Wall clock time and date at job start Tue Mar 31 2020 12:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 C 1.50697 * 109.47026 * 119.99941 * 2 1 3 5 5 C 1.38010 * 119.94790 * 300.00000 * 4 2 1 6 6 C 1.39326 * 119.88975 * 179.97438 * 5 4 2 7 7 C 1.48371 * 120.11122 * 180.02562 * 6 5 4 8 8 C 1.39007 * 120.42271 * 129.99715 * 7 6 5 9 9 C 1.40959 * 118.13144 * 180.02562 * 8 7 6 10 10 C 1.41373 * 120.57204 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99736 * 155.74470 * 10 9 8 12 12 C 1.39894 * 120.00311 * 335.74528 * 10 9 8 13 13 N 1.30866 * 120.00023 * 343.51121 * 12 10 9 14 14 Si 1.86800 * 120.00103 * 163.51697 * 12 10 9 15 15 H 1.48502 * 109.47169 * 60.00092 * 14 12 10 16 16 H 1.48498 * 109.47284 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46944 * 299.99931 * 14 12 10 18 18 C 1.40800 * 118.84968 * 0.02562 * 9 8 7 19 19 N 1.31504 * 120.70205 * 359.97438 * 18 9 8 20 20 C 1.32157 * 122.07353 * 0.02562 * 19 18 9 21 21 F 1.35100 * 119.45831 * 179.97438 * 20 19 18 22 22 C 1.39378 * 119.78576 * 0.27652 * 6 5 4 23 23 C 1.37975 * 119.88590 * 359.43011 * 22 6 5 24 24 C 1.38422 * 119.94023 * 119.98198 * 4 2 1 25 25 Cl 1.73595 * 119.89575 * 359.97438 * 24 4 2 26 26 H 1.09006 * 109.46920 * 60.00266 * 1 2 3 27 27 H 1.09000 * 109.46870 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47167 * 300.00068 * 1 2 3 29 29 H 1.09000 * 109.47110 * 240.00331 * 2 1 3 30 30 H 1.08995 * 109.47165 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47194 * 300.00619 * 3 2 1 32 32 H 1.09003 * 109.46637 * 59.99689 * 3 2 1 33 33 H 1.07999 * 120.05500 * 359.97438 * 5 4 2 34 34 H 1.08002 * 120.93451 * 0.05655 * 8 7 6 35 35 H 0.97001 * 120.00053 * 180.02562 * 13 12 10 36 36 H 1.08009 * 119.64790 * 179.72492 * 18 9 8 37 37 H 1.07998 * 120.05548 * 179.71828 * 22 6 5 38 38 H 1.08003 * 119.94503 * 180.29609 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6983 -0.2379 2.4834 6 6 2.1629 -0.8960 3.6202 7 6 1.8063 -0.3926 4.9696 8 6 1.2917 -1.2562 5.9297 9 6 0.9689 -0.7264 7.1954 10 6 0.4418 -1.5582 8.2098 11 1 0.5576 -1.2833 9.2479 12 6 -0.2297 -2.7372 7.8692 13 7 -0.6550 -2.9175 6.6448 14 14 -0.5195 -4.0539 9.1621 15 1 -1.3280 -3.4885 10.2720 16 1 -1.2475 -5.1953 8.5517 17 1 0.7860 -4.5245 9.6905 18 6 1.1795 0.6456 7.4315 19 7 1.6691 1.4215 6.4895 20 6 1.9828 0.9590 5.2919 21 9 2.4820 1.8037 4.3632 22 6 2.9681 -2.0256 3.4857 23 6 3.2916 -2.4937 2.2288 24 6 2.8278 -1.8359 1.1020 25 17 3.2436 -2.4260 -0.4767 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.0777 0.6404 2.5825 34 1 1.1438 -2.3037 5.7121 35 1 -1.1210 -3.7349 6.4086 36 1 0.9324 1.0659 8.3953 37 1 3.3344 -2.5364 4.3640 38 1 3.9116 -3.3718 2.1235 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244438615.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:47 Heat of formation + Delta-G solvation = -33.545032 kcal Electronic energy + Delta-G solvation = -23820.150868 eV Core-core repulsion = 20180.047718 eV Total energy + Delta-G solvation = -3640.103150 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -49.44121 -40.93624 -39.92410 -37.47958 -36.53180 -36.02066 -33.77999 -32.24283 -30.98478 -29.88466 -28.02668 -27.40431 -24.82409 -24.66811 -23.56340 -22.36117 -20.81610 -19.31067 -18.54196 -17.95455 -17.80627 -17.07618 -16.80387 -16.37130 -16.24060 -15.30963 -15.05493 -14.94059 -14.85194 -14.65021 -14.29597 -14.10621 -13.88939 -13.67804 -13.65218 -13.25544 -13.19752 -13.08382 -12.89156 -12.81035 -12.50211 -12.41447 -12.24343 -12.08264 -11.83746 -11.69786 -11.31868 -11.23700 -10.52249 -10.32781 -9.85950 -9.74688 -9.15766 -8.79431 -6.52041 -0.16176 0.28439 0.62050 0.84261 1.10030 1.42182 1.50916 1.55260 2.16678 2.49589 2.64406 3.24058 3.44455 3.57655 3.63337 3.79138 4.08488 4.20805 4.25612 4.26464 4.36675 4.42297 4.62298 4.68298 4.77161 4.81765 4.87514 4.92967 4.95153 5.02674 5.09608 5.12844 5.18525 5.24388 5.34064 5.46474 5.50521 5.62069 5.70205 5.77797 5.90049 6.34130 6.59211 6.63184 7.30599 8.14419 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.004120 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.337499 B = 6795.243099 C = 7845.652770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.066 4.066 5 C -0.093 4.093 6 C -0.034 4.034 7 C -0.094 4.094 8 C -0.113 4.113 9 C 0.036 3.964 10 C -0.458 4.458 11 H 0.098 0.902 12 C 0.038 3.962 13 N -0.808 5.808 14 Si 0.989 3.011 15 H -0.256 1.256 16 H -0.269 1.269 17 H -0.256 1.256 18 C -0.003 4.003 19 N -0.503 5.503 20 C 0.137 3.863 21 F -0.143 7.143 22 C -0.106 4.106 23 C -0.101 4.101 24 C -0.044 4.044 25 Cl -0.057 7.057 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.297 0.703 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 -3.257 -10.794 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 C -0.199 4.199 4 C -0.067 4.067 5 C -0.111 4.111 6 C -0.035 4.035 7 C -0.098 4.098 8 C -0.138 4.138 9 C 0.031 3.969 10 C -0.487 4.487 11 H 0.116 0.884 12 C -0.180 4.180 13 N -0.432 5.432 14 Si 0.809 3.191 15 H -0.180 1.180 16 H -0.194 1.194 17 H -0.181 1.181 18 C -0.165 4.165 19 N -0.215 5.215 20 C -0.016 4.016 21 F -0.123 7.123 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.070 4.070 25 Cl -0.028 7.028 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.108 0.892 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.963 -2.549 -10.999 11.673 hybrid contribution -0.281 -0.970 0.355 1.070 sum 2.682 -3.518 -10.644 11.527 Atomic orbital electron populations 1.21843 0.93535 1.02037 1.02510 1.20311 0.96683 0.96529 0.94393 1.21837 1.01086 0.94433 1.02496 1.19797 0.96849 0.94607 0.95447 1.20912 0.99910 0.99547 0.90733 1.18885 0.97300 0.95851 0.91496 1.19298 1.03436 0.92138 0.94921 1.21726 0.99717 0.99311 0.93037 1.18809 0.91322 0.92841 0.93922 1.19911 1.29534 1.04156 0.95050 0.88352 1.26881 0.92214 1.00445 0.98465 1.69811 1.25235 1.26852 1.21338 0.85120 0.79712 0.76309 0.77998 1.18003 1.19351 1.18057 1.22591 1.06360 0.90031 0.97489 1.66255 1.12326 1.41915 1.00958 1.17720 1.11311 0.85668 0.86886 1.91387 1.86151 1.71837 1.62954 1.21249 0.97792 0.95434 0.97986 1.21127 1.00354 1.00590 0.89896 1.20888 1.02073 0.97231 0.86821 1.98323 1.92249 1.87444 1.24774 0.90030 0.92855 0.93590 0.88488 0.92783 0.90068 0.93574 0.86403 0.84790 0.89216 0.82660 0.84803 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.01 71.98 0.65 -2.59 16 2 C -0.06 -1.47 2.99 -11.54 -0.03 -1.50 16 3 C -0.14 -3.21 9.01 71.98 0.65 -2.56 16 4 C -0.07 -1.98 4.78 -19.88 -0.10 -2.08 16 5 C -0.09 -3.34 7.53 22.48 0.17 -3.17 16 6 C -0.03 -1.37 5.33 -20.04 -0.11 -1.48 16 7 C -0.09 -4.39 5.48 -19.95 -0.11 -4.50 16 8 C -0.11 -5.50 8.28 23.12 0.19 -5.31 16 9 C 0.04 1.78 5.59 -21.21 -0.12 1.66 16 10 C -0.46 -21.58 9.08 23.44 0.21 -21.36 16 11 H 0.10 4.29 7.90 -2.91 -0.02 4.27 16 12 C 0.04 1.67 5.19 85.24 0.44 2.12 16 13 N -0.81 -37.52 10.90 21.82 0.24 -37.28 16 14 Si 0.99 33.10 29.59 68.60 2.03 35.13 16 15 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 16 H -0.27 -8.66 7.11 99.48 0.71 -7.95 16 17 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 18 C 0.00 -0.15 10.96 85.37 0.94 0.79 16 19 N -0.50 -25.34 10.33 -193.72 -2.00 -27.34 16 20 C 0.14 6.75 8.30 85.09 0.71 7.46 16 21 F -0.14 -6.72 15.90 44.97 0.72 -6.01 16 22 C -0.11 -3.64 9.53 22.48 0.21 -3.42 16 23 C -0.10 -2.88 9.81 22.26 0.22 -2.66 16 24 C -0.04 -1.23 6.32 22.37 0.14 -1.08 16 25 Cl -0.06 -1.30 26.98 -2.72 -0.07 -1.38 16 26 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.17 7.38 -2.39 -0.02 1.15 16 29 H 0.10 2.11 6.15 -2.39 -0.01 2.10 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.18 7.38 -2.39 -0.02 1.17 16 33 H 0.12 4.43 6.82 -2.91 -0.02 4.41 16 34 H 0.13 6.60 6.20 -2.91 -0.02 6.58 16 35 H 0.30 12.43 8.30 -92.71 -0.77 11.66 16 36 H 0.16 6.72 8.06 -2.91 -0.02 6.69 16 37 H 0.13 4.40 8.05 -2.91 -0.02 4.38 16 38 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -54.69 339.08 6.06 -48.63 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 1.09 Total: 27.95 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 4.06 Total: -39.70 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -1.76 Total: -64.62 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.72 Total: -6.01 kcal Atomic # 14 Polarization: 33.10 SS G_CDS: 2.03 Total: 35.13 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.38 kcal Total: -54.69 6.06 -48.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244438615.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.084 kcal (2) G-P(sol) polarization free energy of solvation -54.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds