Wall clock time and date at job start Tue Mar 31 2020 12:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47562 * 2 1 4 4 C 1.53009 * 109.47361 * 120.00113 * 2 1 3 5 5 C 1.52995 * 109.46669 * 294.99865 * 4 2 1 6 6 Br 1.96603 * 109.46913 * 179.97438 * 5 4 2 7 7 C 1.53009 * 109.47320 * 239.99935 * 2 1 3 8 8 C 1.53002 * 109.46639 * 65.00076 * 7 2 1 9 9 O 1.42901 * 109.46785 * 180.02562 * 8 7 2 10 10 C 1.42894 * 113.99994 * 179.97438 * 9 8 7 11 11 H 1.09006 * 110.77922 * 31.78397 * 10 9 8 12 12 C 1.55157 * 110.72003 * 155.01830 * 10 9 8 13 13 C 1.54911 * 101.58099 * 153.86564 * 12 10 9 14 14 N 1.47422 * 104.83149 * 322.99310 * 13 12 10 15 15 C 1.36938 * 125.64771 * 204.09077 * 14 13 12 16 16 H 1.08000 * 120.00398 * 169.98025 * 15 14 13 17 17 C 1.38816 * 120.00207 * 349.98872 * 15 14 13 18 18 N 1.31624 * 119.99580 * 350.41769 * 17 15 14 19 19 Si 1.86797 * 120.00252 * 170.41912 * 17 15 14 20 20 H 1.48500 * 109.47032 * 94.13825 * 19 17 15 21 21 H 1.48500 * 109.47027 * 214.13643 * 19 17 15 22 22 H 1.48502 * 109.47194 * 334.13957 * 19 17 15 23 23 C 1.47014 * 108.70602 * 24.12875 * 14 13 12 24 24 H 1.09001 * 109.46870 * 299.99846 * 1 2 3 25 25 H 1.09003 * 109.47024 * 60.00006 * 1 2 3 26 26 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46694 * 54.99761 * 4 2 1 28 28 H 1.08998 * 109.47067 * 174.99718 * 4 2 1 29 29 H 1.08997 * 109.47477 * 299.99416 * 5 4 2 30 30 H 1.09004 * 109.47152 * 60.00304 * 5 4 2 31 31 H 1.09003 * 109.46873 * 305.00491 * 7 2 1 32 32 H 1.08996 * 109.47073 * 185.00338 * 7 2 1 33 33 H 1.08995 * 109.47406 * 60.00452 * 8 7 2 34 34 H 1.08996 * 109.46861 * 300.00000 * 8 7 2 35 35 H 1.09000 * 111.00924 * 271.94029 * 12 10 9 36 36 H 1.09001 * 111.00657 * 35.79540 * 12 10 9 37 37 H 1.09000 * 110.36744 * 204.15070 * 13 12 10 38 38 H 1.09005 * 110.45930 * 81.87982 * 13 12 10 39 39 H 0.97003 * 119.99654 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.88256 * 239.52448 * 23 14 13 41 41 H 1.08997 * 110.01507 * 118.43023 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6353 0.0689 2.4953 6 35 2.2900 -0.8583 4.1006 7 6 2.0400 -0.7213 -1.2493 8 6 1.6353 0.0690 -2.4953 9 8 2.1111 -0.6050 -3.6621 10 6 1.7842 0.0534 -4.8875 11 1 1.7504 1.1341 -4.7489 12 6 2.7958 -0.3257 -6.0012 13 6 1.9432 -0.1216 -7.2784 14 7 0.5906 -0.5739 -6.9054 15 6 -0.3701 -1.0187 -7.7741 16 1 -1.2700 -1.4794 -7.3943 17 6 -0.1871 -0.8775 -9.1429 18 7 0.8114 -0.1532 -9.6021 19 14 -1.3579 -1.7155 -10.3330 20 1 -2.4339 -0.7675 -10.7189 21 1 -0.6123 -2.1382 -11.5457 22 1 -1.9582 -2.9068 -9.6806 23 6 0.4434 -0.4676 -5.4465 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2056 29 1 2.0700 1.0674 2.4494 30 1 0.5489 0.1471 2.5390 31 1 1.6053 -1.7198 -1.2952 32 1 3.1263 -0.7995 -1.2056 33 1 2.0699 1.0675 -2.4494 34 1 0.5490 0.1472 -2.5389 35 1 3.6549 0.3451 -5.9937 36 1 3.1122 -1.3643 -5.9046 37 1 2.3338 -0.7274 -8.0961 38 1 1.9267 0.9309 -7.5613 39 1 0.9395 -0.0549 -10.5586 40 1 0.2214 -1.4475 -5.0239 41 1 -0.3566 0.2312 -5.2022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225035276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:00 Heat of formation + Delta-G solvation = -46.957993 kcal Electronic energy + Delta-G solvation = -19070.550600 eV Core-core repulsion = 16031.589520 eV Total energy + Delta-G solvation = -3038.961080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.63585 -37.47721 -35.72607 -32.69936 -32.00954 -29.79373 -29.03462 -28.02118 -26.98153 -25.07106 -24.17294 -22.00627 -20.49295 -20.16252 -19.92312 -16.93622 -16.61582 -15.96550 -15.26939 -14.82843 -14.77089 -14.54991 -13.91335 -13.80254 -13.48968 -13.04678 -12.54516 -12.44443 -12.37823 -11.95639 -11.81285 -11.66804 -11.40487 -11.23495 -11.06573 -10.84978 -10.83437 -10.73270 -10.63501 -10.31493 -10.17732 -10.09733 -10.07994 -9.77623 -9.66156 -9.06345 -8.58480 -6.79877 -5.74400 -3.06979 1.34726 3.40093 3.45701 3.48237 3.80744 4.34646 4.36885 4.51556 4.58797 4.69644 4.94705 5.03818 5.14769 5.29881 5.33908 5.40460 5.44016 5.50501 5.51470 5.53823 5.61054 5.71006 5.75665 5.82411 5.86389 5.90814 6.13407 6.15556 6.33872 6.53425 6.57312 6.65934 6.74071 7.49394 7.56431 7.66941 7.79609 8.26322 9.19562 9.81418 10.48834 11.38903 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.045594 B = 0.001860 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.968922 B =15052.939128 C =15401.111624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.087 4.087 3 H 0.074 0.926 4 C -0.115 4.115 5 C -0.076 4.076 6 Br -0.172 7.172 7 C -0.112 4.112 8 C 0.060 3.940 9 O -0.379 6.379 10 C 0.077 3.923 11 H 0.062 0.938 12 C -0.139 4.139 13 C 0.173 3.827 14 N -0.601 5.601 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.919 5.919 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.117 3.883 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.253 0.747 40 H 0.032 0.968 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 1.904 27.554 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.192 4.192 6 Br -0.091 7.091 7 C -0.150 4.150 8 C -0.017 4.017 9 O -0.298 6.298 10 C 0.020 3.980 11 H 0.080 0.920 12 C -0.178 4.178 13 C 0.048 3.952 14 N -0.328 5.328 15 C -0.356 4.356 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.567 5.567 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.009 4.009 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.262 1.411 27.899 28.258 hybrid contribution -0.969 0.177 -0.989 1.396 sum 3.292 1.588 26.910 27.157 Atomic orbital electron populations 1.22013 0.94837 1.02514 1.02017 1.21097 0.96262 0.99829 0.93505 0.90731 1.21847 1.02307 0.99535 0.91658 1.24882 1.04116 1.00457 0.89716 1.97402 1.90098 1.80549 1.41087 1.21526 1.01774 0.99841 0.91836 1.22504 0.98281 0.95096 0.85779 1.87901 1.77950 1.50535 1.13437 1.23188 0.96380 0.95039 0.83439 0.91971 1.23129 0.97207 1.01469 0.95968 1.21420 0.83171 0.98397 0.92187 1.44371 1.11825 1.76706 0.99934 1.19031 0.98536 1.31353 0.86706 0.90630 1.24836 0.98842 0.99944 0.96877 1.69954 1.32147 1.42011 1.12554 0.86107 0.79836 0.79119 0.80726 1.21617 1.21565 1.20575 1.21715 0.94285 0.97957 0.86988 0.92708 0.91862 0.92144 0.90432 0.90496 0.88304 0.88020 0.90885 0.91080 0.93899 0.93260 0.91877 0.91166 0.90898 0.95388 0.93677 0.94971 0.96296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.70 37.16 0.32 -0.82 16 2 C -0.09 -0.64 2.39 -90.61 -0.22 -0.86 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.12 -0.75 4.74 -26.73 -0.13 -0.88 16 5 C -0.08 -0.44 6.36 37.15 0.24 -0.20 16 6 Br -0.17 -1.34 33.93 -68.01 -2.31 -3.65 16 7 C -0.11 -1.12 5.05 -26.73 -0.14 -1.25 16 8 C 0.06 0.76 5.57 37.16 0.21 0.97 16 9 O -0.38 -6.42 10.07 -35.23 -0.35 -6.77 16 10 C 0.08 1.45 3.40 -24.90 -0.08 1.36 16 11 H 0.06 1.08 7.89 -51.93 -0.41 0.67 16 12 C -0.14 -2.76 6.81 -24.58 -0.17 -2.92 16 13 C 0.17 4.28 5.42 -2.53 -0.01 4.27 16 14 N -0.60 -15.94 3.39 -170.08 -0.58 -16.52 16 15 C -0.23 -6.52 10.24 -15.06 -0.15 -6.67 16 16 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 17 C -0.01 -0.24 5.40 -17.43 -0.09 -0.34 16 18 N -0.92 -27.25 10.68 55.49 0.59 -26.66 16 19 Si 0.91 22.26 29.56 -169.99 -5.03 17.24 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.12 2.58 7.02 -3.07 -0.02 2.56 16 24 H 0.05 0.32 6.56 -51.93 -0.34 -0.02 16 25 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.52 6.57 -51.93 -0.34 0.18 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.50 8.11 -51.93 -0.42 0.08 16 34 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.98 6.94 -51.93 -0.36 1.62 16 38 H 0.03 0.73 8.07 -51.93 -0.42 0.32 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -30.78 342.95 -9.92 -40.70 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -7.17 Total: -4.72 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.25 Total: -4.79 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.02 Total: -43.18 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.35 Total: -6.77 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.24 kcal Atomic # 35 Polarization: -1.34 SS G_CDS: -2.31 Total: -3.65 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.78 -9.92 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225035276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.260 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds