Wall clock time and date at job start Tue Mar 31 2020 13:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48501 * 109.47295 * 269.99551 * 3 2 1 5 5 H 1.48505 * 109.47129 * 29.99704 * 3 2 1 6 6 H 1.48504 * 109.47322 * 149.99801 * 3 2 1 7 7 C 1.37881 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99334 * 0.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 180.02562 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62553 * 269.71992 * 12 9 7 14 14 C 1.52760 * 109.00861 * 233.58205 * 13 12 9 15 15 C 1.53046 * 109.38256 * 305.58983 * 14 13 12 16 16 C 1.47203 * 109.44723 * 181.25356 * 15 14 13 17 17 C 9.36609 * 139.78330 * 179.97438 * 2 1 3 18 18 C 9.48468 * 155.02150 * 179.97438 * 7 2 1 19 19 C 1.39538 * 120.13976 * 194.57294 * 18 17 16 20 20 C 1.37976 * 119.85317 * 179.79259 * 19 18 17 21 21 C 1.38339 * 120.14212 * 0.46502 * 20 19 18 22 22 C 1.38347 * 120.28812 * 359.78701 * 21 20 19 23 23 C 1.37974 * 120.14045 * 359.97438 * 22 21 20 24 24 C 1.53042 * 109.53591 * 61.23964 * 15 14 13 25 25 C 1.46921 * 120.63289 * 89.99915 * 12 9 7 26 26 H 0.96999 * 119.99997 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.59343 * 353.42265 * 13 12 9 28 28 H 1.09010 * 109.58634 * 113.84364 * 13 12 9 29 29 H 1.09006 * 109.56563 * 185.55777 * 14 13 12 30 30 H 1.09001 * 109.35973 * 65.50306 * 14 13 12 31 31 H 1.08998 * 109.46354 * 301.21868 * 15 14 13 32 32 H 1.07999 * 120.07276 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.92675 * 180.25190 * 20 19 18 34 34 H 1.08003 * 119.85496 * 179.76495 * 21 20 19 35 35 H 1.08005 * 119.92566 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.06570 * 179.97438 * 23 22 21 37 37 H 1.08998 * 109.49686 * 178.67995 * 24 15 14 38 38 H 1.09006 * 109.52432 * 58.60089 * 24 15 14 39 39 H 1.08997 * 109.58689 * 246.15965 * 25 12 9 40 40 H 1.08998 * 109.58450 * 6.44081 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 16 3.7665 -1.1940 0.0012 10 8 4.1683 -0.6498 -1.2485 11 8 4.1672 -0.6494 1.2510 12 7 4.2567 -2.7759 0.0011 13 6 4.4837 -3.4892 1.2653 14 6 5.8872 -4.0921 1.2513 15 6 6.0554 -4.9587 0.0012 16 6 7.3970 -5.5644 0.0016 17 6 8.4671 -6.0475 0.0027 18 6 9.7722 -6.6367 0.0012 19 6 10.8916 -5.8607 0.3041 20 6 12.1459 -6.4355 0.3050 21 6 12.2961 -7.7758 -0.0028 22 6 11.1908 -8.5495 -0.3091 23 6 9.9305 -7.9880 -0.3088 24 6 5.8877 -4.0918 -1.2489 25 6 4.4788 -3.4907 -1.2632 26 1 -0.4850 0.8400 -0.0004 27 1 4.3949 -2.7928 2.0990 28 1 3.7477 -4.2863 1.3724 29 1 6.0299 -4.7055 2.1411 30 1 6.6250 -3.2898 1.2399 31 1 5.3016 -5.7460 0.0009 32 1 10.7761 -4.8133 0.5409 33 1 13.0128 -5.8369 0.5433 34 1 13.2805 -8.2201 -0.0043 35 1 11.3148 -9.5952 -0.5489 36 1 9.0686 -8.5929 -0.5485 37 1 6.0308 -4.7049 -2.1386 38 1 6.6255 -3.2894 -1.2374 39 1 3.7425 -4.2877 -1.3666 40 1 4.3843 -2.7955 -2.0974 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192965752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:02 Heat of formation + Delta-G solvation = -34.648046 kcal Electronic energy + Delta-G solvation = -23308.938622 eV Core-core repulsion = 19794.291654 eV Total energy + Delta-G solvation = -3514.646969 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.05239 -39.66793 -37.74348 -36.47870 -35.50986 -35.16641 -33.35891 -32.07503 -31.88287 -30.53674 -28.53515 -25.99774 -24.29579 -23.70917 -23.42647 -21.69144 -20.69413 -19.35990 -19.02647 -18.64268 -17.37358 -17.04532 -16.78721 -16.19317 -15.94768 -15.69626 -15.43573 -15.30966 -15.08995 -14.95388 -14.78922 -14.62610 -14.34961 -14.09290 -13.66654 -13.51634 -13.33607 -12.99348 -12.67831 -12.61942 -12.57154 -12.34678 -12.27300 -12.17374 -12.12743 -11.92825 -11.63337 -11.35762 -11.31817 -11.15270 -10.84179 -9.91949 -9.81227 -9.39494 -8.96515 -7.51137 -0.03556 0.11309 0.44423 1.04041 1.13207 1.20816 1.61627 1.88460 1.94607 2.41443 2.45122 3.00174 3.02629 3.40719 3.75520 3.84396 4.00355 4.05781 4.06759 4.10500 4.24504 4.28833 4.29277 4.43182 4.43407 4.53992 4.64038 4.78035 4.79536 4.84908 4.86197 4.99340 5.10285 5.11652 5.13131 5.26026 5.35450 5.41873 5.49375 5.54751 5.56092 5.89436 6.02134 6.03218 6.53839 6.54534 8.21129 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.035960 B = 0.002483 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.465800 B =11274.103471 C =11532.266365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.107 3.893 3 Si 0.823 3.177 4 H -0.240 1.240 5 H -0.220 1.220 6 H -0.229 1.229 7 C -1.034 5.034 8 H 0.107 0.893 9 S 2.694 3.306 10 O -1.028 7.028 11 O -1.026 7.026 12 N -1.000 6.000 13 C 0.115 3.885 14 C -0.118 4.118 15 C 0.030 3.970 16 C -0.143 4.143 17 C -0.173 4.173 18 C -0.007 4.007 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.109 4.109 24 C -0.117 4.117 25 C 0.114 3.886 26 H 0.291 0.709 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.962 -17.235 0.060 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.110 4.110 3 Si 0.641 3.359 4 H -0.164 1.164 5 H -0.143 1.143 6 H -0.152 1.152 7 C -1.167 5.167 8 H 0.125 0.875 9 S 2.796 3.204 10 O -1.018 7.018 11 O -1.016 7.016 12 N -0.840 5.840 13 C -0.010 4.010 14 C -0.157 4.157 15 C 0.012 3.988 16 C -0.143 4.143 17 C -0.173 4.173 18 C -0.007 4.007 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.127 4.127 24 C -0.157 4.157 25 C -0.010 4.010 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.150 0.850 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 20.335 -16.398 0.069 26.123 hybrid contribution -0.974 0.764 -0.019 1.238 sum 19.361 -15.634 0.050 24.885 Atomic orbital electron populations 1.70010 1.07406 1.30396 1.40615 1.25174 0.95628 1.01434 0.88729 0.87514 0.82916 0.82986 0.82520 1.16365 1.14259 1.15157 1.31066 1.18114 1.01516 1.65961 0.87529 1.00646 0.75724 0.71800 0.72263 1.93356 1.84986 1.77410 1.46064 1.93410 1.85018 1.77287 1.45917 1.57358 1.83695 1.30303 1.12598 1.21498 0.97415 0.97469 0.84628 1.21829 0.96499 0.99145 0.98217 1.18347 0.87857 0.96861 0.95728 1.22517 0.94645 0.97677 0.99448 1.19630 0.93560 1.01544 1.02573 1.16169 0.87451 0.94039 1.03085 1.21422 0.92372 1.00004 0.99535 1.21413 0.96927 0.96139 0.99539 1.21681 1.00179 0.93798 0.97446 1.21450 0.91599 1.01445 0.99323 1.21438 0.99052 0.93139 0.99088 1.21897 0.96419 0.99143 0.98194 1.21588 0.97366 0.97462 0.84614 0.89897 0.89838 0.88972 0.88161 0.92578 0.86152 0.85936 0.83407 0.82889 0.82953 0.85038 0.88191 0.92580 0.88939 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.65 13.96 21.45 0.30 -49.35 16 2 C 0.11 6.18 5.47 84.66 0.46 6.64 16 3 Si 0.82 41.46 26.54 68.60 1.82 43.28 16 4 H -0.24 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.22 -9.79 7.11 99.48 0.71 -9.08 16 6 H -0.23 -11.86 5.61 99.48 0.56 -11.30 16 7 C -1.03 -58.10 10.29 67.74 0.70 -57.41 16 8 H 0.11 6.10 8.06 -2.91 -0.02 6.08 16 9 S 2.69 133.82 4.23 -56.49 -0.24 133.58 16 10 O -1.03 -54.31 15.42 -128.00 -1.97 -56.29 16 11 O -1.03 -54.41 14.60 -128.00 -1.87 -56.28 16 12 N -1.00 -37.36 3.30 -513.86 -1.69 -39.05 16 13 C 0.11 3.50 6.45 86.22 0.56 4.06 16 14 C -0.12 -2.98 5.30 30.53 0.16 -2.82 16 15 C 0.03 0.69 2.53 -12.57 -0.03 0.66 16 16 C -0.14 -3.58 12.56 31.13 0.39 -3.19 16 17 C -0.17 -4.42 13.24 30.01 0.40 -4.02 16 18 C -0.01 -0.16 5.72 -21.41 -0.12 -0.29 16 19 C -0.12 -2.25 9.75 22.52 0.22 -2.03 16 20 C -0.12 -1.74 10.03 22.23 0.22 -1.52 16 21 C -0.11 -1.33 10.04 22.32 0.22 -1.10 16 22 C -0.12 -1.55 10.03 22.23 0.22 -1.33 16 23 C -0.11 -1.93 9.75 22.52 0.22 -1.71 16 24 C -0.12 -2.98 5.32 30.67 0.16 -2.82 16 25 C 0.11 3.49 6.48 86.36 0.56 4.05 16 26 H 0.29 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.08 2.81 6.91 -2.39 -0.02 2.79 16 28 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.12 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.08 2.81 6.92 -2.39 -0.02 2.79 16 Total: -1.00 -72.19 348.29 1.58 -70.61 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.89 Total: 16.31 kcal Atomic # 6 Polarization: -67.16 SS G_CDS: 4.34 Total: -62.82 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -1.39 Total: -88.40 kcal Atomic # 8 Polarization: -108.72 SS G_CDS: -3.84 Total: -112.56 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.82 Total: 43.28 kcal Atomic # 16 Polarization: 133.82 SS G_CDS: -0.24 Total: 133.58 kcal Total: -72.19 1.58 -70.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.963 kcal (2) G-P(sol) polarization free energy of solvation -72.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds