Wall clock time and date at job start Tue Mar 31 2020 13:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28423 * 125.06335 * 2 1 4 4 C 1.31634 * 110.79889 * 180.15413 * 3 2 1 5 5 C 1.48444 * 126.21815 * 179.87486 * 4 3 2 6 6 C 1.39324 * 120.10140 * 359.69356 * 5 4 3 7 7 C 1.37997 * 119.89132 * 180.02562 * 6 5 4 8 8 C 1.38432 * 120.11008 * 0.02963 * 7 6 5 9 9 Cl 1.73599 * 119.89928 * 179.97438 * 8 7 6 10 10 C 1.38436 * 120.20739 * 0.22507 * 8 7 6 11 11 C 1.38003 * 120.10754 * 359.49476 * 10 8 7 12 12 C 1.40689 * 107.56976 * 359.61838 * 4 3 2 13 13 C 1.36661 * 125.06495 * 179.72882 * 2 1 3 14 14 C 1.47203 * 126.77220 * 0.02562 * 13 2 1 15 15 O 1.21626 * 119.99480 * 354.22624 * 14 13 2 16 16 N 1.34776 * 120.00136 * 174.22602 * 14 13 2 17 17 C 1.46492 * 120.00227 * 185.12395 * 16 14 13 18 18 C 1.50694 * 109.47644 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99609 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00444 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00125 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00249 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47344 * 89.99459 * 22 20 18 24 24 H 1.48498 * 109.47214 * 209.99813 * 22 20 18 25 25 H 1.48502 * 109.46863 * 329.99647 * 22 20 18 26 26 H 1.08998 * 109.47200 * 274.07938 * 1 2 3 27 27 H 1.08999 * 109.47396 * 34.08694 * 1 2 3 28 28 H 1.09004 * 109.46953 * 154.08360 * 1 2 3 29 29 H 1.07996 * 120.04848 * 0.04772 * 6 5 4 30 30 H 1.08008 * 119.94625 * 179.97438 * 7 6 5 31 31 H 1.08001 * 119.94529 * 179.74820 * 10 8 7 32 32 H 1.07993 * 120.05642 * 180.25772 * 11 10 8 33 33 H 1.08004 * 127.34541 * 180.22039 * 12 4 3 34 34 H 0.97002 * 119.99781 * 5.12672 * 16 14 13 35 35 H 1.09003 * 109.47115 * 300.00341 * 17 16 14 36 36 H 1.09004 * 109.47192 * 59.99895 * 17 16 14 37 37 H 0.97003 * 120.00295 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2028 1.0512 0.0000 4 6 3.4785 0.7268 -0.0033 5 6 4.6236 1.6714 -0.0070 6 6 4.3957 3.0458 -0.0136 7 6 5.4634 3.9200 -0.0175 8 6 6.7594 3.4334 -0.0155 9 17 8.0986 4.5380 -0.0212 10 6 6.9909 2.0685 -0.0143 11 6 5.9296 1.1864 -0.0045 12 6 3.5596 -0.6777 0.0033 13 6 2.2501 -1.1186 0.0053 14 6 1.7912 -2.5172 0.0114 15 8 0.6059 -2.7678 0.1180 16 7 2.6846 -3.5201 -0.1012 17 6 2.2210 -4.9056 -0.2082 18 6 3.4090 -5.8256 -0.3214 19 1 4.4095 -5.4189 -0.3148 20 6 3.2189 -7.1865 -0.4345 21 7 2.0005 -7.6818 -0.4430 22 14 4.6916 -8.3269 -0.5756 23 1 5.1216 -8.7504 0.7812 24 1 4.3170 -9.5230 -1.3720 25 1 5.8071 -7.6139 -1.2482 26 1 -0.3633 0.0731 1.0250 27 1 -0.3634 0.8511 -0.5759 28 1 -0.3633 -0.9244 -0.4492 29 1 3.3850 3.4264 -0.0153 30 1 5.2878 4.9857 -0.0231 31 1 8.0037 1.6935 -0.0169 32 1 6.1112 0.1218 0.0007 33 1 4.4546 -1.2823 0.0061 34 1 3.6346 -3.3244 -0.1114 35 1 1.6441 -5.1652 0.6795 36 1 1.5934 -5.0114 -1.0931 37 1 1.8667 -8.6392 -0.5222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344018758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:48 Heat of formation + Delta-G solvation = 50.810623 kcal Electronic energy + Delta-G solvation = -22633.030132 eV Core-core repulsion = 19016.504880 eV Total energy + Delta-G solvation = -3616.525252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.51480 -39.39015 -38.65801 -36.72938 -34.59831 -33.69610 -32.54842 -31.49864 -30.94914 -30.58168 -27.39542 -26.68907 -23.93339 -23.23037 -22.92631 -21.74884 -20.56348 -19.53887 -18.23806 -17.10327 -16.35961 -16.28265 -15.84752 -15.69407 -15.26370 -14.91819 -14.34268 -14.31341 -14.01756 -13.85966 -13.81871 -13.59830 -13.13194 -12.90791 -12.45543 -12.08018 -11.99952 -11.91678 -11.84888 -11.77866 -11.13419 -11.06309 -10.95490 -10.76852 -10.39911 -9.80096 -9.52459 -9.46990 -9.31207 -9.09144 -8.83947 -8.26390 -8.05774 -6.24870 -4.32435 0.62710 1.05925 1.43340 1.87072 2.40374 2.54030 3.20313 3.26815 3.28831 3.55779 3.66560 3.77745 4.19550 4.29331 4.48338 4.62929 4.73636 5.03941 5.05629 5.11939 5.11984 5.19388 5.28134 5.36917 5.46740 5.55886 5.65790 5.75799 5.90549 5.97332 6.25810 6.38029 6.51424 6.70185 7.12830 7.18498 7.37088 7.53504 7.85068 7.96502 8.40001 8.60311 8.84058 9.34163 10.85225 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.002696 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.351380 B =10382.040690 C =12404.956282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.253 5.253 3 N -0.270 5.270 4 C 0.050 3.950 5 C 0.012 3.988 6 C -0.088 4.088 7 C -0.110 4.110 8 C -0.037 4.037 9 Cl -0.076 7.076 10 C -0.107 4.107 11 C -0.090 4.090 12 C -0.178 4.178 13 C -0.016 4.016 14 C 0.571 3.429 15 O -0.553 6.553 16 N -0.689 5.689 17 C 0.250 3.750 18 C -0.546 4.546 19 H 0.065 0.935 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.395 0.605 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 21.864 0.655 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.040 5.040 3 N -0.104 5.104 4 C -0.104 4.104 5 C 0.010 3.990 6 C -0.107 4.107 7 C -0.129 4.129 8 C -0.064 4.064 9 Cl -0.047 7.047 10 C -0.126 4.126 11 C -0.110 4.110 12 C -0.207 4.207 13 C -0.144 4.144 14 C 0.354 3.646 15 O -0.433 6.433 16 N -0.337 5.337 17 C 0.130 3.870 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.182 0.818 34 H 0.229 0.771 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.041 22.422 0.689 22.992 hybrid contribution 1.738 -1.166 -0.051 2.094 sum 6.779 21.256 0.638 22.319 Atomic orbital electron populations 1.22422 0.72135 1.06264 1.04736 1.45543 1.07973 1.01639 1.48865 1.73243 1.03169 1.13586 1.20397 1.20138 0.90079 0.92029 1.08138 1.17833 0.90282 0.91506 0.99382 1.21179 0.99360 0.91830 0.98330 1.20973 0.90337 1.00605 1.00950 1.21003 0.88737 0.90894 1.05813 1.98369 1.46266 1.63117 1.96959 1.20960 1.00112 0.90809 1.00672 1.21115 0.90564 1.00459 0.98858 1.22179 0.96141 0.94027 1.08334 1.21792 0.90898 0.90512 1.11182 1.16969 0.86405 0.82676 0.78555 1.90741 1.16298 1.84453 1.51816 1.46267 1.08967 1.08396 1.70056 1.19236 0.96062 0.73682 0.97982 1.21180 0.92450 0.91634 1.53142 0.91693 1.24940 0.96328 0.98076 0.94557 1.69965 1.20350 1.13450 1.48419 0.86388 0.82069 0.80072 0.78259 1.20388 1.20971 1.19633 0.89653 0.89138 0.86496 0.84433 0.84814 0.84536 0.84301 0.81848 0.77142 0.94973 0.95118 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.86 59.85 0.65 1.65 16 2 N -0.25 -3.76 3.75 -63.91 -0.24 -4.00 16 3 N -0.27 -3.89 11.58 33.40 0.39 -3.50 16 4 C 0.05 0.68 6.99 -82.82 -0.58 0.10 16 5 C 0.01 0.14 5.88 -104.89 -0.62 -0.48 16 6 C -0.09 -0.90 9.69 -39.27 -0.38 -1.28 16 7 C -0.11 -1.00 9.81 -39.60 -0.39 -1.39 16 8 C -0.04 -0.35 6.32 -39.44 -0.25 -0.60 16 9 Cl -0.08 -0.66 28.95 -51.86 -1.50 -2.16 16 10 C -0.11 -0.96 9.81 -39.59 -0.39 -1.34 16 11 C -0.09 -0.88 9.58 -39.27 -0.38 -1.25 16 12 C -0.18 -2.47 9.84 -38.68 -0.38 -2.85 16 13 C -0.02 -0.25 6.94 -82.10 -0.57 -0.82 16 14 C 0.57 11.08 7.78 -12.62 -0.10 10.98 16 15 O -0.55 -12.18 14.66 5.25 0.08 -12.11 16 16 N -0.69 -13.84 5.54 -62.64 -0.35 -14.19 16 17 C 0.25 6.29 5.43 -5.20 -0.03 6.26 16 18 C -0.55 -14.14 9.28 -34.45 -0.32 -14.46 16 19 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 20 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.88 -25.15 13.29 55.43 0.74 -24.41 16 22 Si 0.91 20.16 29.54 -169.99 -5.02 15.14 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.12 1.56 6.20 -51.93 -0.32 1.24 16 29 H 0.14 1.34 7.86 -52.49 -0.41 0.93 16 30 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.14 1.13 7.10 -52.49 -0.37 0.75 16 33 H 0.16 1.81 6.95 -52.48 -0.36 1.45 16 34 H 0.39 6.77 7.34 -40.82 -0.30 6.47 16 35 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -30.95 342.35 -8.41 -39.36 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.84 Total: 4.54 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -3.82 Total: -3.83 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.54 Total: -46.11 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.95 -8.41 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344018758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.175 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds