Wall clock time and date at job start Tue Mar 31 2020 12:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 C 1.50697 * 109.47026 * 119.99941 * 2 1 3 5 5 C 1.38010 * 119.94790 * 300.00000 * 4 2 1 6 6 C 1.39326 * 119.88975 * 179.97438 * 5 4 2 7 7 C 1.48371 * 120.11122 * 180.02562 * 6 5 4 8 8 C 1.39007 * 120.42271 * 129.99715 * 7 6 5 9 9 C 1.40959 * 118.13144 * 180.02562 * 8 7 6 10 10 C 1.41373 * 120.57204 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99736 * 155.74470 * 10 9 8 12 12 C 1.39894 * 120.00311 * 335.74528 * 10 9 8 13 13 N 1.30866 * 120.00023 * 343.51121 * 12 10 9 14 14 Si 1.86800 * 120.00103 * 163.51697 * 12 10 9 15 15 H 1.48502 * 109.47169 * 60.00092 * 14 12 10 16 16 H 1.48498 * 109.47284 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46944 * 299.99931 * 14 12 10 18 18 C 1.40800 * 118.84968 * 0.02562 * 9 8 7 19 19 N 1.31504 * 120.70205 * 359.97438 * 18 9 8 20 20 C 1.32157 * 122.07353 * 0.02562 * 19 18 9 21 21 F 1.35100 * 119.45831 * 179.97438 * 20 19 18 22 22 C 1.39378 * 119.78576 * 0.27652 * 6 5 4 23 23 C 1.37975 * 119.88590 * 359.43011 * 22 6 5 24 24 C 1.38422 * 119.94023 * 119.98198 * 4 2 1 25 25 Cl 1.73595 * 119.89575 * 359.97438 * 24 4 2 26 26 H 1.09006 * 109.46920 * 60.00266 * 1 2 3 27 27 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47167 * 300.00068 * 1 2 3 29 29 H 1.09000 * 109.47110 * 240.00331 * 2 1 3 30 30 H 1.08995 * 109.47165 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47194 * 300.00619 * 3 2 1 32 32 H 1.09003 * 109.46637 * 59.99689 * 3 2 1 33 33 H 1.07999 * 120.05500 * 359.97438 * 5 4 2 34 34 H 1.08002 * 120.93451 * 0.05655 * 8 7 6 35 35 H 0.97001 * 120.00053 * 180.02562 * 13 12 10 36 36 H 1.08009 * 119.64790 * 179.72492 * 18 9 8 37 37 H 1.07998 * 120.05548 * 179.71828 * 22 6 5 38 38 H 1.08003 * 119.94503 * 180.29609 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6983 -0.2379 2.4834 6 6 2.1629 -0.8960 3.6202 7 6 1.8063 -0.3926 4.9696 8 6 1.2917 -1.2562 5.9297 9 6 0.9689 -0.7264 7.1954 10 6 0.4418 -1.5582 8.2098 11 1 0.5576 -1.2833 9.2479 12 6 -0.2297 -2.7372 7.8692 13 7 -0.6550 -2.9175 6.6448 14 14 -0.5195 -4.0539 9.1621 15 1 -1.3280 -3.4885 10.2720 16 1 -1.2475 -5.1953 8.5517 17 1 0.7860 -4.5245 9.6905 18 6 1.1795 0.6456 7.4315 19 7 1.6691 1.4215 6.4895 20 6 1.9828 0.9590 5.2919 21 9 2.4820 1.8037 4.3632 22 6 2.9681 -2.0256 3.4857 23 6 3.2916 -2.4937 2.2288 24 6 2.8278 -1.8359 1.1020 25 17 3.2436 -2.4260 -0.4767 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.0777 0.6404 2.5825 34 1 1.1438 -2.3037 5.7121 35 1 -1.1210 -3.7349 6.4086 36 1 0.9324 1.0659 8.3953 37 1 3.3344 -2.5364 4.3640 38 1 3.9116 -3.3718 2.1235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244438615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:49 Heat of formation + Delta-G solvation = -24.448951 kcal Electronic energy + Delta-G solvation = -23819.756432 eV Core-core repulsion = 20180.047718 eV Total energy + Delta-G solvation = -3639.708714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.64009 -39.57529 -38.25011 -36.31463 -35.38446 -34.25868 -32.25422 -30.47574 -29.71156 -28.38593 -27.06189 -25.61273 -23.48726 -23.16133 -21.87880 -20.87405 -19.57120 -17.63170 -16.81191 -16.56111 -16.12659 -15.61918 -15.26039 -14.84204 -14.67782 -13.95186 -13.83461 -13.74832 -13.54376 -13.28825 -12.65947 -12.58371 -12.38724 -12.19556 -12.12785 -11.96690 -11.86422 -11.70218 -11.44102 -11.30250 -11.27006 -11.17953 -11.02672 -10.77863 -10.56879 -10.32962 -10.11935 -9.55835 -8.93489 -8.57307 -8.50789 -8.06950 -7.55455 -7.08409 -4.70346 1.26049 1.56870 2.29091 2.31160 2.61343 2.91240 2.92428 2.98893 3.69192 3.90461 4.30051 4.69288 4.85584 4.98423 5.16082 5.25974 5.28439 5.29951 5.46181 5.56785 5.63046 5.69437 5.88727 5.90118 5.91781 6.03519 6.07905 6.23878 6.27793 6.31133 6.41234 6.46291 6.57390 6.63982 6.82814 6.85847 6.96153 7.07544 7.37157 7.54269 7.68203 8.13128 8.39212 8.41063 9.14176 9.83039 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.004120 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.337499 B = 6795.243099 C = 7845.652770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.143 4.143 4 C -0.068 4.068 5 C -0.086 4.086 6 C -0.002 4.002 7 C -0.106 4.106 8 C -0.095 4.095 9 C 0.055 3.945 10 C -0.439 4.439 11 H 0.089 0.911 12 C 0.073 3.927 13 N -0.783 5.783 14 Si 0.916 3.084 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.260 1.260 18 C 0.012 3.988 19 N -0.488 5.488 20 C 0.164 3.836 21 F -0.145 7.145 22 C -0.100 4.100 23 C -0.109 4.109 24 C -0.044 4.044 25 Cl -0.083 7.083 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.288 0.712 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 -1.642 -9.672 10.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 C -0.200 4.200 4 C -0.069 4.069 5 C -0.104 4.104 6 C -0.003 4.003 7 C -0.110 4.110 8 C -0.120 4.120 9 C 0.050 3.950 10 C -0.468 4.468 11 H 0.107 0.893 12 C -0.147 4.147 13 N -0.407 5.407 14 Si 0.740 3.260 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.185 1.185 18 C -0.150 4.150 19 N -0.200 5.200 20 C 0.010 3.990 21 F -0.124 7.124 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.070 4.070 25 Cl -0.055 7.055 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.868 -0.953 -9.856 10.309 hybrid contribution -0.250 -1.440 0.126 1.467 sum 2.618 -2.393 -9.731 10.357 Atomic orbital electron populations 1.21848 0.94124 1.02093 1.01995 1.20224 0.96207 0.96241 0.95382 1.21847 1.01243 0.94909 1.02042 1.19548 0.97419 0.94490 0.95412 1.20991 0.99557 0.99731 0.90105 1.18860 0.94883 0.94025 0.92527 1.19115 1.05338 0.92837 0.93678 1.21749 0.98325 0.99405 0.92513 1.18483 0.90982 0.92304 0.93228 1.19553 1.29291 1.03279 0.94701 0.89343 1.26023 0.93173 0.99005 0.96510 1.69760 1.25358 1.26016 1.19589 0.86209 0.79731 0.79275 0.80808 1.18615 1.20055 1.18482 1.22319 1.05811 0.89979 0.96868 1.66285 1.11978 1.41297 1.00440 1.17500 1.09882 0.84869 0.86731 1.91406 1.86079 1.71875 1.63085 1.21185 0.97901 0.96053 0.96729 1.20861 1.00884 1.00122 0.90879 1.20724 1.03053 0.97723 0.85510 1.98312 1.92559 1.87855 1.26744 0.92438 0.92514 0.92177 0.89703 0.92558 0.92474 0.92054 0.85260 0.84200 0.90042 0.84350 0.85033 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.01 37.16 0.33 -1.40 16 2 C -0.06 -0.80 2.99 -91.77 -0.27 -1.07 16 3 C -0.14 -1.73 9.01 37.16 0.33 -1.39 16 4 C -0.07 -1.05 4.78 -104.64 -0.50 -1.55 16 5 C -0.09 -1.51 7.53 -39.26 -0.30 -1.81 16 6 C 0.00 -0.04 5.33 -104.90 -0.56 -0.60 16 7 C -0.11 -2.37 5.48 -104.75 -0.57 -2.95 16 8 C -0.09 -2.23 8.28 -38.27 -0.32 -2.55 16 9 C 0.05 1.32 5.59 -106.71 -0.60 0.72 16 10 C -0.44 -10.26 9.08 -37.77 -0.34 -10.60 16 11 H 0.09 1.94 7.90 -52.48 -0.41 1.52 16 12 C 0.07 1.62 5.19 -17.34 -0.09 1.53 16 13 N -0.78 -18.12 10.90 55.54 0.61 -17.52 16 14 Si 0.92 16.63 29.59 -169.99 -5.03 11.60 16 15 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 16 H -0.28 -4.93 7.11 56.52 0.40 -4.53 16 17 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 18 C 0.01 0.27 10.96 -16.72 -0.18 0.09 16 19 N -0.49 -11.89 10.33 -12.58 -0.13 -12.02 16 20 C 0.16 3.88 8.30 -16.73 -0.14 3.74 16 21 F -0.14 -3.26 15.90 2.25 0.04 -3.23 16 22 C -0.10 -1.72 9.53 -39.25 -0.37 -2.09 16 23 C -0.11 -1.64 9.81 -39.59 -0.39 -2.02 16 24 C -0.04 -0.65 6.32 -39.43 -0.25 -0.90 16 25 Cl -0.08 -1.08 26.98 -51.86 -1.40 -2.48 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 29 H 0.08 1.04 6.15 -51.93 -0.32 0.72 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 33 H 0.13 2.31 6.82 -52.49 -0.36 1.95 16 34 H 0.14 3.32 6.20 -52.49 -0.33 3.00 16 35 H 0.29 6.09 8.30 -40.82 -0.34 5.76 16 36 H 0.14 2.92 8.06 -52.48 -0.42 2.50 16 37 H 0.13 2.14 8.05 -52.49 -0.42 1.72 16 38 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -25.20 339.08 -9.30 -34.50 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.28 Total: 6.87 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -4.21 Total: -22.85 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: 0.48 Total: -29.53 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.23 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.40 Total: -2.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -25.20 -9.30 -34.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244438615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.055 kcal (2) G-P(sol) polarization free energy of solvation -25.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds