Wall clock time and date at job start Tue Mar 31 2020 12:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46650 * 2 1 4 4 N 1.46910 * 109.46693 * 183.44808 * 3 2 1 5 5 C 1.46907 * 110.99652 * 299.69418 * 4 3 2 6 6 C 1.50698 * 109.46911 * 288.57363 * 5 4 3 7 7 H 1.07995 * 120.00574 * 4.05294 * 6 5 4 8 8 C 1.37877 * 119.99919 * 184.04858 * 6 5 4 9 9 N 1.31517 * 119.99870 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00264 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47420 * 90.00283 * 10 8 6 12 12 H 1.48503 * 109.47389 * 210.00090 * 10 8 6 13 13 H 1.48502 * 109.47254 * 330.00310 * 10 8 6 14 14 C 1.46889 * 111.00292 * 63.64832 * 4 3 2 15 15 C 1.50703 * 109.47412 * 76.25426 * 14 4 3 16 16 C 1.38231 * 119.96498 * 96.43172 * 15 14 4 17 17 C 1.38650 * 120.02018 * 179.97438 * 16 15 14 18 18 O 1.35973 * 120.01908 * 180.02562 * 17 16 15 19 19 C 1.38794 * 119.95447 * 0.02562 * 17 16 15 20 20 Cl 1.73604 * 120.03493 * 179.97438 * 19 17 16 21 21 C 1.38400 * 119.92938 * 359.97438 * 19 17 16 22 22 F 1.35102 * 120.00977 * 180.02562 * 21 19 17 23 23 C 1.38366 * 119.96187 * 276.16169 * 15 14 4 24 24 F 1.35098 * 119.97897 * 359.97438 * 23 15 14 25 25 H 1.08993 * 109.47354 * 59.99588 * 1 2 3 26 26 H 1.08994 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46778 * 299.99783 * 1 2 3 28 28 H 1.09001 * 109.46801 * 240.00610 * 2 1 3 29 29 H 1.08993 * 109.47794 * 119.99777 * 2 1 3 30 30 H 1.08991 * 109.47244 * 63.44823 * 3 2 1 31 31 H 1.08997 * 109.47088 * 303.43861 * 3 2 1 32 32 H 1.08992 * 109.46873 * 48.57380 * 5 4 3 33 33 H 1.08998 * 109.46805 * 168.57519 * 5 4 3 34 34 H 0.97002 * 120.00173 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.47236 * 196.25206 * 14 4 3 36 36 H 1.08998 * 109.47399 * 316.25354 * 14 4 3 37 37 H 1.07999 * 119.98499 * 359.95453 * 16 15 14 38 38 H 0.96706 * 113.99497 * 90.00236 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5066 1.4434 -0.0833 5 6 4.0993 0.7406 1.0625 6 6 3.9266 1.5733 2.3066 7 1 3.3698 2.4976 2.2648 8 6 4.4794 1.1549 3.4984 9 7 5.1579 0.0294 3.5493 10 14 4.2647 2.1865 5.0407 11 1 3.0310 1.7641 5.7512 12 1 5.4381 1.9963 5.9309 13 1 4.1544 3.6194 4.6665 14 6 3.9622 0.8598 -1.3519 15 6 3.7632 1.8572 -2.4640 16 6 4.8139 2.6591 -2.8685 17 6 4.6322 3.5768 -3.8919 18 8 5.6660 4.3652 -4.2901 19 6 3.3944 3.6900 -4.5095 20 17 3.1644 4.8387 -5.7906 21 6 2.3438 2.8861 -4.1029 22 9 1.1383 2.9946 -4.7033 23 6 2.5303 1.9654 -3.0828 24 9 1.5063 1.1765 -2.6900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5137 0.8899 30 1 1.7279 1.9382 0.9192 31 1 1.6271 1.9739 -0.8575 32 1 3.6021 -0.2200 1.1962 33 1 5.1613 0.5776 0.8789 34 1 5.5471 -0.2648 4.3877 35 1 5.0196 0.6063 -1.2763 36 1 3.3870 -0.0412 -1.5648 37 1 5.7766 2.5710 -2.3870 38 1 6.2039 3.9815 -4.9963 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250406370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:51 Heat of formation + Delta-G solvation = -126.120522 kcal Electronic energy + Delta-G solvation = -25171.780989 eV Core-core repulsion = 21096.894239 eV Total energy + Delta-G solvation = -4074.886749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.70385 -49.78073 -40.99030 -39.24334 -37.75220 -37.48012 -34.83704 -33.83927 -32.26739 -30.61328 -29.09910 -27.67452 -25.87127 -24.13216 -23.82531 -23.22486 -21.03257 -19.53291 -18.99700 -18.88420 -18.35335 -17.87119 -17.69172 -16.83227 -16.61024 -16.36324 -16.07011 -15.98122 -15.56070 -15.35187 -15.27888 -14.90913 -14.39008 -14.21961 -14.01527 -13.66384 -13.31569 -13.07120 -12.92899 -12.81510 -12.59709 -12.51758 -12.41000 -12.30122 -12.22065 -12.17350 -11.89585 -11.76003 -11.31930 -11.25121 -10.55765 -9.97682 -9.72572 -8.94694 -8.16086 -6.23698 -0.44957 -0.37483 0.72119 1.42338 1.43229 1.54264 1.93174 2.39559 2.43485 2.85576 3.16038 3.19899 3.33262 3.51220 3.56637 4.02942 4.08983 4.12736 4.22095 4.28399 4.46011 4.57467 4.63344 4.70750 4.81464 4.87946 4.99004 5.04333 5.13560 5.16736 5.32101 5.35108 5.41510 5.50127 5.70087 6.09513 6.34103 6.60665 6.64912 6.90404 7.44659 8.93968 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.016135 B = 0.003886 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.948911 B = 7203.477764 C = 8219.393189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.152 4.152 3 C 0.062 3.938 4 N -0.535 5.535 5 C 0.205 3.795 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.081 3.919 15 C -0.048 4.048 16 C -0.092 4.092 17 C 0.156 3.844 18 O -0.480 6.480 19 C -0.090 4.090 20 Cl -0.023 7.023 21 C 0.083 3.917 22 F -0.121 7.121 23 C 0.064 3.936 24 F -0.121 7.121 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.073 0.927 32 H -0.018 1.018 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.171 0.829 38 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 4.439 -19.108 19.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.191 4.191 3 C -0.066 4.066 4 N -0.257 5.257 5 C 0.079 3.921 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.190 4.190 9 N -0.572 5.572 10 Si 0.784 3.216 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.193 1.193 14 C -0.047 4.047 15 C -0.050 4.050 16 C -0.112 4.112 17 C 0.109 3.891 18 O -0.295 6.295 19 C -0.119 4.119 20 Cl 0.006 6.994 21 C 0.062 3.938 22 F -0.099 7.099 23 C 0.043 3.957 24 F -0.099 7.099 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.000 1.000 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.189 0.811 38 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -2.166 5.285 -18.682 19.536 hybrid contribution -0.601 -0.910 0.549 1.221 sum -2.767 4.375 -18.134 18.858 Atomic orbital electron populations 1.21593 0.94225 1.01884 1.01718 1.22012 0.97599 0.98677 1.00807 1.22184 0.87393 0.95732 1.01327 1.62283 1.07625 1.54639 1.01196 1.19499 0.93282 0.91801 0.87502 1.21407 1.33020 1.07239 0.93765 0.92640 1.25730 0.95021 0.96286 1.02013 1.70051 1.36663 1.23040 1.27465 0.85543 0.77614 0.79268 0.79163 1.20213 1.20768 1.19293 1.21119 1.02466 0.93384 0.87708 1.19779 0.90977 0.98413 0.95859 1.21412 1.00794 0.92715 0.96241 1.17719 0.86520 0.90984 0.93879 1.84851 1.40947 1.44003 1.59650 1.21200 0.94894 0.98034 0.97763 1.98391 1.97038 1.57028 1.46926 1.17076 0.81925 0.98971 0.95854 1.91545 1.41431 1.95142 1.81822 1.17389 0.86450 0.94346 0.97495 1.91512 1.57179 1.71806 1.89447 0.92151 0.92092 0.93082 0.91979 0.93831 0.92607 0.90930 0.99996 0.97015 0.92811 0.88603 0.92705 0.81128 0.71803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.26 16 2 C -0.15 -5.36 4.71 30.60 0.14 -5.21 16 3 C 0.06 2.35 4.65 86.30 0.40 2.75 16 4 N -0.53 -21.67 4.58 -905.37 -4.14 -25.81 16 5 C 0.20 10.21 4.56 85.56 0.39 10.60 16 6 C -0.52 -28.38 8.65 25.60 0.22 -28.16 16 7 H 0.06 3.07 7.33 -2.91 -0.02 3.05 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -54.34 13.29 21.45 0.28 -54.06 16 10 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 C 0.08 2.59 4.89 85.56 0.42 3.01 16 15 C -0.05 -1.30 5.27 -19.83 -0.10 -1.41 16 16 C -0.09 -2.06 9.61 22.37 0.21 -1.84 16 17 C 0.16 3.14 6.70 22.50 0.15 3.29 16 18 O -0.48 -7.61 12.96 -93.24 -1.21 -8.82 16 19 C -0.09 -2.02 6.34 22.44 0.14 -1.88 16 20 Cl -0.02 -0.46 28.16 -2.72 -0.08 -0.54 16 21 C 0.08 2.12 7.28 22.41 0.16 2.28 16 22 F -0.12 -3.22 16.75 44.97 0.75 -2.47 16 23 C 0.06 1.76 6.31 22.41 0.14 1.90 16 24 F -0.12 -3.56 13.07 44.97 0.59 -2.97 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.06 2.07 5.57 -2.39 -0.01 2.05 16 29 H 0.04 1.80 6.36 -2.39 -0.02 1.78 16 30 H 0.06 2.37 7.15 -2.39 -0.02 2.35 16 31 H 0.07 2.54 4.96 -2.39 -0.01 2.53 16 32 H -0.02 -0.93 5.85 -2.39 -0.01 -0.95 16 33 H 0.01 0.62 7.69 -2.39 -0.02 0.61 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.10 2.91 7.54 -2.39 -0.02 2.89 16 36 H 0.06 1.74 5.43 -2.39 -0.01 1.72 16 37 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.42 2.21 9.06 -74.05 -0.67 1.54 16 Total: -1.00 -63.48 331.75 2.14 -61.34 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 0.46 Total: 4.48 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 3.46 Total: -17.05 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.86 Total: -79.87 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -1.21 Total: -8.82 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 1.34 Total: -5.44 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -63.48 2.14 -61.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250406370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.783 kcal (2) G-P(sol) polarization free energy of solvation -63.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds