Wall clock time and date at job start Tue Mar 31 2020 12:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 O 1.42897 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.35715 * 117.00099 * 179.97438 * 4 3 2 6 6 C 1.38727 * 119.60868 * 179.97438 * 5 4 3 7 7 C 1.39533 * 118.97665 * 180.02562 * 6 5 4 8 8 C 1.48347 * 120.88236 * 179.97438 * 7 6 5 9 9 C 1.39977 * 119.98117 * 359.97438 * 8 7 6 10 10 N 1.32197 * 120.29825 * 180.02562 * 9 8 7 11 11 C 1.31876 * 120.27991 * 359.72454 * 10 9 8 12 12 C 1.40839 * 119.95021 * 0.55188 * 11 10 9 13 13 C 1.41350 * 120.14494 * 179.73146 * 12 11 10 14 14 H 1.08007 * 119.99855 * 204.94283 * 13 12 11 15 15 C 1.40046 * 120.00365 * 24.94272 * 13 12 11 16 16 N 1.30735 * 119.99589 * 17.49026 * 15 13 12 17 17 Si 1.86796 * 120.00670 * 197.49193 * 15 13 12 18 18 H 1.48498 * 109.47108 * 265.18539 * 17 15 13 19 19 H 1.48505 * 109.46576 * 25.18104 * 17 15 13 20 20 H 1.48500 * 109.47238 * 145.18091 * 17 15 13 21 21 N 1.32508 * 119.97784 * 179.97438 * 8 7 6 22 22 C 1.40021 * 118.23353 * 0.24789 * 7 6 5 23 23 Cl 1.73599 * 120.44242 * 179.75243 * 22 7 6 24 24 C 1.37991 * 119.11675 * 359.52575 * 22 7 6 25 25 N 1.31991 * 120.93821 * 0.49072 * 24 22 7 26 26 H 1.08999 * 109.47492 * 300.00219 * 1 2 3 27 27 H 1.09006 * 109.46939 * 60.00280 * 1 2 3 28 28 H 1.09004 * 109.47542 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47492 * 239.99781 * 2 1 3 30 30 H 1.09004 * 109.47231 * 119.99272 * 2 1 3 31 31 H 1.09002 * 109.47550 * 59.99598 * 3 2 1 32 32 H 1.09006 * 109.46927 * 299.99727 * 3 2 1 33 33 H 1.08001 * 120.51360 * 0.02585 * 6 5 4 34 34 H 1.08003 * 119.85380 * 0.02562 * 9 8 7 35 35 H 1.07992 * 120.02601 * 180.25888 * 11 10 9 36 36 H 0.97000 * 120.00100 * 179.97438 * 16 15 13 37 37 H 1.07997 * 119.53436 * 180.20206 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0851 2.6517 0.0001 6 6 5.4709 2.7149 0.0012 7 6 6.0906 3.9650 0.0013 8 6 7.5695 4.0818 0.0030 9 6 8.3622 2.9281 0.0051 10 7 9.6806 3.0249 0.0072 11 6 10.2605 4.2093 0.0017 12 6 9.4736 5.3774 0.0055 13 6 10.0908 6.6491 0.0054 14 1 9.5647 7.5047 0.4025 15 6 11.3845 6.7996 -0.5095 16 7 11.8898 5.8781 -1.2871 17 14 12.3880 8.3169 -0.0852 18 1 12.2224 9.3346 -1.1539 19 1 11.9177 8.8757 1.2077 20 1 13.8217 7.9465 0.0278 21 7 8.1392 5.2782 0.0025 22 6 5.2795 5.1064 0.0056 23 17 5.9900 6.6903 0.0123 24 6 3.9079 4.9555 -0.0004 25 7 3.3572 3.7559 -0.0004 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 6.0610 1.8104 0.0020 34 1 7.8947 1.9546 0.0051 35 1 11.3378 4.2836 -0.0008 36 1 12.7856 5.9825 -1.6440 37 1 3.2760 5.8312 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244606118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:52 Heat of formation + Delta-G solvation = 6.761347 kcal Electronic energy + Delta-G solvation = -23069.415490 eV Core-core repulsion = 19450.980117 eV Total energy + Delta-G solvation = -3618.435372 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87956 -40.89497 -39.19950 -37.19432 -36.16345 -35.03968 -34.81571 -33.86625 -31.38979 -31.02395 -28.23598 -27.46679 -25.76581 -24.88806 -23.51712 -22.99653 -22.26964 -19.97628 -18.86013 -18.44831 -17.85382 -17.46879 -17.34116 -16.99599 -16.65930 -15.95311 -15.71614 -15.45772 -15.11623 -15.08471 -14.59451 -14.29478 -13.86231 -13.48793 -13.38197 -13.15795 -13.04418 -12.92639 -12.92197 -12.75102 -12.44704 -12.12440 -12.03736 -11.97179 -11.87001 -11.48822 -11.41028 -11.30285 -10.88252 -10.76190 -9.60165 -9.37362 -9.21073 -8.89169 -6.67958 -0.55237 -0.07825 0.68947 1.04195 1.29612 1.40289 1.49243 1.57616 1.88230 2.16354 2.46835 2.67228 3.08257 3.31200 3.59149 3.67127 3.77672 4.00147 4.00376 4.03305 4.20911 4.31288 4.37520 4.52632 4.58131 4.59680 4.66377 4.81899 4.83476 4.94303 5.05857 5.13601 5.18932 5.20856 5.27051 5.38499 5.63874 6.11407 6.14770 6.48903 6.51696 6.57396 7.13481 7.61291 8.12848 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.003054 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.139243 B = 9167.549999 C =10117.232794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.065 3.935 4 O -0.309 6.309 5 C 0.322 3.678 6 C -0.167 4.167 7 C 0.045 3.955 8 C 0.110 3.890 9 C -0.083 4.083 10 N -0.453 5.453 11 C -0.005 4.005 12 C 0.198 3.802 13 C -0.441 4.441 14 H 0.087 0.913 15 C 0.040 3.960 16 N -0.808 5.808 17 Si 0.997 3.003 18 H -0.261 1.261 19 H -0.256 1.256 20 H -0.259 1.259 21 N -0.497 5.497 22 C -0.117 4.117 23 Cl -0.025 7.025 24 C 0.157 3.843 25 N -0.527 5.527 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.301 0.699 37 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.651 -4.315 1.779 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.010 4.010 4 O -0.216 6.216 5 C 0.143 3.857 6 C -0.188 4.188 7 C 0.035 3.965 8 C -0.034 4.034 9 C -0.241 4.241 10 N -0.165 5.165 11 C -0.175 4.175 12 C 0.070 3.930 13 C -0.474 4.474 14 H 0.105 0.895 15 C -0.179 4.179 16 N -0.433 5.433 17 Si 0.816 3.184 18 H -0.185 1.185 19 H -0.180 1.180 20 H -0.182 1.182 21 N -0.216 5.216 22 C -0.147 4.147 23 Cl 0.004 6.996 24 C 0.001 3.999 25 N -0.252 5.252 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.180 0.820 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.112 0.888 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.219 -4.647 1.636 16.951 hybrid contribution 1.556 0.783 -0.103 1.745 sum -14.663 -3.865 1.532 15.241 Atomic orbital electron populations 1.21666 0.92704 1.03234 1.02620 1.21551 0.97293 0.93423 1.03659 1.22966 0.75770 0.99586 1.02670 1.86231 1.24392 1.23502 1.87492 1.19595 0.88742 0.85181 0.92135 1.21115 0.92393 0.98083 1.07257 1.18698 0.90848 0.92239 0.94696 1.20557 0.92578 0.91742 0.98482 1.23137 0.89944 0.98554 1.12426 1.67918 1.11749 1.28109 1.08752 1.23782 1.01153 0.88115 1.04466 1.19723 0.88072 0.95594 0.89624 1.19563 0.99084 0.94024 1.34709 0.89520 1.26932 0.97827 1.01862 0.91278 1.69740 1.17548 1.35350 1.20685 0.84954 0.77172 0.76236 0.80012 1.18520 1.17981 1.18246 1.69479 1.11056 1.23444 1.17653 1.22176 0.94486 0.88669 1.09384 1.98405 1.83791 1.20973 1.96410 1.22698 0.89805 0.95008 0.92429 1.67437 1.39823 0.98261 1.19662 0.92012 0.92061 0.90649 0.90890 0.90835 0.91440 0.91501 0.81963 0.81853 0.83092 0.88787 0.78404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.78 6.30 30.59 0.19 -1.58 16 3 C 0.06 1.27 5.31 71.98 0.38 1.66 16 4 O -0.31 -8.02 10.11 -90.36 -0.91 -8.93 16 5 C 0.32 9.47 7.48 84.75 0.63 10.10 16 6 C -0.17 -5.36 9.43 22.70 0.21 -5.15 16 7 C 0.04 1.70 5.91 -19.84 -0.12 1.58 16 8 C 0.11 5.08 6.74 42.16 0.28 5.37 16 9 C -0.08 -3.78 10.64 85.06 0.90 -2.87 16 10 N -0.45 -23.06 10.47 -192.08 -2.01 -25.07 16 11 C -0.01 -0.28 9.88 85.32 0.84 0.56 16 12 C 0.20 10.70 6.41 40.24 0.26 10.95 16 13 C -0.44 -22.84 9.29 23.47 0.22 -22.62 16 14 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 15 C 0.04 1.88 5.14 85.29 0.44 2.32 16 16 N -0.81 -39.34 10.96 21.84 0.24 -39.10 16 17 Si 1.00 35.25 29.59 68.60 2.03 37.28 16 18 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 19 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 20 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 21 N -0.50 -25.34 7.16 -177.64 -1.27 -26.61 16 22 C -0.12 -4.07 6.37 22.64 0.14 -3.93 16 23 Cl -0.02 -0.94 25.90 -2.72 -0.07 -1.01 16 24 C 0.16 4.38 10.97 84.61 0.93 5.31 16 25 N -0.53 -14.86 9.19 -309.08 -2.84 -17.70 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 32 H 0.07 1.31 8.10 -2.38 -0.02 1.29 16 33 H 0.16 4.71 6.32 -2.91 -0.02 4.69 16 34 H 0.16 6.18 6.28 -2.91 -0.02 6.17 16 35 H 0.15 8.16 6.17 -2.91 -0.02 8.14 16 36 H 0.30 12.95 8.29 -92.71 -0.77 12.18 16 37 H 0.20 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -60.74 334.42 2.31 -58.43 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.12 Total: 21.84 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 6.04 Total: 0.86 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -5.88 Total: -108.47 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.91 Total: -8.93 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.01 kcal Total: -60.74 2.31 -58.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244606118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.187 kcal (2) G-P(sol) polarization free energy of solvation -60.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds