Wall clock time and date at job start Tue Mar 31 2020 13:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99623 * 2 1 4 4 H 1.48502 * 109.47140 * 85.11762 * 3 2 1 5 5 H 1.48500 * 109.46956 * 205.11632 * 3 2 1 6 6 H 1.48499 * 109.47517 * 325.11865 * 3 2 1 7 7 C 1.38804 * 120.00049 * 180.27389 * 2 1 3 8 8 H 1.08004 * 119.99981 * 171.98437 * 7 2 1 9 9 N 1.36943 * 120.00132 * 351.98735 * 7 2 1 10 10 C 1.47424 * 125.64536 * 346.75181 * 9 7 2 11 11 C 1.54907 * 104.83286 * 204.09645 * 10 9 7 12 12 C 1.55156 * 101.58064 * 322.99600 * 11 10 9 13 13 H 1.09007 * 110.72300 * 277.13942 * 12 11 10 14 14 O 1.42898 * 110.72122 * 154.04266 * 12 11 10 15 15 C 1.35960 * 117.00341 * 156.28987 * 14 12 11 16 16 C 1.38658 * 120.05999 * 5.96067 * 15 14 12 17 17 C 1.38181 * 119.96956 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.95140 * 180.02562 * 17 16 15 19 19 F 1.39908 * 109.47411 * 89.99935 * 18 17 16 20 20 F 1.39904 * 109.46983 * 209.99822 * 18 17 16 21 21 F 1.39905 * 109.47475 * 329.99891 * 18 17 16 22 22 C 1.38254 * 120.09820 * 0.02562 * 17 16 15 23 23 C 1.38262 * 120.12067 * 0.02562 * 22 17 16 24 24 C 1.38328 * 120.03373 * 359.70096 * 23 22 17 25 25 F 1.35092 * 120.04986 * 180.28076 * 24 23 22 26 26 C 1.47020 * 125.64901 * 166.45609 * 9 7 2 27 27 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.37048 * 322.93997 * 10 9 7 29 29 H 1.09003 * 110.36231 * 85.15136 * 10 9 7 30 30 H 1.09002 * 111.00435 * 81.06851 * 11 10 9 31 31 H 1.08998 * 111.00506 * 204.92221 * 11 10 9 32 32 H 1.08008 * 120.01675 * 0.02562 * 16 15 14 33 33 H 1.07995 * 119.94171 * 179.97438 * 22 17 16 34 34 H 1.08008 * 119.97907 * 180.02562 * 23 22 17 35 35 H 1.09006 * 109.87988 * 298.38953 * 26 9 7 36 36 H 1.08997 * 109.88535 * 59.54975 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3944 2.1060 1.3950 5 1 3.5955 1.4126 -0.5943 6 1 1.5030 2.6207 -0.8006 7 6 2.0103 -1.2021 -0.0057 8 1 3.0824 -1.2060 -0.1362 9 7 1.3356 -2.3830 0.1539 10 6 -0.0595 -2.5206 0.6101 11 6 -0.1432 -3.9485 1.2050 12 6 0.7749 -4.7428 0.2388 13 1 0.2297 -5.0342 -0.6591 14 8 1.3222 -5.8906 0.8905 15 6 1.7175 -6.9213 0.0968 16 6 1.6971 -6.7830 -1.2827 17 6 2.0997 -7.8316 -2.0876 18 6 2.0779 -7.6806 -3.5868 19 9 3.3092 -7.1797 -4.0231 20 9 1.8458 -8.9273 -4.1777 21 9 1.0585 -6.7946 -3.9516 22 6 2.5225 -9.0190 -1.5195 23 6 2.5434 -9.1615 -0.1444 24 6 2.1469 -8.1132 0.6664 25 9 2.1726 -8.2502 2.0102 26 6 1.8807 -3.7233 -0.1071 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2836 -1.7772 1.3751 29 1 -0.7454 -2.4173 -0.2307 30 1 0.2474 -3.9714 2.2224 31 1 -1.1651 -4.3262 1.1719 32 1 1.3674 -5.8558 -1.7279 33 1 2.8363 -9.8370 -2.1509 34 1 2.8746 -10.0900 0.2970 35 1 2.1554 -3.8135 -1.1581 36 1 2.7532 -3.8977 0.5225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225331118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:01 Heat of formation + Delta-G solvation = -176.306332 kcal Electronic energy + Delta-G solvation = -26967.285561 eV Core-core repulsion = 22338.425912 eV Total energy + Delta-G solvation = -4628.859649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.31706 -49.02937 -47.84013 -47.76211 -40.38833 -38.26850 -36.33146 -32.49083 -31.85428 -30.51450 -29.26349 -27.71304 -26.03910 -24.73404 -23.29549 -22.30086 -20.45055 -20.42288 -19.12001 -18.64382 -18.59019 -17.73659 -17.15844 -16.86138 -16.59207 -16.03954 -15.13639 -14.83850 -14.76088 -14.65261 -14.54296 -14.31370 -14.17395 -13.92964 -13.90998 -13.87961 -13.77416 -13.43026 -12.87785 -12.56392 -12.40306 -12.14604 -11.95130 -11.77073 -11.48132 -10.97980 -10.85066 -10.63194 -10.45398 -10.11096 -9.99579 -9.82332 -9.42714 -8.68682 -8.46677 -6.90841 -5.84289 -3.19715 0.45376 0.86801 2.43270 2.97648 3.01718 3.36228 3.41892 3.43720 3.46849 3.81267 3.92690 4.23009 4.37589 4.42363 4.63003 4.72904 5.02980 5.09431 5.12925 5.30817 5.38366 5.44716 5.57127 5.63107 5.66669 5.77139 6.04478 6.20479 6.27557 6.36004 6.44042 6.53264 7.28416 7.33565 7.45322 7.68295 8.14613 9.08678 9.69567 10.35393 11.29197 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.014626 B = 0.003801 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.981868 B = 7364.245222 C = 8542.515504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.174 3.826 11 C -0.136 4.136 12 C 0.064 3.936 13 H 0.082 0.918 14 O -0.289 6.289 15 C 0.112 3.888 16 C -0.136 4.136 17 C -0.154 4.154 18 C 0.511 3.489 19 F -0.173 7.173 20 F -0.177 7.177 21 F -0.173 7.173 22 C -0.088 4.088 23 C -0.119 4.119 24 C 0.096 3.904 25 F -0.123 7.123 26 C 0.118 3.882 27 H 0.255 0.745 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.153 0.847 35 H 0.028 0.972 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 -19.989 -3.328 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.362 4.362 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.049 3.951 11 C -0.175 4.175 12 C 0.008 3.992 13 H 0.100 0.900 14 O -0.202 6.202 15 C 0.064 3.936 16 C -0.155 4.155 17 C -0.156 4.156 18 C 0.457 3.543 19 F -0.154 7.154 20 F -0.158 7.158 21 F -0.154 7.154 22 C -0.106 4.106 23 C -0.138 4.138 24 C 0.076 3.924 25 F -0.102 7.102 26 C -0.009 4.009 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.046 0.954 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.322 -19.721 -3.119 20.101 hybrid contribution 0.406 0.966 -0.317 1.095 sum 2.728 -18.754 -3.436 19.261 Atomic orbital electron populations 1.69924 1.05038 1.25504 1.55932 1.24879 0.95673 0.97953 1.01471 0.86074 0.78747 0.83178 0.77602 1.21451 1.20456 1.21604 1.19027 0.90883 0.82263 1.44031 0.90513 1.44325 1.10869 0.99706 1.77601 1.21441 0.86289 0.89740 0.97602 1.23209 0.97255 0.97840 0.99150 1.23850 0.95678 0.82808 0.96837 0.90044 1.86278 1.75299 1.24270 1.34315 1.18919 0.96537 0.88440 0.89673 1.21081 1.02145 1.00372 0.91908 1.19760 1.07580 0.97206 0.91039 1.18185 0.74095 0.73851 0.88216 1.93250 1.43523 1.87530 1.91135 1.93187 1.94366 1.42228 1.86046 1.93230 1.60084 1.69075 1.93007 1.20625 0.99054 0.96409 0.94546 1.20932 1.01450 0.98496 0.92880 1.17161 1.04385 0.92891 0.77962 1.91540 1.94104 1.95966 1.28578 1.21725 0.94616 0.86623 0.97916 0.93495 0.90765 0.94691 0.90567 0.91087 0.82677 0.83680 0.82978 0.95393 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.76 55.49 0.60 -25.73 16 2 C 0.00 -0.07 5.40 -17.43 -0.09 -0.17 16 3 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.46 10.23 -15.06 -0.15 -6.61 16 8 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 9 N -0.60 -15.05 3.39 -170.07 -0.58 -15.63 16 10 C 0.17 4.05 5.38 -2.53 -0.01 4.04 16 11 C -0.14 -2.49 6.81 -24.58 -0.17 -2.65 16 12 C 0.06 1.12 2.73 -24.89 -0.07 1.05 16 13 H 0.08 1.29 6.29 -51.93 -0.33 0.96 16 14 O -0.29 -4.79 9.75 -19.62 -0.19 -4.98 16 15 C 0.11 1.58 6.68 -39.18 -0.26 1.32 16 16 C -0.14 -1.78 8.24 -39.45 -0.33 -2.10 16 17 C -0.15 -1.73 5.45 -104.64 -0.57 -2.31 16 18 C 0.51 5.81 3.36 36.01 0.12 5.93 16 19 F -0.17 -2.11 17.30 2.25 0.04 -2.07 16 20 F -0.18 -1.84 16.46 2.25 0.04 -1.81 16 21 F -0.17 -2.18 16.46 2.25 0.04 -2.14 16 22 C -0.09 -0.80 9.39 -39.57 -0.37 -1.17 16 23 C -0.12 -1.09 10.02 -39.54 -0.40 -1.49 16 24 C 0.10 1.19 7.31 -39.30 -0.29 0.91 16 25 F -0.12 -1.67 17.11 2.25 0.04 -1.63 16 26 C 0.12 2.44 6.79 -3.06 -0.02 2.42 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.07 1.91 7.11 -51.93 -0.37 1.54 16 29 H 0.04 0.87 8.01 -51.93 -0.42 0.45 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.16 2.11 5.13 -52.48 -0.27 1.84 16 33 H 0.15 0.94 7.60 -52.49 -0.40 0.54 16 34 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.03 0.57 7.76 -51.93 -0.40 0.17 16 36 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 LS Contribution 320.36 15.07 4.83 4.83 Total: -1.00 -29.63 320.36 -6.24 -35.87 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -3.42 Total: -2.62 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.61 Total: -0.83 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.02 Total: -41.36 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.19 Total: -4.98 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.15 Total: -7.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.63 -6.24 -35.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225331118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.435 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds