Wall clock time and date at job start Tue Mar 31 2020 13:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86799 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47541 * 269.99861 * 3 2 1 5 5 H 1.48497 * 109.46934 * 30.00198 * 3 2 1 6 6 H 1.48507 * 109.47064 * 149.99903 * 3 2 1 7 7 C 1.40048 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99937 * 162.92937 * 7 2 1 9 9 C 1.40775 * 119.99878 * 342.92255 * 7 2 1 10 10 C 1.41460 * 120.51918 * 335.55154 * 9 7 2 11 11 C 1.36344 * 118.45501 * 179.97438 * 10 9 7 12 12 C 1.40453 * 119.44469 * 359.97438 * 11 10 9 13 13 C 1.46554 * 119.49632 * 180.02562 * 12 11 10 14 14 C 1.35015 * 120.00214 * 179.72958 * 13 12 11 15 15 C 1.47102 * 120.00015 * 180.27725 * 14 13 12 16 16 C 1.39918 * 120.17603 * 359.72475 * 15 14 13 17 17 C 1.37863 * 119.82114 * 179.79414 * 16 15 14 18 18 C 1.38436 * 120.17083 * 0.47714 * 17 16 15 19 19 C 1.50705 * 119.81810 * 179.76780 * 18 17 16 20 20 F 1.39896 * 109.47187 * 269.98303 * 19 18 17 21 21 F 1.39905 * 109.46950 * 29.97804 * 19 18 17 22 22 F 1.39897 * 109.47057 * 149.97992 * 19 18 17 23 23 C 1.38423 * 120.35919 * 359.74929 * 18 17 16 24 24 C 1.37857 * 120.18157 * 0.02562 * 23 18 17 25 25 N 1.33448 * 121.00917 * 0.28294 * 12 11 10 26 26 C 1.31085 * 121.67910 * 359.42590 * 25 12 11 27 27 H 0.97000 * 119.99721 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.76973 * 359.94886 * 10 9 7 29 29 H 1.08006 * 120.27493 * 179.97438 * 11 10 9 30 30 H 1.08005 * 119.99783 * 0.02562 * 13 12 11 31 31 H 1.07994 * 119.99378 * 0.27262 * 14 13 12 32 32 H 1.08006 * 120.08986 * 359.97438 * 16 15 14 33 33 H 1.07990 * 119.91810 * 180.23037 * 17 16 15 34 34 H 1.08005 * 119.90756 * 179.97438 * 23 18 17 35 35 H 1.08002 * 120.09319 * 179.97438 * 24 23 18 36 36 H 1.08008 * 119.77509 * 180.26561 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4895 2.0464 -1.4000 5 1 1.4393 2.6526 0.7001 6 1 3.5395 1.4401 0.7001 7 6 2.0080 -1.2129 -0.0005 8 1 3.0523 -1.2334 -0.2751 9 6 1.3506 -2.4053 0.3569 10 6 0.2039 -2.3730 1.1847 11 6 -0.4000 -3.5529 1.5042 12 6 0.1280 -4.7557 1.0070 13 6 -0.5205 -6.0246 1.3493 14 6 -0.0248 -7.1864 0.8725 15 6 -0.6794 -8.4594 1.2111 16 6 -1.8126 -8.4711 2.0318 17 6 -2.4228 -9.6680 2.3411 18 6 -1.9113 -10.8570 1.8500 19 6 -2.5816 -12.1613 2.1973 20 9 -2.0211 -12.6755 3.3714 21 9 -3.9505 -11.9454 2.3899 22 9 -2.3957 -13.0737 1.1533 23 6 -0.7879 -10.8544 1.0413 24 6 -0.1688 -9.6655 0.7190 25 7 1.2142 -4.7612 0.2317 26 6 1.8245 -3.6513 -0.1060 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1839 -1.4356 1.5552 29 1 -1.2770 -3.5626 2.1345 30 1 -1.3979 -6.0299 1.9792 31 1 0.8523 -7.1809 0.2424 32 1 -2.2099 -7.5447 2.4196 33 1 -3.2996 -9.6785 2.9713 34 1 -0.3948 -11.7863 0.6625 35 1 0.7079 -9.6651 0.0883 36 1 2.6990 -3.6913 -0.7386 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235977977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:24 Heat of formation + Delta-G solvation = -98.594247 kcal Electronic energy + Delta-G solvation = -23986.373774 eV Core-core repulsion = 19791.653198 eV Total energy + Delta-G solvation = -4194.720576 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.23072 -47.75479 -47.69330 -39.30908 -38.46145 -34.88922 -33.85736 -31.36740 -31.05752 -30.81104 -29.20758 -26.51418 -24.87656 -23.17765 -22.62142 -21.85988 -21.11148 -19.06644 -18.57497 -18.49613 -18.36334 -17.64398 -16.13724 -15.78493 -15.17460 -15.02686 -14.59129 -14.54911 -14.46233 -14.18339 -14.11134 -14.03030 -13.92451 -13.86826 -13.37284 -13.04718 -12.87277 -12.68839 -12.53058 -12.02456 -11.89997 -11.65410 -11.48139 -11.42252 -11.03080 -10.83533 -10.69477 -10.24508 -10.10456 -9.63020 -9.08979 -8.57854 -8.49066 -8.22029 -7.33770 -7.10907 -4.70024 0.62287 1.32380 2.03070 2.62431 2.74073 2.83793 2.85965 2.89495 3.23561 3.60412 3.69975 3.85289 3.97844 4.37412 4.42346 4.78366 4.81008 5.03775 5.28287 5.37802 5.48023 5.49921 5.65064 5.82680 5.99539 6.02809 6.19327 6.25473 6.31220 6.49335 6.54260 6.65609 6.78369 6.85766 7.02363 7.15408 7.24289 7.54640 7.61551 7.74153 8.14988 8.32173 8.45033 9.42005 9.68559 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.047006 B = 0.001936 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.531610 B =14460.445012 C =14818.115661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.421 4.421 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.150 4.150 11 C -0.113 4.113 12 C -0.037 4.037 13 C -0.009 4.009 14 C -0.191 4.191 15 C 0.021 3.979 16 C -0.141 4.141 17 C -0.061 4.061 18 C -0.217 4.217 19 C 0.510 3.490 20 F -0.181 7.181 21 F -0.181 7.181 22 F -0.181 7.181 23 C -0.063 4.063 24 C -0.132 4.132 25 N -0.440 5.440 26 C -0.016 4.016 27 H 0.290 0.710 28 H 0.126 0.874 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -12.567 3.494 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.153 4.153 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.449 4.449 8 H 0.108 0.892 9 C 0.065 3.935 10 C -0.174 4.174 11 C -0.134 4.134 12 C -0.168 4.168 13 C -0.028 4.028 14 C -0.211 4.211 15 C 0.021 3.979 16 C -0.159 4.159 17 C -0.079 4.079 18 C -0.219 4.219 19 C 0.456 3.544 20 F -0.162 7.162 21 F -0.162 7.162 22 F -0.162 7.162 23 C -0.081 4.081 24 C -0.150 4.150 25 N -0.148 5.148 26 C -0.183 4.183 27 H 0.101 0.899 28 H 0.144 0.856 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.876 -13.227 3.226 14.156 hybrid contribution -0.262 1.432 0.332 1.493 sum -4.138 -11.794 3.558 12.996 Atomic orbital electron populations 1.69771 1.08011 1.30514 1.30673 1.26175 0.94919 1.02271 0.91901 0.86122 0.80658 0.79340 0.79766 1.18926 1.19656 1.17948 1.19746 0.98240 0.90920 1.36017 0.89192 1.18678 0.91955 0.93757 0.89064 1.21288 0.98845 0.97125 1.00162 1.21393 0.98906 0.93515 0.99549 1.18967 0.98394 0.91580 1.07886 1.21928 0.95471 0.91385 0.94031 1.21817 1.03201 0.89438 1.06671 1.19491 0.92432 0.94047 0.91909 1.21359 0.96625 0.97751 1.00144 1.20754 0.98686 0.91146 0.97355 1.19836 1.01764 0.91685 1.08601 1.18371 0.76466 0.85224 0.74295 1.93208 1.85061 1.88629 1.49344 1.93170 1.33117 1.94864 1.95088 1.93167 1.94993 1.69827 1.58263 1.20762 0.93220 0.99096 0.95053 1.21282 1.00973 0.90981 1.01720 1.67083 1.06371 1.31787 1.09512 1.22506 1.02853 0.87845 1.05135 0.89882 0.85600 0.88168 0.87206 0.85121 0.84832 0.85249 0.85251 0.84849 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.56 10.93 55.55 0.61 -16.96 16 2 C 0.07 1.53 5.17 -17.32 -0.09 1.44 16 3 Si 0.92 16.28 29.59 -169.99 -5.03 11.25 16 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 6 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 7 C -0.42 -9.86 9.05 -37.94 -0.34 -10.20 16 8 H 0.09 1.97 7.90 -52.49 -0.41 1.55 16 9 C 0.07 1.72 5.59 -106.62 -0.60 1.12 16 10 C -0.15 -3.56 8.72 -39.04 -0.34 -3.90 16 11 C -0.11 -2.47 9.75 -39.43 -0.38 -2.85 16 12 C -0.04 -0.81 6.71 -82.98 -0.56 -1.36 16 13 C -0.01 -0.17 9.27 -37.38 -0.35 -0.52 16 14 C -0.19 -3.22 9.45 -37.13 -0.35 -3.57 16 15 C 0.02 0.31 5.87 -105.04 -0.62 -0.31 16 16 C -0.14 -1.83 9.41 -39.09 -0.37 -2.19 16 17 C -0.06 -0.73 9.38 -39.65 -0.37 -1.10 16 18 C -0.22 -2.64 5.46 -104.48 -0.57 -3.21 16 19 C 0.51 5.92 3.36 36.01 0.12 6.04 16 20 F -0.18 -2.16 17.30 2.25 0.04 -2.12 16 21 F -0.18 -2.11 16.45 2.25 0.04 -2.07 16 22 F -0.18 -2.10 16.45 2.25 0.04 -2.06 16 23 C -0.06 -0.75 9.38 -39.65 -0.37 -1.12 16 24 C -0.13 -1.68 9.80 -39.09 -0.38 -2.06 16 25 N -0.44 -10.19 9.28 -9.27 -0.09 -10.28 16 26 C -0.02 -0.37 10.97 -16.78 -0.18 -0.56 16 27 H 0.29 5.94 8.29 -40.82 -0.34 5.60 16 28 H 0.13 3.02 6.22 -52.49 -0.33 2.69 16 29 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 30 H 0.11 1.66 6.08 -52.48 -0.32 1.34 16 31 H 0.13 2.36 7.38 -52.49 -0.39 1.97 16 32 H 0.13 1.55 6.17 -52.48 -0.32 1.23 16 33 H 0.13 1.29 7.59 -52.49 -0.40 0.89 16 34 H 0.13 1.26 7.59 -52.48 -0.40 0.86 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.13 2.78 8.06 -52.48 -0.42 2.35 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -25.12 330.05 -8.15 -33.27 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -2.97 Total: 8.34 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -5.75 Total: -24.35 kcal Atomic # 7 Polarization: -27.75 SS G_CDS: 0.52 Total: -27.23 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.11 Total: -6.25 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -25.12 -8.15 -33.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235977977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.328 kcal (2) G-P(sol) polarization free energy of solvation -25.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds