Wall clock time and date at job start Tue Mar 31 2020 13:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 119.99623 * 2 1 4 4 H 1.48502 * 109.47140 * 85.11762 * 3 2 1 5 5 H 1.48500 * 109.46956 * 205.11632 * 3 2 1 6 6 H 1.48499 * 109.47517 * 325.11865 * 3 2 1 7 7 C 1.38804 * 120.00049 * 180.27389 * 2 1 3 8 8 H 1.08004 * 119.99981 * 171.98437 * 7 2 1 9 9 N 1.36943 * 120.00132 * 351.98735 * 7 2 1 10 10 C 1.47424 * 125.64536 * 346.75181 * 9 7 2 11 11 C 1.54907 * 104.83286 * 204.09645 * 10 9 7 12 12 C 1.55156 * 101.58064 * 322.99600 * 11 10 9 13 13 H 1.09007 * 110.72300 * 277.13942 * 12 11 10 14 14 O 1.42898 * 110.72122 * 154.04266 * 12 11 10 15 15 C 1.35960 * 117.00341 * 156.28987 * 14 12 11 16 16 C 1.38658 * 120.05999 * 5.96067 * 15 14 12 17 17 C 1.38181 * 119.96956 * 179.97438 * 16 15 14 18 18 C 1.50700 * 119.95140 * 180.02562 * 17 16 15 19 19 F 1.39908 * 109.47411 * 89.99935 * 18 17 16 20 20 F 1.39904 * 109.46983 * 209.99822 * 18 17 16 21 21 F 1.39905 * 109.47475 * 329.99891 * 18 17 16 22 22 C 1.38254 * 120.09820 * 0.02562 * 17 16 15 23 23 C 1.38262 * 120.12067 * 0.02562 * 22 17 16 24 24 C 1.38328 * 120.03373 * 359.70096 * 23 22 17 25 25 F 1.35092 * 120.04986 * 180.28076 * 24 23 22 26 26 C 1.47020 * 125.64901 * 166.45609 * 9 7 2 27 27 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 28 28 H 1.09000 * 110.37048 * 322.93997 * 10 9 7 29 29 H 1.09003 * 110.36231 * 85.15136 * 10 9 7 30 30 H 1.09002 * 111.00435 * 81.06851 * 11 10 9 31 31 H 1.08998 * 111.00506 * 204.92221 * 11 10 9 32 32 H 1.08008 * 120.01675 * 0.02562 * 16 15 14 33 33 H 1.07995 * 119.94171 * 179.97438 * 22 17 16 34 34 H 1.08008 * 119.97907 * 180.02562 * 23 22 17 35 35 H 1.09006 * 109.87988 * 298.38953 * 26 9 7 36 36 H 1.08997 * 109.88535 * 59.54975 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3944 2.1060 1.3950 5 1 3.5955 1.4126 -0.5943 6 1 1.5030 2.6207 -0.8006 7 6 2.0103 -1.2021 -0.0057 8 1 3.0824 -1.2060 -0.1362 9 7 1.3356 -2.3830 0.1539 10 6 -0.0595 -2.5206 0.6101 11 6 -0.1432 -3.9485 1.2050 12 6 0.7749 -4.7428 0.2388 13 1 0.2297 -5.0342 -0.6591 14 8 1.3222 -5.8906 0.8905 15 6 1.7175 -6.9213 0.0968 16 6 1.6971 -6.7830 -1.2827 17 6 2.0997 -7.8316 -2.0876 18 6 2.0779 -7.6806 -3.5868 19 9 3.3092 -7.1797 -4.0231 20 9 1.8458 -8.9273 -4.1777 21 9 1.0585 -6.7946 -3.9516 22 6 2.5225 -9.0190 -1.5195 23 6 2.5434 -9.1615 -0.1444 24 6 2.1469 -8.1132 0.6664 25 9 2.1726 -8.2502 2.0102 26 6 1.8807 -3.7233 -0.1071 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2836 -1.7772 1.3751 29 1 -0.7454 -2.4173 -0.2307 30 1 0.2474 -3.9714 2.2224 31 1 -1.1651 -4.3262 1.1719 32 1 1.3674 -5.8558 -1.7279 33 1 2.8363 -9.8370 -2.1509 34 1 2.8746 -10.0900 0.2970 35 1 2.1554 -3.8135 -1.1581 36 1 2.7532 -3.8977 0.5225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225331118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:00 Heat of formation + Delta-G solvation = -192.291388 kcal Electronic energy + Delta-G solvation = -26967.978725 eV Core-core repulsion = 22338.425912 eV Total energy + Delta-G solvation = -4629.552813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.22752 -50.00926 -48.74212 -48.69008 -41.50203 -39.47729 -37.86786 -34.38977 -32.78226 -31.70150 -30.90570 -29.33446 -27.04378 -26.53188 -24.39713 -23.27679 -22.23788 -21.81940 -20.17363 -19.55456 -19.54067 -19.01618 -18.64336 -18.01080 -17.67651 -17.11051 -16.81558 -16.42959 -15.89599 -15.68229 -15.53982 -15.45703 -15.20524 -15.11850 -14.98556 -14.84277 -14.78319 -14.61980 -14.37954 -14.01035 -13.72407 -13.54274 -13.29193 -12.97932 -12.86231 -12.70487 -12.58206 -12.23527 -12.04244 -11.92631 -11.77377 -11.59813 -10.75504 -10.29223 -9.50434 -8.93684 -7.94657 -5.32405 -0.44313 -0.01098 1.45589 1.46723 1.53274 1.56147 1.82768 2.11888 2.46193 2.56927 2.92422 2.98779 3.26382 3.32725 3.48376 3.50618 3.58943 3.79132 3.84616 3.88179 3.98139 4.25970 4.43916 4.52257 4.59026 4.70463 4.80660 4.84177 4.86313 4.90886 4.94744 5.36000 5.41502 5.49850 5.62302 6.09602 6.14548 7.01056 7.65922 8.31780 9.17601 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.014626 B = 0.003801 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.981868 B = 7364.245222 C = 8542.515504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.054 4.054 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.291 1.291 7 C -0.253 4.253 8 H 0.076 0.924 9 N -0.620 5.620 10 C 0.179 3.821 11 C -0.122 4.122 12 C 0.083 3.917 13 H 0.098 0.902 14 O -0.303 6.303 15 C 0.083 3.917 16 C -0.144 4.144 17 C -0.159 4.159 18 C 0.514 3.486 19 F -0.179 7.179 20 F -0.168 7.168 21 F -0.183 7.183 22 C -0.069 4.069 23 C -0.099 4.099 24 C 0.086 3.914 25 F -0.133 7.133 26 C 0.116 3.884 27 H 0.252 0.748 28 H 0.041 0.959 29 H 0.014 0.986 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.181 0.819 34 H 0.192 0.808 35 H 0.030 0.970 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -22.513 -3.718 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.249 4.249 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.194 1.194 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.348 5.348 10 C 0.054 3.946 11 C -0.160 4.160 12 C 0.027 3.973 13 H 0.116 0.884 14 O -0.216 6.216 15 C 0.036 3.964 16 C -0.163 4.163 17 C -0.161 4.161 18 C 0.459 3.541 19 F -0.160 7.160 20 F -0.149 7.149 21 F -0.164 7.164 22 C -0.087 4.087 23 C -0.117 4.117 24 C 0.066 3.934 25 F -0.111 7.111 26 C -0.009 4.009 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.032 0.968 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.161 0.839 33 H 0.198 0.802 34 H 0.209 0.791 35 H 0.048 0.952 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.257 -22.283 -3.513 22.792 hybrid contribution 0.186 1.598 -0.253 1.628 sum 3.443 -20.686 -3.766 21.306 Atomic orbital electron populations 1.70103 1.06328 1.25903 1.56849 1.25685 0.96552 1.01070 1.01552 0.85062 0.77853 0.78946 0.77451 1.21181 1.19363 1.21695 1.19360 0.91271 0.83702 1.43793 0.90589 1.44605 1.11573 1.00711 1.77900 1.21226 0.85220 0.92086 0.96028 1.23018 0.99439 0.94796 0.98776 1.23478 0.94092 0.82705 0.97055 0.88404 1.86219 1.76147 1.24442 1.34776 1.19146 0.98660 0.88565 0.90017 1.20967 1.02957 1.00640 0.91718 1.19847 1.07860 0.97687 0.90687 1.18180 0.73622 0.73897 0.88359 1.93241 1.43859 1.87684 1.91228 1.93204 1.94281 1.41494 1.85942 1.93212 1.60544 1.69564 1.93122 1.21075 0.96576 0.96142 0.94915 1.21358 0.99188 0.98682 0.92477 1.17500 1.04772 0.93163 0.77919 1.91518 1.94249 1.95993 1.29381 1.21806 0.95567 0.85781 0.97791 0.93903 0.94012 0.96772 0.90693 0.87951 0.83933 0.80183 0.79083 0.95178 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.85 10.76 21.65 0.23 -55.61 16 2 C -0.05 -3.07 5.40 84.86 0.46 -2.61 16 3 Si 0.98 45.44 29.56 68.60 2.03 47.46 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.25 -14.30 10.23 84.03 0.86 -13.44 16 8 H 0.08 4.18 7.84 -2.91 -0.02 4.16 16 9 N -0.62 -32.19 3.39 -691.98 -2.35 -34.54 16 10 C 0.18 8.64 5.38 86.85 0.47 9.11 16 11 C -0.12 -4.46 6.81 31.99 0.22 -4.24 16 12 C 0.08 2.88 2.73 31.78 0.09 2.97 16 13 H 0.10 3.07 6.29 -2.38 -0.01 3.05 16 14 O -0.30 -9.89 9.75 -93.10 -0.91 -10.79 16 15 C 0.08 2.24 6.68 22.53 0.15 2.39 16 16 C -0.14 -3.60 8.24 22.36 0.18 -3.42 16 17 C -0.16 -3.21 5.45 -19.87 -0.11 -3.32 16 18 C 0.51 10.70 3.36 71.24 0.24 10.94 16 19 F -0.18 -4.07 17.30 44.97 0.78 -3.29 16 20 F -0.17 -3.02 16.46 44.97 0.74 -2.28 16 21 F -0.18 -4.47 16.46 44.97 0.74 -3.72 16 22 C -0.07 -0.97 9.39 22.28 0.21 -0.76 16 23 C -0.10 -1.40 10.02 22.30 0.22 -1.18 16 24 C 0.09 1.95 7.31 22.45 0.16 2.12 16 25 F -0.13 -3.37 17.11 44.97 0.77 -2.60 16 26 C 0.12 4.92 6.79 86.73 0.59 5.51 16 27 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.04 2.25 7.11 -2.39 -0.02 2.23 16 29 H 0.01 0.73 8.01 -2.39 -0.02 0.72 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.14 3.87 5.13 -2.91 -0.01 3.85 16 33 H 0.18 1.32 7.60 -2.91 -0.02 1.30 16 34 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.03 1.26 7.76 -2.38 -0.02 1.24 16 36 H 0.03 1.28 8.06 -2.39 -0.02 1.26 16 Total: -1.00 -66.00 320.36 6.91 -59.08 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.14 Total: 2.22 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 3.74 Total: 4.08 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.12 Total: -90.16 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.91 Total: -10.79 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 3.03 Total: -11.90 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.00 6.91 -59.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225331118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.210 kcal (2) G-P(sol) polarization free energy of solvation -65.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds