Wall clock time and date at job start Tue Mar 31 2020 13:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86798 * 119.99879 * 2 1 4 4 H 1.48499 * 109.47278 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47223 * 120.00405 * 3 2 1 6 6 H 1.48500 * 109.47476 * 240.00009 * 3 2 1 7 7 C 1.39979 * 119.99948 * 179.72984 * 2 1 3 8 8 H 1.08005 * 120.00387 * 357.91245 * 7 2 1 9 9 C 1.41345 * 119.99964 * 177.91926 * 7 2 1 10 10 C 1.40786 * 119.74635 * 182.29500 * 9 7 2 11 11 C 1.38314 * 119.25300 * 179.76435 * 10 9 7 12 12 C 1.38620 * 118.73405 * 0.50150 * 11 10 9 13 13 C 1.40272 * 119.43852 * 359.74188 * 12 11 10 14 14 C 1.47221 * 119.65068 * 179.97438 * 13 12 11 15 15 C 1.34402 * 120.00460 * 180.02562 * 14 13 12 16 16 C 1.47331 * 120.00239 * 180.02562 * 15 14 13 17 17 C 1.39788 * 120.16184 * 359.72818 * 16 15 14 18 18 C 1.37889 * 119.82922 * 179.72372 * 17 16 15 19 19 C 1.38406 * 120.16565 * 0.54910 * 18 17 16 20 20 C 1.38368 * 120.33226 * 359.72671 * 19 18 17 21 21 C 1.37925 * 120.16638 * 359.97438 * 20 19 18 22 22 C 1.50704 * 120.08706 * 180.02562 * 21 20 19 23 23 F 1.39895 * 109.46716 * 359.97438 * 22 21 20 24 24 F 1.39893 * 109.46967 * 119.97638 * 22 21 20 25 25 F 1.39896 * 109.47172 * 239.97690 * 22 21 20 26 26 N 1.32591 * 120.70688 * 0.02562 * 13 12 11 27 27 H 0.97002 * 120.00333 * 174.24432 * 1 2 3 28 28 H 1.07991 * 120.36731 * 359.97438 * 10 9 7 29 29 H 1.08004 * 120.62697 * 180.24117 * 11 10 9 30 30 H 1.08000 * 120.28428 * 179.72338 * 12 11 10 31 31 H 1.08004 * 119.99762 * 0.02690 * 14 13 12 32 32 H 1.08004 * 119.99777 * 0.02562 * 15 14 13 33 33 H 1.07997 * 120.08835 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.91790 * 180.28160 * 18 17 16 35 35 H 1.08000 * 119.83577 * 179.70011 * 19 18 17 36 36 H 1.08001 * 119.91589 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 1.2766 2.7465 0.0006 5 1 3.0954 1.6964 1.2125 6 1 3.0953 1.6965 -1.2125 7 6 2.0075 -1.2122 0.0057 8 1 1.4681 -2.1471 0.0442 9 6 3.4202 -1.2129 -0.0387 10 6 4.1172 -2.4353 -0.0817 11 6 5.4995 -2.4240 -0.1299 12 6 6.1565 -1.2034 -0.1238 13 6 5.4082 -0.0179 -0.0747 14 6 6.1012 1.2810 -0.0674 15 6 5.3913 2.4213 -0.0199 16 6 6.0848 3.7211 -0.0132 17 6 7.4813 3.7723 -0.0503 18 6 8.1231 4.9927 -0.0495 19 6 7.3887 6.1648 -0.0006 20 6 6.0063 6.1219 0.0421 21 6 5.3500 4.9089 0.0357 22 6 3.8443 4.8643 0.0817 23 9 3.3404 6.1685 0.1270 24 9 3.3618 4.2172 -1.0609 25 9 3.4331 4.1657 1.2219 26 7 4.0835 -0.0546 -0.0337 27 1 -0.4851 -0.8358 -0.0842 28 1 3.5785 -3.3713 -0.0804 29 1 6.0564 -3.3486 -0.1673 30 1 7.2353 -1.1654 -0.1562 31 1 7.1801 1.3176 -0.1002 32 1 4.3124 2.3847 0.0133 33 1 8.0559 2.8585 -0.0845 34 1 9.2018 5.0340 -0.0828 35 1 7.8970 7.1176 0.0047 36 1 5.4398 7.0407 0.0806 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242490591.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:29 Heat of formation + Delta-G solvation = -95.746956 kcal Electronic energy + Delta-G solvation = -26554.531704 eV Core-core repulsion = 22359.934596 eV Total energy + Delta-G solvation = -4194.597108 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.45280 -48.91858 -48.87745 -40.73940 -40.25768 -36.32222 -35.38864 -33.15610 -33.05409 -32.55554 -29.94422 -27.66328 -27.00678 -25.35671 -23.69398 -23.22140 -22.41456 -20.76372 -20.38960 -19.71952 -19.69052 -19.42724 -17.85563 -17.19991 -16.77254 -16.34513 -16.32543 -15.97180 -15.78890 -15.44565 -15.36065 -15.20716 -15.07701 -15.02295 -14.91542 -14.83105 -14.30736 -14.12232 -14.07718 -13.83414 -13.54455 -13.04383 -12.80029 -12.53380 -12.22845 -12.15093 -11.87108 -11.78520 -11.54695 -11.21993 -10.53153 -10.24419 -10.10606 -9.73833 -9.32676 -8.94555 -6.89528 -0.64639 0.08472 0.53497 0.71775 1.38470 1.49231 1.54192 1.66697 1.82107 2.23610 2.54819 2.60531 2.64410 2.86626 3.23610 3.39898 3.54475 3.66353 3.81082 4.00714 4.15932 4.27044 4.34626 4.37857 4.56235 4.60268 4.64983 4.68639 4.93396 4.95193 5.09571 5.23649 5.31179 5.35530 5.40308 5.49913 5.50790 5.62743 5.82298 5.84806 5.97246 6.31699 6.56564 7.48581 7.88627 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.006004 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.157119 B = 4662.471638 C = 6422.678287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.007 3.993 3 Si 1.196 2.804 4 H -0.352 1.352 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.232 3.768 10 C -0.270 4.270 11 C -0.040 4.040 12 C -0.256 4.256 13 C 0.153 3.847 14 C -0.072 4.072 15 C -0.158 4.158 16 C -0.021 4.021 17 C -0.115 4.115 18 C -0.072 4.072 19 C -0.113 4.113 20 C -0.074 4.074 21 C -0.201 4.201 22 C 0.486 3.514 23 F -0.169 7.169 24 F -0.189 7.189 25 F -0.188 7.188 26 N -0.591 5.591 27 H 0.283 0.717 28 H 0.115 0.885 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.102 0.898 33 H 0.162 0.838 34 H 0.178 0.822 35 H 0.175 0.825 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.389 12.197 -0.326 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.208 4.208 3 Si 1.035 2.965 4 H -0.289 1.289 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.548 4.548 8 H 0.090 0.910 9 C 0.106 3.894 10 C -0.292 4.292 11 C -0.064 4.064 12 C -0.278 4.278 13 C 0.016 3.984 14 C -0.090 4.090 15 C -0.178 4.178 16 C -0.022 4.022 17 C -0.132 4.132 18 C -0.089 4.089 19 C -0.130 4.130 20 C -0.092 4.092 21 C -0.202 4.202 22 C 0.432 3.568 23 F -0.150 7.150 24 F -0.170 7.170 25 F -0.170 7.170 26 N -0.311 5.311 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.174 0.826 30 H 0.179 0.821 31 H 0.199 0.801 32 H 0.119 0.881 33 H 0.179 0.821 34 H 0.195 0.805 35 H 0.192 0.808 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 19.538 14.403 -0.214 24.274 hybrid contribution -1.367 -3.079 -0.052 3.369 sum 18.171 11.324 -0.266 21.412 Atomic orbital electron populations 1.70656 1.08337 1.32816 1.34224 1.28435 0.95847 1.07912 0.88623 0.81698 0.68743 0.67656 0.78422 1.28850 1.22096 1.22009 1.20741 0.91619 0.95629 1.46792 0.90968 1.18777 0.93696 0.88471 0.88436 1.21936 0.95808 0.97191 1.14230 1.21487 0.93035 0.98961 0.92925 1.21842 1.01026 0.91068 1.13898 1.20414 0.88718 0.94937 0.94315 1.22392 1.00487 0.88569 0.97514 1.22906 1.00521 0.93041 1.01306 1.18870 0.95220 0.90143 0.97929 1.21716 0.90723 1.01196 0.99607 1.21828 1.02549 0.90796 0.93736 1.21716 0.91836 1.00959 0.98516 1.21236 0.96693 0.95387 0.95853 1.20147 0.88344 0.97576 1.14169 1.18985 0.90962 0.73498 0.73313 1.93134 1.89431 1.36363 1.96113 1.93149 1.90288 1.81676 1.51893 1.93173 1.92279 1.79357 1.52156 1.66288 1.10092 1.28569 1.26150 0.90571 0.86685 0.82579 0.82106 0.80145 0.88081 0.82051 0.80481 0.80771 0.82936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -51.33 13.65 21.83 0.30 -51.03 16 2 C 0.01 0.46 5.52 85.27 0.47 0.93 16 3 Si 1.20 69.05 17.44 68.60 1.20 70.25 16 4 H -0.35 -20.65 7.11 99.48 0.71 -19.94 16 5 H -0.29 -16.70 6.27 99.48 0.62 -16.07 16 6 H -0.29 -16.60 6.34 99.48 0.63 -15.97 16 7 C -0.51 -30.89 9.57 23.46 0.22 -30.67 16 8 H 0.07 4.31 8.06 -2.91 -0.02 4.28 16 9 C 0.23 12.75 6.43 40.28 0.26 13.01 16 10 C -0.27 -12.37 9.83 22.91 0.23 -12.15 16 11 C -0.04 -1.47 10.14 22.38 0.23 -1.25 16 12 C -0.26 -9.05 9.85 22.86 0.23 -8.82 16 13 C 0.15 6.59 6.71 41.89 0.28 6.87 16 14 C -0.07 -2.50 9.28 23.75 0.22 -2.28 16 15 C -0.16 -6.18 8.21 23.79 0.20 -5.98 16 16 C -0.02 -0.64 5.84 -20.14 -0.12 -0.76 16 17 C -0.11 -2.18 9.41 22.56 0.21 -1.97 16 18 C -0.07 -0.87 10.03 22.23 0.22 -0.65 16 19 C -0.11 -1.44 10.04 22.34 0.22 -1.21 16 20 C -0.07 -1.49 9.42 22.23 0.21 -1.28 16 21 C -0.20 -6.01 5.40 -19.57 -0.11 -6.11 16 22 C 0.49 18.05 2.78 71.24 0.20 18.25 16 23 F -0.17 -5.38 15.98 44.97 0.72 -4.66 16 24 F -0.19 -8.08 13.43 44.97 0.60 -7.48 16 25 F -0.19 -8.05 13.55 44.97 0.61 -7.44 16 26 N -0.59 -31.48 4.17 -178.67 -0.75 -32.22 16 27 H 0.28 16.50 8.73 -92.71 -0.81 15.69 16 28 H 0.12 4.95 8.06 -2.92 -0.02 4.93 16 29 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 30 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.18 4.03 6.07 -2.91 -0.02 4.02 16 32 H 0.10 4.81 0.33 -2.91 0.00 4.80 16 33 H 0.16 2.17 6.17 -2.91 -0.02 2.15 16 34 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 35 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.15 2.52 7.15 -2.91 -0.02 2.50 16 Total: -1.00 -77.51 303.19 6.81 -70.70 By element: Atomic # 1 Polarization: -4.99 SS G_CDS: 0.95 Total: -4.03 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: 3.17 Total: -34.08 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -0.45 Total: -83.26 kcal Atomic # 9 Polarization: -21.52 SS G_CDS: 1.93 Total: -19.58 kcal Atomic # 14 Polarization: 69.05 SS G_CDS: 1.20 Total: 70.25 kcal Total: -77.51 6.81 -70.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242490591.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.042 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds