Wall clock time and date at job start Tue Mar 31 2020 12:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47562 * 2 1 4 4 C 1.53009 * 109.47361 * 120.00113 * 2 1 3 5 5 C 1.52995 * 109.46669 * 294.99865 * 4 2 1 6 6 Br 1.96603 * 109.46913 * 179.97438 * 5 4 2 7 7 C 1.53009 * 109.47320 * 239.99935 * 2 1 3 8 8 C 1.53002 * 109.46639 * 65.00076 * 7 2 1 9 9 O 1.42901 * 109.46785 * 180.02562 * 8 7 2 10 10 C 1.42894 * 113.99994 * 179.97438 * 9 8 7 11 11 H 1.09006 * 110.77922 * 31.78397 * 10 9 8 12 12 C 1.55157 * 110.72003 * 155.01830 * 10 9 8 13 13 C 1.54911 * 101.58099 * 153.86564 * 12 10 9 14 14 N 1.47422 * 104.83149 * 322.99310 * 13 12 10 15 15 C 1.36938 * 125.64771 * 204.09077 * 14 13 12 16 16 H 1.08000 * 120.00398 * 169.98025 * 15 14 13 17 17 C 1.38816 * 120.00207 * 349.98872 * 15 14 13 18 18 N 1.31624 * 119.99580 * 350.41769 * 17 15 14 19 19 Si 1.86797 * 120.00252 * 170.41912 * 17 15 14 20 20 H 1.48500 * 109.47032 * 94.13825 * 19 17 15 21 21 H 1.48500 * 109.47027 * 214.13643 * 19 17 15 22 22 H 1.48502 * 109.47194 * 334.13957 * 19 17 15 23 23 C 1.47014 * 108.70602 * 24.12875 * 14 13 12 24 24 H 1.09001 * 109.46870 * 299.99846 * 1 2 3 25 25 H 1.09003 * 109.47024 * 60.00006 * 1 2 3 26 26 H 1.09001 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46694 * 54.99761 * 4 2 1 28 28 H 1.08998 * 109.47067 * 174.99718 * 4 2 1 29 29 H 1.08997 * 109.47477 * 299.99416 * 5 4 2 30 30 H 1.09004 * 109.47152 * 60.00304 * 5 4 2 31 31 H 1.09003 * 109.46873 * 305.00491 * 7 2 1 32 32 H 1.08996 * 109.47073 * 185.00338 * 7 2 1 33 33 H 1.08995 * 109.47406 * 60.00452 * 8 7 2 34 34 H 1.08996 * 109.46861 * 300.00000 * 8 7 2 35 35 H 1.09000 * 111.00924 * 271.94029 * 12 10 9 36 36 H 1.09001 * 111.00657 * 35.79540 * 12 10 9 37 37 H 1.09000 * 110.36744 * 204.15070 * 13 12 10 38 38 H 1.09005 * 110.45930 * 81.87982 * 13 12 10 39 39 H 0.97003 * 119.99654 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.88256 * 239.52448 * 23 14 13 41 41 H 1.08997 * 110.01507 * 118.43023 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6353 0.0689 2.4953 6 35 2.2900 -0.8583 4.1006 7 6 2.0400 -0.7213 -1.2493 8 6 1.6353 0.0690 -2.4953 9 8 2.1111 -0.6050 -3.6621 10 6 1.7842 0.0534 -4.8875 11 1 1.7504 1.1341 -4.7489 12 6 2.7958 -0.3257 -6.0012 13 6 1.9432 -0.1216 -7.2784 14 7 0.5906 -0.5739 -6.9054 15 6 -0.3701 -1.0187 -7.7741 16 1 -1.2700 -1.4794 -7.3943 17 6 -0.1871 -0.8775 -9.1429 18 7 0.8114 -0.1532 -9.6021 19 14 -1.3579 -1.7155 -10.3330 20 1 -2.4339 -0.7675 -10.7189 21 1 -0.6123 -2.1382 -11.5457 22 1 -1.9582 -2.9068 -9.6806 23 6 0.4434 -0.4676 -5.4465 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2056 29 1 2.0700 1.0674 2.4494 30 1 0.5489 0.1471 2.5390 31 1 1.6053 -1.7198 -1.2952 32 1 3.1263 -0.7995 -1.2056 33 1 2.0699 1.0675 -2.4494 34 1 0.5490 0.1472 -2.5389 35 1 3.6549 0.3451 -5.9937 36 1 3.1122 -1.3643 -5.9046 37 1 2.3338 -0.7274 -8.0961 38 1 1.9267 0.9309 -7.5613 39 1 0.9395 -0.0549 -10.5586 40 1 0.2214 -1.4475 -5.0239 41 1 -0.3566 0.2312 -5.2022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225035276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:59 Heat of formation + Delta-G solvation = -63.770362 kcal Electronic energy + Delta-G solvation = -19071.279639 eV Core-core repulsion = 16031.589520 eV Total energy + Delta-G solvation = -3039.690119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.99713 -38.46201 -37.15847 -34.27996 -33.09740 -31.19857 -30.27692 -28.96287 -28.41904 -26.42970 -25.53828 -22.80029 -22.06687 -21.82890 -20.79659 -18.94524 -17.97039 -16.78309 -16.70198 -16.28976 -15.94111 -15.80175 -15.20443 -14.82045 -14.46627 -14.34419 -14.14950 -13.61559 -13.47499 -13.21224 -13.05521 -12.79690 -12.71273 -12.64675 -12.46514 -12.19310 -12.01290 -11.99908 -11.80127 -11.75362 -11.49654 -11.44224 -11.37539 -10.72927 -10.71184 -10.67908 -10.40745 -8.90523 -7.91039 -5.26593 0.86927 1.45357 1.47364 1.57260 2.45876 2.67303 3.28841 3.66826 3.75594 3.82283 3.84569 3.94707 4.03670 4.12297 4.18122 4.34786 4.40716 4.48822 4.55108 4.62631 4.63741 4.71967 4.80101 4.92090 4.95212 4.98891 5.02560 5.04410 5.13739 5.15322 5.20976 5.41462 5.44605 5.50906 5.55648 5.67373 6.16751 6.37999 7.04835 7.71695 8.38133 9.21123 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.045594 B = 0.001860 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.968922 B =15052.939128 C =15401.111624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.078 4.078 3 H 0.087 0.913 4 C -0.111 4.111 5 C -0.069 4.069 6 Br -0.192 7.192 7 C -0.107 4.107 8 C 0.052 3.948 9 O -0.390 6.390 10 C 0.095 3.905 11 H 0.082 0.918 12 C -0.126 4.126 13 C 0.178 3.822 14 N -0.625 5.625 15 C -0.249 4.249 16 H 0.077 0.923 17 C -0.063 4.063 18 N -0.947 5.947 19 Si 0.981 3.019 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.270 1.270 23 C 0.113 3.887 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.007 0.993 39 H 0.250 0.750 40 H 0.026 0.974 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 2.325 29.013 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.098 4.098 3 H 0.105 0.895 4 C -0.149 4.149 5 C -0.184 4.184 6 Br -0.113 7.113 7 C -0.145 4.145 8 C -0.024 4.024 9 O -0.309 6.309 10 C 0.036 3.964 11 H 0.099 0.901 12 C -0.164 4.164 13 C 0.053 3.947 14 N -0.352 5.352 15 C -0.378 4.378 16 H 0.095 0.905 17 C -0.257 4.257 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.195 1.195 23 C -0.013 4.013 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.117 1.830 29.397 29.741 hybrid contribution -0.948 0.056 -1.395 1.687 sum 3.169 1.886 28.003 28.244 Atomic orbital electron populations 1.22027 0.94794 1.02274 1.02419 1.21019 0.96172 1.00164 0.92403 0.89479 1.21772 1.02204 0.99303 0.91595 1.24933 1.04747 1.00558 0.88200 1.97410 1.90353 1.81095 1.42395 1.21515 1.01876 0.99303 0.91794 1.22813 0.98495 0.96135 0.84985 1.87886 1.77993 1.51270 1.13787 1.22897 0.93597 0.95862 0.84018 0.90054 1.22956 0.97585 1.02129 0.93741 1.21222 0.83525 0.96242 0.93721 1.44691 1.12178 1.76673 1.01672 1.19394 0.99164 1.31543 0.87656 0.90515 1.25709 1.00748 1.00725 0.98487 1.70143 1.33758 1.43112 1.12543 0.85042 0.77729 0.78272 0.78114 1.21025 1.21648 1.19500 1.21871 0.96703 0.97868 0.84824 0.90990 0.92794 0.92755 0.90988 0.90553 0.86935 0.87034 0.91908 0.90921 0.92218 0.93240 0.88770 0.91520 0.94298 0.97499 0.94045 0.95608 0.95898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.70 71.98 0.63 -1.35 16 2 C -0.08 -0.95 2.39 -10.79 -0.03 -0.97 16 3 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.11 -1.20 4.74 30.60 0.15 -1.05 16 5 C -0.07 -0.63 6.36 71.98 0.46 -0.18 16 6 Br -0.19 -2.73 33.93 -20.37 -0.69 -3.42 16 7 C -0.11 -1.92 5.05 30.60 0.15 -1.77 16 8 C 0.05 1.19 5.57 71.98 0.40 1.59 16 9 O -0.39 -12.44 10.07 -148.98 -1.50 -13.94 16 10 C 0.09 3.38 3.40 31.78 0.11 3.49 16 11 H 0.08 2.62 7.89 -2.38 -0.02 2.60 16 12 C -0.13 -4.84 6.81 31.99 0.22 -4.62 16 13 C 0.18 8.95 5.42 86.86 0.47 9.42 16 14 N -0.62 -33.57 3.39 -692.00 -2.35 -35.91 16 15 C -0.25 -14.41 10.24 84.03 0.86 -13.55 16 16 H 0.08 4.29 7.85 -2.91 -0.02 4.27 16 17 C -0.06 -3.66 5.40 84.86 0.46 -3.20 16 18 N -0.95 -57.41 10.68 21.65 0.23 -57.18 16 19 Si 0.98 46.16 29.56 68.60 2.03 48.19 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.11 4.94 7.02 86.73 0.61 5.55 16 24 H 0.07 0.65 6.56 -2.39 -0.02 0.63 16 25 H 0.05 0.78 6.57 -2.39 -0.02 0.77 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 0.82 6.57 -2.38 -0.02 0.81 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.20 8.11 -2.39 -0.02 1.18 16 34 H 0.05 1.15 6.56 -2.39 -0.02 1.13 16 35 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.04 2.18 6.94 -2.39 -0.02 2.17 16 38 H 0.01 0.38 8.07 -2.38 -0.02 0.36 16 39 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.03 1.16 8.06 -2.39 -0.02 1.14 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -66.71 342.95 3.18 -63.53 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 0.98 Total: 5.38 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 4.48 Total: -6.64 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -2.12 Total: -93.09 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.50 Total: -13.94 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 35 Polarization: -2.73 SS G_CDS: -0.69 Total: -3.42 kcal Total: -66.71 3.18 -63.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225035276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.243 kcal (2) G-P(sol) polarization free energy of solvation -66.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds