 1.02285 1.39732 1.35777 0.87075 0.80538 0.79641 0.84118 1.19684 1.20391 1.17632 1.20734 1.00053 0.84465 0.91981 1.20335 0.93548 0.97924 0.97156 1.21270 0.96540 0.98270 0.95843 1.21059 0.99175 1.00636 0.94202 1.21042 0.94013 1.00453 0.99130 1.21076 0.96317 1.01358 0.96015 1.21167 0.99223 0.97405 0.93297 0.91148 0.90154 0.87056 0.77620 0.90996 0.90052 0.90480 0.85428 0.86824 0.86913 0.86583 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.54 11.10 59.85 0.66 2.21 16 2 N -0.34 -6.61 4.07 -63.97 -0.26 -6.87 16 3 N -0.28 -5.63 12.55 32.84 0.41 -5.22 16 4 C 0.10 1.99 7.80 -17.49 -0.14 1.85 16 5 Cl -0.01 -0.13 29.32 -51.86 -1.52 -1.65 16 6 C -0.19 -4.11 9.08 -39.23 -0.36 -4.47 16 7 C 0.07 1.41 6.87 -82.17 -0.56 0.84 16 8 C 0.55 12.05 7.57 -12.70 -0.10 11.95 16 9 O -0.59 -12.83 13.03 5.20 0.07 -12.76 16 10 N -0.43 -9.47 1.80 -117.46 -0.21 -9.68 16 11 C -0.36 -8.37 6.65 -15.01 -0.10 -8.47 16 12 H 0.11 2.81 6.07 -52.49 -0.32 2.50 16 13 C 0.08 1.92 5.24 -17.45 -0.09 1.82 16 14 N -0.84 -20.74 13.95 55.50 0.77 -19.96 16 15 Si 0.86 18.38 26.64 -169.99 -4.53 13.86 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.25 -5.24 5.51 56.52 0.31 -4.92 16 19 C 0.15 2.98 3.53 -5.19 -0.02 2.96 16 20 C -0.09 -1.63 5.42 -104.62 -0.57 -2.20 16 21 C -0.10 -1.75 9.46 -39.58 -0.37 -2.12 16 22 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 23 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 24 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.09 -1.60 9.69 -39.58 -0.38 -1.99 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 28 H 0.11 1.75 6.14 -51.93 -0.32 1.43 16 29 H 0.21 4.63 4.69 -52.49 -0.25 4.39 16 30 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.08 1.59 5.57 -51.92 -0.29 1.31 16 32 H 0.08 1.52 7.37 -51.93 -0.38 1.13 16 33 H 0.13 2.27 7.01 -52.49 -0.37 1.90 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -26.05 327.28 -7.23 -33.28 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.69 Total: 8.68 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -3.22 Total: -4.61 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.72 Total: -41.73 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.53 Total: 13.86 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.65 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.05 -7.23 -33.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192911971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.339 kcal (2) G-P(sol) polarization free energy of solvation -26.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds