Wall clock time and date at job start Tue Mar 31 2020 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86799 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47541 * 269.99861 * 3 2 1 5 5 H 1.48497 * 109.46934 * 30.00198 * 3 2 1 6 6 H 1.48507 * 109.47064 * 149.99903 * 3 2 1 7 7 C 1.40048 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99937 * 162.92937 * 7 2 1 9 9 C 1.40775 * 119.99878 * 342.92255 * 7 2 1 10 10 C 1.41460 * 120.51918 * 335.55154 * 9 7 2 11 11 C 1.36344 * 118.45501 * 179.97438 * 10 9 7 12 12 C 1.40453 * 119.44469 * 359.97438 * 11 10 9 13 13 C 1.46554 * 119.49632 * 180.02562 * 12 11 10 14 14 C 1.35015 * 120.00214 * 179.72958 * 13 12 11 15 15 C 1.47102 * 120.00015 * 180.27725 * 14 13 12 16 16 C 1.39918 * 120.17603 * 359.72475 * 15 14 13 17 17 C 1.37863 * 119.82114 * 179.79414 * 16 15 14 18 18 C 1.38436 * 120.17083 * 0.47714 * 17 16 15 19 19 C 1.50705 * 119.81810 * 179.76780 * 18 17 16 20 20 F 1.39896 * 109.47187 * 269.98303 * 19 18 17 21 21 F 1.39905 * 109.46950 * 29.97804 * 19 18 17 22 22 F 1.39897 * 109.47057 * 149.97992 * 19 18 17 23 23 C 1.38423 * 120.35919 * 359.74929 * 18 17 16 24 24 C 1.37857 * 120.18157 * 0.02562 * 23 18 17 25 25 N 1.33448 * 121.00917 * 0.28294 * 12 11 10 26 26 C 1.31085 * 121.67910 * 359.42590 * 25 12 11 27 27 H 0.97000 * 119.99721 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.76973 * 359.94886 * 10 9 7 29 29 H 1.08006 * 120.27493 * 179.97438 * 11 10 9 30 30 H 1.08005 * 119.99783 * 0.02562 * 13 12 11 31 31 H 1.07994 * 119.99378 * 0.27262 * 14 13 12 32 32 H 1.08006 * 120.08986 * 359.97438 * 16 15 14 33 33 H 1.07990 * 119.91810 * 180.23037 * 17 16 15 34 34 H 1.08005 * 119.90756 * 179.97438 * 23 18 17 35 35 H 1.08002 * 120.09319 * 179.97438 * 24 23 18 36 36 H 1.08008 * 119.77509 * 180.26561 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4895 2.0464 -1.4000 5 1 1.4393 2.6526 0.7001 6 1 3.5395 1.4401 0.7001 7 6 2.0080 -1.2129 -0.0005 8 1 3.0523 -1.2334 -0.2751 9 6 1.3506 -2.4053 0.3569 10 6 0.2039 -2.3730 1.1847 11 6 -0.4000 -3.5529 1.5042 12 6 0.1280 -4.7557 1.0070 13 6 -0.5205 -6.0246 1.3493 14 6 -0.0248 -7.1864 0.8725 15 6 -0.6794 -8.4594 1.2111 16 6 -1.8126 -8.4711 2.0318 17 6 -2.4228 -9.6680 2.3411 18 6 -1.9113 -10.8570 1.8500 19 6 -2.5816 -12.1613 2.1973 20 9 -2.0211 -12.6755 3.3714 21 9 -3.9505 -11.9454 2.3899 22 9 -2.3957 -13.0737 1.1533 23 6 -0.7879 -10.8544 1.0413 24 6 -0.1688 -9.6655 0.7190 25 7 1.2142 -4.7612 0.2317 26 6 1.8245 -3.6513 -0.1060 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1839 -1.4356 1.5552 29 1 -1.2770 -3.5626 2.1345 30 1 -1.3979 -6.0299 1.9792 31 1 0.8523 -7.1809 0.2424 32 1 -2.2099 -7.5447 2.4196 33 1 -3.2996 -9.6785 2.9713 34 1 -0.3948 -11.7863 0.6625 35 1 0.7079 -9.6651 0.0883 36 1 2.6990 -3.6913 -0.7386 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235977977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:23 Heat of formation + Delta-G solvation = -107.643618 kcal Electronic energy + Delta-G solvation = -23986.766184 eV Core-core repulsion = 19791.653198 eV Total energy + Delta-G solvation = -4195.112986 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.088 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.15718 -48.67473 -48.62472 -40.44804 -40.06114 -36.43641 -35.23672 -32.71867 -32.56195 -32.09653 -30.63704 -27.87084 -26.22364 -24.44046 -23.82945 -23.43152 -22.48205 -20.40584 -19.50591 -19.44287 -19.36997 -19.29569 -17.50395 -17.37192 -16.46138 -16.20615 -15.80852 -15.63597 -15.58431 -15.46429 -15.27535 -15.08462 -14.86840 -14.78982 -14.48157 -14.41319 -14.24657 -13.99235 -13.82035 -13.59485 -13.48550 -13.22051 -12.87750 -12.64020 -12.32878 -12.14862 -11.91040 -11.74839 -11.56837 -11.16659 -10.28263 -10.05118 -10.03965 -9.92317 -8.91066 -8.67963 -6.44458 -0.51984 0.34933 0.56308 1.06573 1.35835 1.39880 1.53387 1.68051 1.80239 2.13870 2.62869 2.74944 2.84249 3.04722 3.45087 3.72646 3.78640 3.80781 3.89581 4.00378 4.32796 4.36331 4.42841 4.49190 4.72548 4.75486 4.77289 4.97597 4.98383 5.10525 5.19482 5.21131 5.27208 5.35301 5.70605 5.77817 5.79461 5.87911 5.94256 6.09280 6.42342 6.62200 6.71853 7.66591 8.10076 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.047006 B = 0.001936 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.531610 B =14460.445012 C =14818.115661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.034 3.966 3 Si 0.991 3.009 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.458 4.458 8 H 0.093 0.907 9 C 0.043 3.957 10 C -0.167 4.167 11 C -0.121 4.121 12 C -0.035 4.035 13 C -0.041 4.041 14 C -0.157 4.157 15 C -0.008 4.008 16 C -0.134 4.134 17 C -0.065 4.065 18 C -0.212 4.212 19 C 0.515 3.485 20 F -0.182 7.182 21 F -0.180 7.180 22 F -0.180 7.180 23 C -0.066 4.066 24 C -0.127 4.127 25 N -0.456 5.456 26 C -0.040 4.040 27 H 0.298 0.702 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.114 0.886 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -14.324 4.218 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.188 1.188 6 H -0.179 1.179 7 C -0.486 4.486 8 H 0.111 0.889 9 C 0.038 3.962 10 C -0.192 4.192 11 C -0.141 4.141 12 C -0.169 4.169 13 C -0.060 4.060 14 C -0.178 4.178 15 C -0.008 4.008 16 C -0.152 4.152 17 C -0.083 4.083 18 C -0.214 4.214 19 C 0.461 3.539 20 F -0.163 7.163 21 F -0.161 7.161 22 F -0.161 7.161 23 C -0.084 4.084 24 C -0.145 4.145 25 N -0.164 5.164 26 C -0.205 4.205 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.821 -14.997 3.937 16.237 hybrid contribution -0.110 1.475 0.154 1.487 sum -4.931 -13.522 4.091 14.963 Atomic orbital electron populations 1.69802 1.09346 1.31769 1.31645 1.26992 0.95578 1.05121 0.90819 0.85051 0.79126 0.74932 0.79847 1.18374 1.18817 1.17884 1.19961 0.98662 0.91762 1.38168 0.88943 1.18959 0.92770 0.94519 0.89945 1.21357 0.99423 0.97610 1.00828 1.21707 0.99708 0.92915 0.99768 1.19621 0.97587 0.93358 1.06287 1.21992 0.97380 0.89871 0.96716 1.21896 1.01545 0.90516 1.03797 1.19443 0.93844 0.93326 0.94161 1.21550 0.95757 0.98841 0.99064 1.21010 0.99274 0.90588 0.97401 1.20085 1.01478 0.92108 1.07683 1.18258 0.76428 0.84968 0.74246 1.93213 1.85092 1.88610 1.49412 1.93179 1.33021 1.94843 1.95073 1.93176 1.94982 1.69752 1.58199 1.21008 0.92977 0.99640 0.94735 1.21486 1.01126 0.90786 1.01112 1.67133 1.07254 1.31641 1.10384 1.22679 1.03692 0.88062 1.06057 0.89117 0.86459 0.85222 0.84134 0.86773 0.83470 0.83076 0.83079 0.83662 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.91 10.93 21.84 0.24 -37.67 16 2 C 0.03 1.52 5.17 85.29 0.44 1.96 16 3 Si 0.99 33.83 29.59 68.60 2.03 35.86 16 4 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 5 H -0.26 -8.56 7.11 99.48 0.71 -7.86 16 6 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 7 C -0.46 -22.44 9.05 23.33 0.21 -22.22 16 8 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 9 C 0.04 2.19 5.59 -21.16 -0.12 2.07 16 10 C -0.17 -8.26 8.72 22.62 0.20 -8.07 16 11 C -0.12 -5.34 9.75 22.37 0.22 -5.12 16 12 C -0.04 -1.54 6.71 41.61 0.28 -1.27 16 13 C -0.04 -1.43 9.27 23.70 0.22 -1.21 16 14 C -0.16 -5.08 9.45 23.86 0.23 -4.86 16 15 C -0.01 -0.20 5.87 -20.14 -0.12 -0.32 16 16 C -0.13 -3.06 9.41 22.59 0.21 -2.84 16 17 C -0.06 -1.32 9.38 22.23 0.21 -1.11 16 18 C -0.21 -4.43 5.46 -19.77 -0.11 -4.54 16 19 C 0.52 10.30 3.36 71.24 0.24 10.54 16 20 F -0.18 -3.81 17.30 44.97 0.78 -3.03 16 21 F -0.18 -3.63 16.45 44.97 0.74 -2.89 16 22 F -0.18 -3.61 16.45 44.97 0.74 -2.87 16 23 C -0.07 -1.33 9.38 22.22 0.21 -1.12 16 24 C -0.13 -2.91 9.80 22.59 0.22 -2.68 16 25 N -0.46 -21.68 9.28 -183.26 -1.70 -23.38 16 26 C -0.04 -1.96 10.97 85.51 0.94 -1.02 16 27 H 0.30 12.50 8.29 -92.71 -0.77 11.73 16 28 H 0.12 5.88 6.22 -2.91 -0.02 5.87 16 29 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.14 3.89 6.08 -2.91 -0.02 3.88 16 31 H 0.11 4.07 7.38 -2.91 -0.02 4.05 16 32 H 0.15 2.91 6.17 -2.91 -0.02 2.89 16 33 H 0.15 2.41 7.59 -2.92 -0.02 2.39 16 34 H 0.15 2.39 7.59 -2.91 -0.02 2.37 16 35 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.14 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -55.54 330.05 7.44 -48.10 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.14 Total: 27.67 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 3.48 Total: -41.80 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -1.46 Total: -61.05 kcal Atomic # 9 Polarization: -11.04 SS G_CDS: 2.26 Total: -8.78 kcal Atomic # 14 Polarization: 33.83 SS G_CDS: 2.03 Total: 35.86 kcal Total: -55.54 7.44 -48.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235977977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.544 kcal (2) G-P(sol) polarization free energy of solvation -55.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds