Wall clock time and date at job start Tue Mar 31 2020 13:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28423 * 125.06335 * 2 1 4 4 C 1.31634 * 110.79889 * 180.15413 * 3 2 1 5 5 C 1.48444 * 126.21815 * 179.87486 * 4 3 2 6 6 C 1.39324 * 120.10140 * 359.69356 * 5 4 3 7 7 C 1.37997 * 119.89132 * 180.02562 * 6 5 4 8 8 C 1.38432 * 120.11008 * 0.02963 * 7 6 5 9 9 Cl 1.73599 * 119.89928 * 179.97438 * 8 7 6 10 10 C 1.38436 * 120.20739 * 0.22507 * 8 7 6 11 11 C 1.38003 * 120.10754 * 359.49476 * 10 8 7 12 12 C 1.40689 * 107.56976 * 359.61838 * 4 3 2 13 13 C 1.36661 * 125.06495 * 179.72882 * 2 1 3 14 14 C 1.47203 * 126.77220 * 0.02562 * 13 2 1 15 15 O 1.21626 * 119.99480 * 354.22624 * 14 13 2 16 16 N 1.34776 * 120.00136 * 174.22602 * 14 13 2 17 17 C 1.46492 * 120.00227 * 185.12395 * 16 14 13 18 18 C 1.50694 * 109.47644 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99609 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00444 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00125 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00249 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47344 * 89.99459 * 22 20 18 24 24 H 1.48498 * 109.47214 * 209.99813 * 22 20 18 25 25 H 1.48502 * 109.46863 * 329.99647 * 22 20 18 26 26 H 1.08998 * 109.47200 * 274.07938 * 1 2 3 27 27 H 1.08999 * 109.47396 * 34.08694 * 1 2 3 28 28 H 1.09004 * 109.46953 * 154.08360 * 1 2 3 29 29 H 1.07996 * 120.04848 * 0.04772 * 6 5 4 30 30 H 1.08008 * 119.94625 * 179.97438 * 7 6 5 31 31 H 1.08001 * 119.94529 * 179.74820 * 10 8 7 32 32 H 1.07993 * 120.05642 * 180.25772 * 11 10 8 33 33 H 1.08004 * 127.34541 * 180.22039 * 12 4 3 34 34 H 0.97002 * 119.99781 * 5.12672 * 16 14 13 35 35 H 1.09003 * 109.47115 * 300.00341 * 17 16 14 36 36 H 1.09004 * 109.47192 * 59.99895 * 17 16 14 37 37 H 0.97003 * 120.00295 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2028 1.0512 0.0000 4 6 3.4785 0.7268 -0.0033 5 6 4.6236 1.6714 -0.0070 6 6 4.3957 3.0458 -0.0136 7 6 5.4634 3.9200 -0.0175 8 6 6.7594 3.4334 -0.0155 9 17 8.0986 4.5380 -0.0212 10 6 6.9909 2.0685 -0.0143 11 6 5.9296 1.1864 -0.0045 12 6 3.5596 -0.6777 0.0033 13 6 2.2501 -1.1186 0.0053 14 6 1.7912 -2.5172 0.0114 15 8 0.6059 -2.7678 0.1180 16 7 2.6846 -3.5201 -0.1012 17 6 2.2210 -4.9056 -0.2082 18 6 3.4090 -5.8256 -0.3214 19 1 4.4095 -5.4189 -0.3148 20 6 3.2189 -7.1865 -0.4345 21 7 2.0005 -7.6818 -0.4430 22 14 4.6916 -8.3269 -0.5756 23 1 5.1216 -8.7504 0.7812 24 1 4.3170 -9.5230 -1.3720 25 1 5.8071 -7.6139 -1.2482 26 1 -0.3633 0.0731 1.0250 27 1 -0.3634 0.8511 -0.5759 28 1 -0.3633 -0.9244 -0.4492 29 1 3.3850 3.4264 -0.0153 30 1 5.2878 4.9857 -0.0231 31 1 8.0037 1.6935 -0.0169 32 1 6.1112 0.1218 0.0007 33 1 4.4546 -1.2823 0.0061 34 1 3.6346 -3.3244 -0.1114 35 1 1.6441 -5.1652 0.6795 36 1 1.5934 -5.0114 -1.0931 37 1 1.8667 -8.6392 -0.5222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344018758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:48 Heat of formation + Delta-G solvation = 32.017673 kcal Electronic energy + Delta-G solvation = -22633.845056 eV Core-core repulsion = 19016.504880 eV Total energy + Delta-G solvation = -3617.340176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.63769 -40.39640 -40.01253 -37.43262 -36.33224 -34.86928 -34.35022 -32.46196 -31.93209 -31.51212 -29.25573 -27.68613 -25.47886 -24.32774 -23.86501 -23.05020 -21.78052 -20.87835 -19.52757 -18.22449 -17.76809 -17.43876 -17.20092 -16.93836 -16.56628 -16.13947 -15.95069 -15.61447 -14.97564 -14.92556 -14.62377 -14.56169 -14.38111 -14.05678 -13.97363 -13.80545 -13.40492 -12.93005 -12.75492 -12.70723 -12.58216 -12.55155 -12.22039 -11.98119 -11.66815 -11.48841 -11.11913 -10.81403 -10.72420 -10.29946 -10.01281 -9.88284 -9.13435 -8.28312 -6.44263 -0.17544 0.16694 0.35637 1.16938 1.29961 1.46952 1.48068 1.56805 1.59365 2.13147 2.27133 2.47056 2.82385 3.07674 3.20888 3.48292 3.80803 3.93180 3.97130 4.18293 4.27117 4.30130 4.34859 4.47216 4.59236 4.67254 4.70397 5.03332 5.07085 5.09282 5.22710 5.26534 5.37317 5.40976 5.44017 5.62438 5.66634 5.78111 5.82677 6.62004 6.69566 6.90189 7.16390 7.32029 8.83616 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.002696 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.351380 B =10382.040690 C =12404.956282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.258 5.258 3 N -0.272 5.272 4 C 0.050 3.950 5 C -0.010 4.010 6 C -0.091 4.091 7 C -0.110 4.110 8 C -0.041 4.041 9 Cl -0.070 7.070 10 C -0.107 4.107 11 C -0.089 4.089 12 C -0.163 4.163 13 C -0.044 4.044 14 C 0.574 3.426 15 O -0.586 6.586 16 N -0.685 5.685 17 C 0.268 3.732 18 C -0.555 4.555 19 H 0.087 0.913 20 C 0.007 3.993 21 N -0.929 5.929 22 Si 0.982 3.018 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.254 1.254 26 H 0.096 0.904 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.191 0.809 34 H 0.411 0.589 35 H -0.004 1.004 36 H -0.003 1.003 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.711 23.198 0.598 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.046 5.046 3 N -0.106 5.106 4 C -0.104 4.104 5 C -0.012 4.012 6 C -0.111 4.111 7 C -0.129 4.129 8 C -0.068 4.068 9 Cl -0.041 7.041 10 C -0.126 4.126 11 C -0.108 4.108 12 C -0.191 4.191 13 C -0.171 4.171 14 C 0.360 3.640 15 O -0.468 6.468 16 N -0.334 5.334 17 C 0.146 3.854 18 C -0.593 4.593 19 H 0.105 0.895 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.805 3.195 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.178 1.178 26 H 0.114 0.886 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.156 0.844 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.208 0.792 34 H 0.248 0.752 35 H 0.014 0.986 36 H 0.014 0.986 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.954 23.803 0.635 25.105 hybrid contribution 0.847 -1.413 -0.024 1.648 sum 8.801 22.390 0.611 24.065 Atomic orbital electron populations 1.22550 0.71076 1.06450 1.05804 1.45795 1.08765 1.01243 1.48786 1.73254 1.03761 1.13241 1.20362 1.20506 0.90343 0.92335 1.07179 1.17915 0.90209 0.91608 1.01470 1.21240 0.99833 0.91680 0.98336 1.21143 0.89995 1.01394 1.00342 1.21189 0.89030 0.91343 1.05267 1.98375 1.45923 1.62951 1.96884 1.21198 1.00890 0.90589 0.99907 1.21314 0.89942 1.01511 0.98054 1.22540 0.95969 0.94499 1.06138 1.21336 0.92223 0.89049 1.14503 1.17316 0.85707 0.83908 0.77077 1.90720 1.17807 1.85312 1.52974 1.45907 1.09991 1.06769 1.70767 1.18677 0.95488 0.76485 0.94740 1.21588 0.93296 0.91983 1.52447 0.89548 1.26000 0.99343 1.00043 0.93943 1.70121 1.23035 1.13916 1.49714 0.85192 0.78393 0.77462 0.78426 1.19727 1.21178 1.17758 0.88557 0.86356 0.88448 0.84394 0.83118 0.82620 0.82696 0.79182 0.75216 0.98621 0.98553 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.91 10.86 127.77 1.39 3.30 16 2 N -0.26 -7.55 3.75 -356.13 -1.33 -8.89 16 3 N -0.27 -7.52 11.58 -48.23 -0.56 -8.07 16 4 C 0.05 1.28 6.99 42.49 0.30 1.57 16 5 C -0.01 -0.21 5.88 -20.04 -0.12 -0.33 16 6 C -0.09 -1.71 9.69 22.47 0.22 -1.49 16 7 C -0.11 -1.75 9.81 22.26 0.22 -1.53 16 8 C -0.04 -0.66 6.32 22.36 0.14 -0.52 16 9 Cl -0.07 -1.05 28.95 -2.72 -0.08 -1.13 16 10 C -0.11 -1.61 9.81 22.26 0.22 -1.39 16 11 C -0.09 -1.48 9.58 22.47 0.22 -1.26 16 12 C -0.16 -4.23 9.84 22.85 0.22 -4.00 16 13 C -0.04 -1.40 6.94 40.73 0.28 -1.11 16 14 C 0.57 22.83 7.78 86.60 0.67 23.51 16 15 O -0.59 -27.07 14.66 -4.11 -0.06 -27.13 16 16 N -0.69 -27.87 5.54 -470.35 -2.60 -30.48 16 17 C 0.27 13.98 5.43 85.63 0.47 14.44 16 18 C -0.56 -28.79 9.28 25.60 0.24 -28.55 16 19 H 0.09 4.01 7.60 -2.91 -0.02 3.98 16 20 C 0.01 0.35 5.46 84.65 0.46 0.81 16 21 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 22 Si 0.98 40.79 29.54 68.60 2.03 42.82 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.29 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 2.73 6.20 -2.38 -0.01 2.71 16 29 H 0.14 2.49 7.86 -2.91 -0.02 2.47 16 30 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.16 1.99 7.10 -2.91 -0.02 1.97 16 33 H 0.19 3.66 6.95 -2.91 -0.02 3.64 16 34 H 0.41 13.71 7.34 -92.71 -0.68 13.03 16 35 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 37 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -68.11 342.35 3.04 -65.07 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.44 Total: 18.24 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 4.92 Total: 3.45 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -4.21 Total: -101.31 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -68.11 3.04 -65.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344018758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.085 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds