Wall clock time and date at job start Tue Mar 31 2020 13:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47347 * 2 1 4 4 N 1.28436 * 125.19173 * 277.65065 * 3 2 1 5 5 C 1.30839 * 110.98712 * 180.27477 * 4 3 2 6 6 C 1.39786 * 107.88640 * 359.75659 * 5 4 3 7 7 Cl 1.73605 * 127.34063 * 179.97438 * 6 5 4 8 8 C 1.36766 * 125.18564 * 97.50857 * 3 2 1 9 9 C 1.46973 * 126.90726 * 0.02562 * 8 3 2 10 10 O 1.21661 * 119.99175 * 259.84927 * 9 8 3 11 11 N 1.34772 * 120.00509 * 79.85435 * 9 8 3 12 12 C 1.39097 * 120.00451 * 186.98880 * 11 9 8 13 13 C 1.39515 * 119.83802 * 145.82441 * 12 11 9 14 14 C 1.36358 * 120.16283 * 180.27795 * 13 12 11 15 15 C 1.40883 * 119.83221 * 359.52373 * 14 13 12 16 16 C 1.41128 * 120.15778 * 180.20738 * 15 14 13 17 17 H 1.08009 * 119.99620 * 210.70968 * 16 15 14 18 18 C 1.39907 * 120.00267 * 30.71409 * 16 15 14 19 19 N 1.30870 * 120.00132 * 11.66155 * 18 16 15 20 20 Si 1.86805 * 120.00050 * 191.65786 * 18 16 15 21 21 H 1.48502 * 109.47017 * 94.86595 * 20 18 16 22 22 H 1.48504 * 109.47122 * 214.86777 * 20 18 16 23 23 H 1.48500 * 109.47048 * 334.86602 * 20 18 16 24 24 C 1.40874 * 119.67746 * 0.47703 * 15 14 13 25 25 C 1.36361 * 119.83497 * 359.75376 * 24 15 14 26 26 H 1.08997 * 109.47068 * 59.99514 * 1 2 3 27 27 H 1.08997 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46602 * 299.99634 * 1 2 3 29 29 H 1.09007 * 109.46951 * 240.00476 * 2 1 3 30 30 H 1.08996 * 109.47567 * 120.00653 * 2 1 3 31 31 H 1.08000 * 126.05169 * 179.78937 * 5 4 3 32 32 H 0.97000 * 119.99364 * 6.98696 * 11 9 8 33 33 H 1.07997 * 119.92178 * 0.02562 * 13 12 11 34 34 H 1.08000 * 120.08278 * 179.75140 * 14 13 12 35 35 H 0.96998 * 120.00459 * 179.97438 * 19 18 16 36 36 H 1.08007 * 120.08591 * 179.72702 * 24 15 14 37 37 H 1.07999 * 119.91923 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1334 2.1257 -1.0403 5 6 2.6020 3.3053 -0.7229 6 6 2.8057 3.3285 0.6599 7 17 3.4142 4.6460 1.6127 8 6 2.4188 2.0755 1.1082 9 6 2.4409 1.5884 2.4947 10 8 1.5464 1.8934 3.2608 11 7 3.4521 0.8040 2.9173 12 6 3.4014 0.2244 4.1808 13 6 3.9522 -1.0408 4.3867 14 6 3.9012 -1.6176 5.6212 15 6 3.2993 -0.9285 6.6925 16 6 3.2466 -1.5172 7.9740 17 1 2.4259 -1.2912 8.6387 18 6 4.2575 -2.3934 8.3835 19 7 5.3595 -2.4935 7.6846 20 14 4.0345 -3.4204 9.9279 21 1 3.5078 -4.7593 9.5602 22 1 5.3429 -3.5742 10.6133 23 1 3.0755 -2.7440 10.8379 24 6 2.7452 0.3487 6.4768 25 6 2.7995 0.9109 5.2357 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.7964 4.1173 -1.4078 32 1 4.2152 0.6436 2.3404 33 1 4.4165 -1.5664 3.5654 34 1 4.3244 -2.5988 5.7782 35 1 6.0605 -3.1007 7.9686 36 1 2.2783 0.8810 7.2924 37 1 2.3748 1.8898 5.0688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361434404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:05 Heat of formation + Delta-G solvation = 59.846786 kcal Electronic energy + Delta-G solvation = -23499.829637 eV Core-core repulsion = 19883.696222 eV Total energy + Delta-G solvation = -3616.133415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.74659 -39.63055 -37.30396 -36.64807 -34.75424 -34.58362 -33.09231 -31.03069 -29.97905 -29.66557 -28.88536 -25.42457 -24.34402 -23.10661 -21.85057 -21.40490 -20.63083 -19.67453 -18.16234 -17.38440 -16.76159 -16.19794 -15.89778 -15.39984 -15.23912 -14.71220 -14.38700 -14.18299 -13.99249 -13.55425 -13.10143 -13.03251 -12.74224 -12.39466 -12.23807 -11.95490 -11.89334 -11.74699 -11.59879 -11.56000 -11.21338 -11.02535 -10.65436 -10.58574 -10.29442 -9.91210 -9.59433 -9.43401 -9.26459 -8.90385 -8.84667 -7.64847 -7.06667 -6.80152 -4.39883 1.36639 1.67492 2.22848 2.33291 2.56616 2.91440 3.00550 3.04688 3.08441 3.22444 3.43285 3.89473 4.25380 4.54355 4.62158 4.71043 4.75583 4.90603 5.07490 5.23605 5.34321 5.49872 5.59377 5.82657 6.01244 6.07929 6.34687 6.44031 6.59115 6.79465 6.95780 7.07903 7.18113 7.51129 7.56871 7.72264 7.75271 7.95500 8.09211 8.20024 8.43087 8.55123 8.81209 8.88669 10.15037 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.021709 B = 0.003076 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.451477 B = 9100.368180 C = 9764.299743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 N -0.262 5.262 4 N -0.274 5.274 5 C 0.021 3.979 6 C -0.119 4.119 7 Cl -0.020 7.020 8 C 0.000 4.000 9 C 0.572 3.428 10 O -0.503 6.503 11 N -0.630 5.630 12 C -0.014 4.014 13 C -0.110 4.110 14 C -0.146 4.146 15 C 0.111 3.889 16 C -0.459 4.459 17 H 0.079 0.921 18 C 0.074 3.926 19 N -0.799 5.799 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.212 4.212 25 C -0.077 4.077 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.193 0.807 32 H 0.398 0.602 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.280 0.720 36 H 0.097 0.903 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 4.179 -14.847 15.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.005 4.005 3 N -0.051 5.051 4 N -0.104 5.104 5 C -0.157 4.157 6 C -0.157 4.157 7 Cl 0.008 6.992 8 C -0.131 4.131 9 C 0.354 3.646 10 O -0.376 6.376 11 N -0.273 5.273 12 C -0.106 4.106 13 C -0.131 4.131 14 C -0.166 4.166 15 C 0.108 3.892 16 C -0.489 4.489 17 H 0.097 0.903 18 C -0.143 4.143 19 N -0.425 5.425 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.232 4.232 25 C -0.097 4.097 26 H 0.087 0.913 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.210 0.790 32 H 0.232 0.768 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.289 3.559 -15.115 15.873 hybrid contribution 0.829 0.121 1.085 1.371 sum -2.460 3.679 -14.030 14.711 Atomic orbital electron populations 1.22167 0.92929 1.03934 1.03821 1.22155 0.96723 0.75938 1.05702 1.45779 1.44907 1.12241 1.02181 1.73190 1.19803 1.03748 1.13689 1.23474 1.03508 0.95894 0.92869 1.21261 1.10993 0.90661 0.92821 1.98360 1.85789 1.44056 1.70967 1.21492 1.07854 0.93507 0.90209 1.16814 0.82997 0.80523 0.84265 1.90847 1.37514 1.55220 1.54060 1.42865 1.20263 1.47177 1.16983 1.17166 1.14615 0.95623 0.83187 1.20204 1.02237 0.93026 0.97583 1.20873 1.04477 1.00473 0.90778 1.17703 0.88650 0.89849 0.93012 1.19584 1.07193 1.22265 0.99873 0.90292 1.25905 0.94179 0.95636 0.98609 1.69801 1.04447 1.30615 1.37672 0.86245 0.78698 0.80274 0.81192 1.19388 1.20254 1.18556 1.20766 1.10020 0.96612 0.95836 1.20518 0.98650 0.98818 0.91725 0.91260 0.89678 0.91212 0.87517 0.87714 0.78981 0.76780 0.89087 0.86197 0.90873 0.88475 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 10.24 37.16 0.38 -1.21 16 2 C 0.11 1.13 6.93 -4.04 -0.03 1.10 16 3 N -0.26 -3.33 3.35 -57.11 -0.19 -3.52 16 4 N -0.27 -3.42 11.89 30.61 0.36 -3.06 16 5 C 0.02 0.24 12.03 -17.40 -0.21 0.03 16 6 C -0.12 -1.64 6.89 -38.87 -0.27 -1.91 16 7 Cl -0.02 -0.27 29.24 -51.86 -1.52 -1.79 16 8 C 0.00 0.00 6.72 -82.00 -0.55 -0.55 16 9 C 0.57 10.03 6.73 -12.72 -0.09 9.95 16 10 O -0.50 -10.66 14.38 5.22 0.08 -10.59 16 11 N -0.63 -10.84 5.29 -10.84 -0.06 -10.90 16 12 C -0.01 -0.30 6.34 -83.61 -0.53 -0.83 16 13 C -0.11 -2.38 9.90 -39.78 -0.39 -2.77 16 14 C -0.15 -3.58 8.59 -39.26 -0.34 -3.92 16 15 C 0.11 2.86 5.52 -106.80 -0.59 2.27 16 16 C -0.46 -11.87 9.03 -37.86 -0.34 -12.21 16 17 H 0.08 1.98 7.87 -52.48 -0.41 1.56 16 18 C 0.07 1.80 5.22 -17.34 -0.09 1.71 16 19 N -0.80 -19.96 11.02 55.55 0.61 -19.35 16 20 Si 0.91 18.23 29.58 -169.99 -5.03 13.20 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 C -0.21 -5.23 9.74 -39.26 -0.38 -5.62 16 25 C -0.08 -1.80 8.64 -39.78 -0.34 -2.15 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.08 7.59 -51.93 -0.39 0.68 16 31 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.40 5.67 8.80 -40.82 -0.36 5.31 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.12 3.02 6.40 -52.49 -0.34 2.68 16 35 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 36 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 37 H 0.11 2.61 6.04 -52.49 -0.32 2.29 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -29.42 340.33 -8.30 -37.72 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -3.91 Total: 9.25 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -3.77 Total: -16.09 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.73 Total: -36.83 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.52 Total: -1.79 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.42 -8.30 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361434404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.565 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds