Wall clock time and date at job start Tue Mar 31 2020 13:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48501 * 109.47295 * 269.99551 * 3 2 1 5 5 H 1.48505 * 109.47129 * 29.99704 * 3 2 1 6 6 H 1.48504 * 109.47322 * 149.99801 * 3 2 1 7 7 C 1.37881 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99334 * 0.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 180.02562 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.52760 * 109.00861 * 233.58205 * 13 12 9 15 15 C 1.53046 * 109.38256 * 305.58983 * 14 13 12 16 16 C 1.47203 * 109.44723 * 181.25356 * 15 14 13 17 17 C 9.36609 * 139.78330 * 179.97438 * 2 1 3 18 18 C 9.48468 * 155.02150 * 179.97438 * 7 2 1 19 19 C 1.39538 * 120.13976 * 194.57294 * 18 17 16 20 20 C 1.37976 * 119.85317 * 179.79259 * 19 18 17 21 21 C 1.38339 * 120.14212 * 0.46502 * 20 19 18 22 22 C 1.38347 * 120.28812 * 359.78701 * 21 20 19 23 23 C 1.37974 * 120.14045 * 359.97438 * 22 21 20 24 24 C 1.53042 * 109.53591 * 61.23964 * 15 14 13 25 25 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 26 26 H 0.96999 * 119.99997 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.59343 * 353.42265 * 13 12 9 28 28 H 1.09010 * 109.58634 * 113.84364 * 13 12 9 29 29 H 1.09006 * 109.56563 * 185.55777 * 14 13 12 30 30 H 1.09001 * 109.35973 * 65.50306 * 14 13 12 31 31 H 1.08998 * 109.46354 * 301.21868 * 15 14 13 32 32 H 1.07999 * 120.07276 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.92675 * 180.25190 * 20 19 18 34 34 H 1.08003 * 119.85496 * 179.76495 * 21 20 19 35 35 H 1.08005 * 119.92566 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.06570 * 179.97438 * 23 22 21 37 37 H 1.08998 * 109.49686 * 178.67995 * 24 15 14 38 38 H 1.09006 * 109.52432 * 58.60089 * 24 15 14 39 39 H 1.08997 * 109.58689 * 246.15965 * 25 12 9 40 40 H 1.08998 * 109.58450 * 6.44081 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1683 -0.6498 -1.2485 11 8 4.1672 -0.6494 1.2510 12 7 4.2567 -2.7759 0.0011 13 6 4.4837 -3.4892 1.2653 14 6 5.8872 -4.0921 1.2513 15 6 6.0554 -4.9587 0.0012 16 6 7.3970 -5.5644 0.0016 17 6 8.4671 -6.0475 0.0027 18 6 9.7722 -6.6367 0.0012 19 6 10.8916 -5.8607 0.3041 20 6 12.1459 -6.4355 0.3050 21 6 12.2961 -7.7758 -0.0028 22 6 11.1908 -8.5495 -0.3091 23 6 9.9305 -7.9880 -0.3088 24 6 5.8877 -4.0918 -1.2489 25 6 4.4788 -3.4907 -1.2632 26 1 -0.4850 0.8400 -0.0004 27 1 4.3949 -2.7928 2.0990 28 1 3.7477 -4.2863 1.3724 29 1 6.0299 -4.7055 2.1411 30 1 6.6250 -3.2898 1.2399 31 1 5.3016 -5.7460 0.0009 32 1 10.7761 -4.8133 0.5409 33 1 13.0128 -5.8369 0.5433 34 1 13.2805 -8.2201 -0.0043 35 1 11.3148 -9.5952 -0.5489 36 1 9.0686 -8.5929 -0.5485 37 1 6.0308 -4.7049 -2.1386 38 1 6.6255 -3.2894 -1.2374 39 1 3.7425 -4.2877 -1.3666 40 1 4.3843 -2.7955 -2.0974 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192965752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:04 Heat of formation + Delta-G solvation = -14.352497 kcal Electronic energy + Delta-G solvation = -23308.058541 eV Core-core repulsion = 19794.291654 eV Total energy + Delta-G solvation = -3513.766888 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.38292 -38.49765 -35.72217 -34.48267 -34.40849 -33.02880 -32.37142 -31.25011 -30.87950 -29.63857 -26.38658 -24.86520 -23.10327 -22.90481 -22.78981 -20.44048 -18.80628 -18.36830 -17.40202 -16.87887 -16.39811 -15.49980 -15.28146 -15.18198 -15.06746 -14.25960 -14.08136 -14.01471 -13.83149 -13.74231 -13.59121 -13.28659 -13.22770 -12.79890 -12.22411 -12.01977 -11.71607 -11.61477 -11.41464 -11.37066 -11.26597 -11.07507 -10.88859 -10.68208 -10.60130 -10.47435 -10.24668 -9.89038 -9.79038 -9.27742 -9.21147 -9.13752 -8.63572 -8.30380 -6.80469 -5.33861 0.68943 1.08480 1.99364 2.56230 2.77766 3.06849 3.17341 3.26509 3.74975 3.90040 3.95015 4.14933 4.58595 4.64624 4.64940 4.78539 4.89418 4.98240 4.99289 5.12425 5.26549 5.31918 5.35762 5.42273 5.55322 5.56718 5.71201 5.73112 5.84061 5.86065 5.96447 6.00766 6.10125 6.17050 6.17779 6.19813 6.23408 6.27065 6.44940 6.63716 6.64569 7.34910 7.47922 7.48537 8.22119 8.70768 10.31945 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.002483 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.465800 B =11274.103471 C =11532.266365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.152 3.848 3 Si 0.801 3.199 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.219 1.219 7 C -1.014 5.014 8 H 0.121 0.879 9 S 2.676 3.324 10 O -1.009 7.009 11 O -1.006 7.006 12 N -1.002 6.002 13 C 0.124 3.876 14 C -0.124 4.124 15 C 0.023 3.977 16 C -0.122 4.122 17 C -0.170 4.170 18 C 0.028 3.972 19 C -0.100 4.100 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.101 4.101 24 C -0.123 4.123 25 C 0.124 3.876 26 H 0.280 0.720 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.960 -15.360 0.078 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.139 0.861 9 S 2.779 3.221 10 O -0.999 6.999 11 O -0.996 6.996 12 N -0.838 5.838 13 C -0.002 4.002 14 C -0.163 4.163 15 C 0.005 3.995 16 C -0.122 4.122 17 C -0.170 4.170 18 C 0.028 3.972 19 C -0.118 4.118 20 C -0.137 4.137 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.119 4.119 24 C -0.162 4.162 25 C -0.002 4.002 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.367 -14.538 0.083 23.424 hybrid contribution -0.462 0.349 -0.019 0.579 sum 17.905 -14.190 0.064 22.846 Atomic orbital electron populations 1.69987 1.06589 1.29015 1.39681 1.24446 0.94792 0.98827 0.88671 0.87873 0.83620 0.84569 0.81830 1.17042 1.17926 1.14150 1.30539 1.15704 1.02091 1.66553 0.86098 1.01419 0.77224 0.70260 0.73198 1.93392 1.85321 1.75789 1.45391 1.93446 1.85350 1.75637 1.45207 1.57699 1.84271 1.31709 1.10157 1.21206 0.94976 0.97364 0.86691 1.21877 0.98787 0.99178 0.96425 1.18395 0.87350 0.96753 0.96982 1.22446 0.94337 0.97246 0.98196 1.19068 0.93032 1.01616 1.03322 1.15903 0.87731 0.92854 1.00725 1.21293 0.91645 0.99974 0.98857 1.21102 0.97079 0.95328 1.00164 1.21259 0.98861 0.94195 0.99280 1.21087 0.92296 1.00068 1.00323 1.21250 0.97785 0.93739 0.99103 1.21945 0.98721 0.99181 0.96386 1.21293 0.94921 0.97353 0.86679 0.90925 0.88313 0.91688 0.90612 0.91043 0.88413 0.85546 0.85577 0.85862 0.85627 0.85652 0.90650 0.91016 0.91664 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.73 13.96 55.43 0.77 -22.95 16 2 C 0.15 4.35 5.47 -17.82 -0.10 4.26 16 3 Si 0.80 20.53 26.54 -169.99 -4.51 16.02 16 4 H -0.25 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.22 -5.71 5.61 56.52 0.32 -5.39 16 7 C -1.01 -28.01 10.29 30.60 0.31 -27.70 16 8 H 0.12 3.38 8.06 -52.49 -0.42 2.95 16 9 S 2.68 65.82 4.23 -107.50 -0.45 65.37 16 10 O -1.01 -26.39 15.42 -57.17 -0.88 -27.27 16 11 O -1.01 -26.39 14.60 -57.17 -0.84 -27.22 16 12 N -1.00 -18.92 3.30 -113.77 -0.37 -19.30 16 13 C 0.12 1.95 6.45 -3.93 -0.03 1.92 16 14 C -0.12 -1.65 5.30 -26.83 -0.14 -1.79 16 15 C 0.02 0.29 2.53 -93.36 -0.24 0.06 16 16 C -0.12 -1.60 12.56 -37.12 -0.47 -2.07 16 17 C -0.17 -2.22 13.24 -38.84 -0.51 -2.73 16 18 C 0.03 0.32 5.72 -107.01 -0.61 -0.29 16 19 C -0.10 -1.01 9.75 -39.19 -0.38 -1.39 16 20 C -0.12 -0.97 10.03 -39.64 -0.40 -1.36 16 21 C -0.12 -0.87 10.04 -39.50 -0.40 -1.27 16 22 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 23 C -0.10 -0.96 9.75 -39.20 -0.38 -1.35 16 24 C -0.12 -1.65 5.32 -26.61 -0.14 -1.79 16 25 C 0.12 1.95 6.48 -3.71 -0.02 1.93 16 26 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.10 1.66 6.91 -51.93 -0.36 1.31 16 28 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 35 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.67 6.92 -51.93 -0.36 1.31 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -33.06 348.29 -10.37 -43.44 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.43 Total: 1.57 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: -3.90 Total: -34.90 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.40 Total: -42.25 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -1.72 Total: -54.49 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.51 Total: 16.02 kcal Atomic # 16 Polarization: 65.82 SS G_CDS: -0.45 Total: 65.37 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.06 -10.37 -43.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.083 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds