Wall clock time and date at job start Tue Mar 31 2020 13:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35044 * 126.03954 * 2 1 4 4 C 1.35370 * 107.72784 * 179.97438 * 3 2 1 5 5 Cl 1.73609 * 126.04241 * 179.97438 * 4 3 2 6 6 C 1.39926 * 107.91068 * 0.02562 * 4 3 2 7 7 C 1.50705 * 125.89181 * 179.97438 * 6 4 3 8 8 N 1.46506 * 109.46866 * 90.00284 * 7 6 4 9 9 C 1.34776 * 119.99898 * 179.97438 * 8 7 6 10 10 O 1.21589 * 119.99667 * 359.97438 * 9 8 7 11 11 C 1.47639 * 120.00171 * 179.97438 * 9 8 7 12 12 C 1.40015 * 119.89172 * 359.72785 * 11 9 8 13 13 C 1.36322 * 120.10536 * 179.75930 * 12 11 9 14 14 C 1.40885 * 119.88743 * 0.51482 * 13 12 11 15 15 C 1.41111 * 120.10324 * 179.71798 * 14 13 12 16 16 H 1.07994 * 120.00300 * 204.64758 * 15 14 13 17 17 C 1.40227 * 119.99786 * 24.64913 * 15 14 13 18 18 N 1.30653 * 119.99890 * 17.86408 * 17 15 14 19 19 Si 1.86800 * 120.00099 * 197.86758 * 17 15 14 20 20 H 1.48496 * 109.47471 * 89.99838 * 19 17 15 21 21 H 1.48504 * 109.47259 * 210.00167 * 19 17 15 22 22 H 1.48499 * 109.46793 * 329.99646 * 19 17 15 23 23 C 1.40893 * 119.79674 * 359.73746 * 14 13 12 24 24 C 1.36316 * 119.89040 * 0.02562 * 23 14 13 25 25 N 1.30843 * 108.21004 * 359.75434 * 6 4 3 26 26 H 1.08999 * 109.46871 * 89.99867 * 1 2 3 27 27 H 1.09005 * 109.47467 * 209.99755 * 1 2 3 28 28 H 1.08999 * 109.47332 * 329.99791 * 1 2 3 29 29 H 1.08002 * 126.13105 * 359.94896 * 3 2 1 30 30 H 1.08996 * 109.46731 * 209.99866 * 7 6 4 31 31 H 1.08996 * 109.47467 * 330.00177 * 7 6 4 32 32 H 0.97000 * 119.99645 * 359.97438 * 8 7 6 33 33 H 1.08002 * 119.94685 * 0.02562 * 12 11 9 34 34 H 1.07996 * 120.05328 * 180.22945 * 13 12 11 35 35 H 0.97004 * 119.99544 * 179.97438 * 18 17 15 36 36 H 1.07995 * 120.05244 * 179.97438 * 23 14 13 37 37 H 1.08004 * 119.94457 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2595 1.0920 0.0000 4 6 3.5446 0.6667 0.0006 5 17 4.9554 1.6784 0.0002 6 6 3.5348 -0.7326 0.0003 7 6 4.7495 -1.6246 0.0003 8 7 5.1430 -1.9139 1.3815 9 6 6.2106 -2.6987 1.6278 10 8 6.8470 -3.1669 0.7035 11 6 6.6075 -2.9898 3.0197 12 6 5.8765 -2.4448 4.0823 13 6 6.2362 -2.7147 5.3692 14 6 7.3519 -3.5347 5.6290 15 6 7.7318 -3.8123 6.9594 16 1 8.7537 -4.0792 7.1847 17 6 6.7824 -3.7414 7.9889 18 7 5.5074 -3.7675 7.7047 19 14 7.3405 -3.6097 9.7667 20 1 7.4824 -2.1785 10.1363 21 1 6.3343 -4.2516 10.6503 22 1 8.6484 -4.2944 9.9269 23 6 8.0875 -4.0766 4.5565 24 6 7.7173 -3.8050 3.2730 25 7 2.2891 -1.1327 0.0050 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9288 2.1201 -0.0008 30 1 4.5155 -2.5568 -0.5137 31 1 5.5692 -1.1223 -0.5134 32 1 4.6350 -1.5406 2.1188 33 1 5.0238 -1.8130 3.8820 34 1 5.6695 -2.2969 6.1881 35 1 4.8507 -3.7189 8.4169 36 1 8.9438 -4.7054 4.7509 37 1 8.2808 -4.2195 2.4501 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361392735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:06 Heat of formation + Delta-G solvation = 32.471825 kcal Electronic energy + Delta-G solvation = -22800.856684 eV Core-core repulsion = 19183.536201 eV Total energy + Delta-G solvation = -3617.320482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.45914 -40.72038 -38.91331 -37.43450 -36.20921 -35.66389 -34.04709 -32.11727 -31.29946 -31.17616 -29.45434 -27.59376 -26.03253 -23.61930 -22.78552 -22.38651 -21.41873 -21.18384 -19.36057 -18.75086 -17.92712 -17.38589 -16.97080 -16.42949 -16.23104 -15.76721 -15.64666 -15.43275 -15.11816 -15.04371 -14.45787 -14.20740 -13.94724 -13.85846 -13.63596 -13.55229 -13.35728 -13.17068 -12.85920 -12.62487 -12.60934 -12.44135 -12.36731 -11.76084 -11.54022 -11.36681 -11.12574 -10.90808 -10.47591 -10.14191 -9.56926 -9.49345 -9.40477 -8.78811 -6.47726 0.44316 0.57607 0.98022 1.16037 1.18868 1.39418 1.44128 1.54033 1.73319 2.12574 2.18191 2.54839 2.78928 3.32145 3.54918 3.70129 3.97713 4.18762 4.25050 4.30430 4.42152 4.45258 4.46422 4.58092 4.70396 4.75150 4.93118 5.03619 5.06151 5.16306 5.30266 5.43294 5.59547 5.82233 5.83808 5.94556 6.00266 6.23041 6.37534 6.54436 6.63722 6.77712 6.89385 7.39352 8.16439 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002905 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.888706 B = 9635.134026 C =10347.706085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.359 5.359 3 C 0.092 3.908 4 C -0.197 4.197 5 Cl -0.040 7.040 6 C 0.062 3.938 7 C 0.208 3.792 8 N -0.717 5.717 9 C 0.577 3.423 10 O -0.600 6.600 11 C -0.292 4.292 12 C -0.053 4.053 13 C -0.197 4.197 14 C 0.102 3.898 15 C -0.473 4.473 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.799 5.799 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.257 1.257 23 C -0.252 4.252 24 C -0.030 4.030 25 N -0.296 5.296 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.126 0.874 29 H 0.229 0.771 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.405 0.595 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.297 0.703 36 H 0.106 0.894 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.096 12.899 -9.015 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.141 5.141 3 C -0.057 4.057 4 C -0.236 4.236 5 Cl -0.012 7.012 6 C -0.104 4.104 7 C 0.082 3.918 8 N -0.370 5.370 9 C 0.371 3.629 10 O -0.484 6.484 11 C -0.296 4.296 12 C -0.072 4.072 13 C -0.216 4.216 14 C 0.099 3.901 15 C -0.500 4.500 16 H 0.104 0.896 17 C -0.182 4.182 18 N -0.422 5.422 19 Si 0.809 3.191 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.181 1.181 23 C -0.272 4.272 24 C -0.049 4.049 25 N -0.121 5.121 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.145 0.855 29 H 0.245 0.755 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.241 0.759 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.793 11.649 -9.597 20.446 hybrid contribution 0.644 0.668 0.894 1.289 sum -13.149 12.317 -8.703 20.009 Atomic orbital electron populations 1.22423 0.70222 1.06683 1.05500 1.48777 1.08346 1.02678 1.54308 1.22869 0.88352 0.95559 0.98887 1.20855 0.89950 0.90543 1.22247 1.98344 1.38150 1.66868 1.97805 1.22003 0.93284 0.92862 1.02223 1.19345 0.91173 0.97090 0.84150 1.45644 1.31174 1.52074 1.08103 1.18350 0.78977 0.76723 0.88886 1.90619 1.55719 1.54994 1.47112 1.19119 1.04853 1.14498 0.91130 1.20673 0.97075 0.97068 0.92408 1.20988 1.01703 1.03350 0.95594 1.18133 0.90820 0.87621 0.93498 1.20128 0.97634 1.40192 0.92023 0.89562 1.26949 0.94051 0.90719 1.06446 1.69778 1.02977 1.31415 1.38033 0.85091 0.79523 0.79859 0.74673 1.18321 1.18938 1.18070 1.20869 1.05515 1.08389 0.92410 1.20509 0.94205 0.94225 0.95986 1.77461 1.00697 1.09654 1.24247 0.88480 0.89071 0.85549 0.75461 0.90919 0.89645 0.75919 0.86651 0.86908 0.89215 0.87587 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.47 127.77 1.47 2.08 16 2 N -0.36 -6.12 4.02 -369.45 -1.48 -7.60 16 3 C 0.09 1.40 11.47 83.54 0.96 2.36 16 4 C -0.20 -4.41 6.64 22.02 0.15 -4.27 16 5 Cl -0.04 -0.91 29.01 -2.72 -0.08 -0.99 16 6 C 0.06 1.68 6.59 43.12 0.28 1.96 16 7 C 0.21 6.53 6.10 85.63 0.52 7.05 16 8 N -0.72 -25.64 5.50 -469.88 -2.58 -28.23 16 9 C 0.58 25.41 7.76 86.73 0.67 26.08 16 10 O -0.60 -29.37 16.32 -3.99 -0.07 -29.44 16 11 C -0.29 -13.78 5.89 -19.93 -0.12 -13.89 16 12 C -0.05 -2.43 9.47 22.25 0.21 -2.22 16 13 C -0.20 -9.97 8.63 22.47 0.19 -9.78 16 14 C 0.10 5.41 5.58 -21.28 -0.12 5.29 16 15 C -0.47 -24.09 9.04 23.46 0.21 -23.88 16 16 H 0.09 4.21 7.91 -2.91 -0.02 4.19 16 17 C 0.04 1.75 5.14 85.35 0.44 2.19 16 18 N -0.80 -38.61 10.95 21.87 0.24 -38.37 16 19 Si 0.99 35.03 29.60 68.60 2.03 37.06 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 21 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 22 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 23 C -0.25 -12.72 9.73 22.47 0.22 -12.50 16 24 C -0.03 -1.47 9.52 22.25 0.21 -1.26 16 25 N -0.30 -7.73 12.57 -47.34 -0.60 -8.33 16 26 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.23 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 2.69 8.00 -2.39 -0.02 2.67 16 32 H 0.40 13.49 6.46 -92.71 -0.60 12.89 16 33 H 0.12 4.49 6.37 -2.91 -0.02 4.47 16 34 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 35 H 0.30 12.73 8.29 -92.71 -0.77 11.96 16 36 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 37 H 0.11 4.99 7.63 -2.91 -0.02 4.97 16 Total: -1.00 -68.01 341.85 3.29 -64.72 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.53 Total: 31.97 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: 5.30 Total: -20.80 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -4.42 Total: -82.52 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.07 Total: -29.44 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -68.01 3.29 -64.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361392735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.191 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds