Wall clock time and date at job start Tue Mar 31 2020 13:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40039 * 126.14572 * 2 1 4 4 C 1.31034 * 108.80236 * 180.02562 * 3 2 1 5 5 Cl 1.73604 * 125.61284 * 180.02562 * 4 3 2 6 6 C 1.39316 * 108.76994 * 359.73941 * 4 3 2 7 7 C 1.36732 * 126.13653 * 180.02562 * 2 1 3 8 8 C 1.47021 * 126.48192 * 359.95804 * 7 2 1 9 9 O 1.21685 * 119.99583 * 7.12138 * 8 7 2 10 10 N 1.34770 * 120.00522 * 187.12196 * 8 7 2 11 11 C 1.36842 * 119.99856 * 356.49554 * 10 8 7 12 12 H 1.07992 * 119.99948 * 54.87817 * 11 10 8 13 13 C 1.39053 * 120.00080 * 234.87920 * 11 10 8 14 14 N 1.31364 * 120.00236 * 198.20260 * 13 11 10 15 15 Si 1.86798 * 119.99908 * 18.20780 * 13 11 10 16 16 H 1.48501 * 109.47207 * 95.05151 * 15 13 11 17 17 H 1.48501 * 109.47136 * 215.04992 * 15 13 11 18 18 H 1.48494 * 109.47509 * 335.04987 * 15 13 11 19 19 C 1.46499 * 120.00085 * 176.50305 * 10 8 7 20 20 C 1.50704 * 109.47050 * 275.21918 * 19 10 8 21 21 C 1.38235 * 119.99745 * 86.78942 * 20 19 10 22 22 C 1.38234 * 120.00253 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99681 * 0.06904 * 22 21 20 24 24 C 1.38236 * 120.00255 * 359.91525 * 23 22 21 25 25 C 1.38232 * 120.00314 * 266.77346 * 20 19 10 26 26 H 1.08995 * 109.46873 * 272.19192 * 1 2 3 27 27 H 1.09008 * 109.46923 * 32.18606 * 1 2 3 28 28 H 1.08998 * 109.47617 * 152.18631 * 1 2 3 29 29 H 1.08001 * 126.16957 * 180.29298 * 6 4 3 30 30 H 0.96992 * 120.00301 * 180.02562 * 14 13 11 31 31 H 1.09009 * 109.47403 * 155.22771 * 19 10 8 32 32 H 1.08997 * 109.47776 * 35.22453 * 19 10 8 33 33 H 1.08000 * 120.00105 * 359.70617 * 21 20 19 34 34 H 1.07997 * 120.00368 * 179.97438 * 22 21 20 35 35 H 1.08003 * 119.99909 * 179.97438 * 23 22 21 36 36 H 1.07993 * 120.00327 * 180.02562 * 24 23 22 37 37 H 1.08006 * 119.99858 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2910 1.1308 0.0000 4 6 3.5418 0.7402 -0.0006 5 17 4.9274 1.7861 -0.0001 6 6 3.5765 -0.6525 0.0051 7 6 2.2713 -1.1043 -0.0005 8 6 1.8321 -2.5073 -0.0003 9 8 0.6523 -2.7755 -0.1302 10 7 2.7361 -3.4965 0.1439 11 6 4.0697 -3.1991 0.2180 12 1 4.4263 -2.4983 0.9582 13 6 4.9658 -3.7993 -0.6597 14 7 6.2498 -3.8090 -0.3828 15 14 4.3435 -4.5915 -2.2328 16 1 4.4482 -3.6202 -3.3512 17 1 5.1630 -5.7911 -2.5406 18 1 2.9247 -4.9931 -2.0572 19 6 2.2909 -4.8901 0.2211 20 6 1.9125 -5.2185 1.6423 21 6 0.6317 -4.9602 2.0938 22 6 0.2843 -5.2619 3.3973 23 6 1.2181 -5.8207 4.2498 24 6 2.4988 -6.0794 3.7982 25 6 2.8458 -5.7785 2.4944 26 1 -0.3633 0.0393 1.0269 27 1 -0.3633 0.8698 -0.5475 28 1 -0.3634 -0.9089 -0.4795 29 1 4.4639 -1.2680 0.0105 30 1 6.8749 -4.2273 -0.9953 31 1 3.0983 -5.5478 -0.1011 32 1 1.4263 -5.0318 -0.4272 33 1 -0.0963 -4.5186 1.4294 34 1 -0.7162 -5.0597 3.7502 35 1 0.9468 -6.0561 5.2683 36 1 3.2281 -6.5164 4.4641 37 1 3.8466 -5.9802 2.1417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192911971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:03 Heat of formation + Delta-G solvation = 73.443977 kcal Electronic energy + Delta-G solvation = -24572.885670 eV Core-core repulsion = 20957.341874 eV Total energy + Delta-G solvation = -3615.543797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.35362 -40.71287 -39.47429 -37.76924 -37.02071 -34.21478 -33.91220 -32.88961 -31.68916 -31.18270 -27.84715 -27.52826 -26.84259 -23.75915 -23.33321 -22.48434 -21.86230 -20.91026 -19.67693 -18.06077 -17.42635 -17.26786 -16.88993 -16.69817 -16.28508 -16.03514 -15.83550 -15.55775 -15.38573 -14.86501 -14.41827 -14.21437 -14.17116 -14.04466 -13.99223 -13.41318 -13.28011 -13.01827 -12.90318 -12.82574 -12.57290 -12.50605 -11.98036 -11.84864 -11.71734 -11.58880 -11.11584 -10.73683 -10.31800 -9.73256 -9.64911 -9.60413 -9.54575 -8.48765 -6.28347 0.09328 0.39606 0.48712 0.59034 1.25198 1.29968 1.41129 1.44445 1.64202 2.21230 2.29212 2.57356 2.90802 3.08704 3.60371 3.89207 4.01159 4.03190 4.23841 4.35964 4.37806 4.39033 4.44769 4.53591 4.62507 4.70790 4.76445 4.79732 4.84311 5.17329 5.25449 5.43455 5.50931 5.64941 5.67032 5.75319 5.83932 6.07431 6.14959 6.20534 6.31930 6.91622 7.22407 7.60063 8.59956 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.005749 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.445239 B = 4869.040114 C = 5964.208717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.336 5.336 3 N -0.282 5.282 4 C 0.094 3.906 5 Cl 0.016 6.984 6 C -0.204 4.204 7 C 0.049 3.951 8 C 0.548 3.452 9 O -0.591 6.591 10 N -0.440 5.440 11 C -0.350 4.350 12 H 0.091 0.909 13 C 0.057 3.943 14 N -0.875 5.875 15 Si 0.901 3.099 16 H -0.282 1.282 17 H -0.271 1.271 18 H -0.246 1.246 19 C 0.151 3.849 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.129 4.129 25 C -0.110 4.110 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.190 0.810 30 H 0.283 0.717 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 -0.358 4.025 8.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.124 5.124 3 N -0.112 5.112 4 C -0.094 4.094 5 Cl 0.043 6.957 6 C -0.234 4.234 7 C -0.080 4.080 8 C 0.337 3.663 9 O -0.477 6.477 10 N -0.159 5.159 11 C -0.477 4.477 12 H 0.108 0.892 13 C -0.152 4.152 14 N -0.509 5.509 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.196 1.196 18 H -0.169 1.169 19 C 0.029 3.971 20 C -0.110 4.110 21 C -0.133 4.133 22 C -0.149 4.149 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.129 4.129 26 H 0.106 0.894 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.207 0.793 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.654 0.479 3.899 9.503 hybrid contribution 1.047 -0.670 -0.959 1.570 sum -7.606 -0.191 2.940 8.157 Atomic orbital electron populations 1.22370 0.70994 1.06178 1.04873 1.48938 1.07536 1.01049 1.54832 1.77086 1.00553 1.08381 1.25187 1.22667 0.89392 0.91608 1.05685 1.98349 1.34765 1.65472 1.97071 1.23176 0.99061 0.92066 1.09112 1.21063 0.90825 0.89733 1.06414 1.17376 0.85618 0.83757 0.79596 1.90595 1.17182 1.84287 1.55591 1.43322 1.06066 1.03883 1.62641 1.18915 0.80175 1.30284 1.18365 0.89177 1.25825 0.94745 0.95667 0.98923 1.69752 1.03083 1.41305 1.36783 0.86466 0.80653 0.79025 0.81399 1.20772 1.19583 1.16933 1.20728 0.99671 0.83238 0.93480 1.20244 0.94581 0.99706 0.96483 1.21273 0.95883 0.99122 0.97039 1.21398 1.00731 0.99582 0.93177 1.21471 0.93129 0.98663 1.00595 1.21402 0.97514 1.00552 0.95235 1.21208 0.98700 0.98419 0.94547 0.89422 0.87334 0.87689 0.79312 0.90712 0.90384 0.90713 0.86437 0.84069 0.83246 0.84045 0.86684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.70 11.10 127.77 1.42 4.12 16 2 N -0.34 -12.71 4.07 -356.31 -1.45 -14.16 16 3 N -0.28 -10.87 12.55 -50.02 -0.63 -11.50 16 4 C 0.09 3.70 7.80 85.07 0.66 4.36 16 5 Cl 0.02 0.52 29.32 -2.72 -0.08 0.44 16 6 C -0.20 -8.79 9.08 22.50 0.20 -8.59 16 7 C 0.05 2.09 6.87 40.65 0.28 2.37 16 8 C 0.55 24.10 7.57 86.55 0.65 24.76 16 9 O -0.59 -25.58 13.03 -4.30 -0.06 -25.63 16 10 N -0.44 -19.50 1.80 -643.76 -1.16 -20.65 16 11 C -0.35 -16.65 6.65 84.11 0.56 -16.09 16 12 H 0.09 4.69 6.07 -2.91 -0.02 4.67 16 13 C 0.06 2.71 5.24 84.96 0.45 3.15 16 14 N -0.88 -44.08 13.95 21.68 0.30 -43.78 16 15 Si 0.90 38.18 26.64 68.60 1.83 40.01 16 16 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 18 H -0.25 -10.06 5.51 99.48 0.55 -9.51 16 19 C 0.15 6.07 3.53 85.63 0.30 6.37 16 20 C -0.11 -4.03 5.42 -19.87 -0.11 -4.13 16 21 C -0.11 -3.88 9.46 22.27 0.21 -3.67 16 22 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 23 C -0.12 -3.04 10.05 22.27 0.22 -2.81 16 24 C -0.13 -3.63 10.05 22.27 0.22 -3.40 16 25 C -0.11 -3.79 9.69 22.27 0.22 -3.57 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.10 3.16 6.14 -2.39 -0.01 3.15 16 29 H 0.19 8.83 4.69 -2.91 -0.01 8.82 16 30 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.08 3.12 5.57 -2.38 -0.01 3.11 16 32 H 0.07 2.98 7.37 -2.39 -0.02 2.96 16 33 H 0.12 4.15 7.01 -2.91 -0.02 4.13 16 34 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -55.58 327.28 5.24 -50.34 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.96 Total: 25.48 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.52 Total: -0.54 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -2.93 Total: -90.10 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.06 Total: -25.63 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.83 Total: 40.01 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -0.08 Total: 0.44 kcal Total: -55.58 5.24 -50.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192911971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.787 kcal (2) G-P(sol) polarization free energy of solvation -55.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds