Wall clock time and date at job start Tue Mar 31 2020 12:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29415 * 125.70148 * 2 1 4 4 N 1.26391 * 116.48175 * 179.75110 * 3 2 1 5 5 C 1.29416 * 116.47423 * 0.53163 * 4 3 2 6 6 C 1.50695 * 125.69803 * 179.76797 * 5 4 3 7 7 N 1.46499 * 109.47310 * 89.69813 * 6 5 4 8 8 C 1.34771 * 120.00268 * 180.28019 * 7 6 5 9 9 O 1.21583 * 120.00098 * 359.71466 * 8 7 6 10 10 N 1.34780 * 120.00238 * 179.72225 * 8 7 6 11 11 C 1.39453 * 120.00239 * 174.97278 * 10 8 7 12 12 C 1.38649 * 119.64883 * 185.35819 * 11 10 8 13 13 C 1.40818 * 118.67256 * 179.97438 * 12 11 10 14 14 C 1.41545 * 120.99701 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00352 * 151.72805 * 14 13 12 16 16 C 1.40032 * 120.00183 * 331.73502 * 14 13 12 17 17 N 1.30749 * 119.99490 * 350.14838 * 16 14 13 18 18 Si 1.86793 * 120.00334 * 170.15120 * 16 14 13 19 19 H 1.48498 * 109.47126 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47485 * 119.99883 * 18 16 14 21 21 H 1.48508 * 109.47125 * 239.99494 * 18 16 14 22 22 C 1.41166 * 118.00911 * 0.02562 * 13 12 11 23 23 C 1.36587 * 119.12337 * 359.97438 * 22 13 12 24 24 N 1.32069 * 121.26397 * 359.72977 * 23 22 13 25 25 S 1.71217 * 108.60514 * 359.50877 * 5 4 3 26 26 H 1.08997 * 109.47356 * 269.95741 * 1 2 3 27 27 H 1.09003 * 109.47078 * 29.95732 * 1 2 3 28 28 H 1.09003 * 109.46942 * 149.95898 * 1 2 3 29 29 H 1.09006 * 109.47482 * 329.69383 * 6 5 4 30 30 H 1.09011 * 109.47390 * 209.69466 * 6 5 4 31 31 H 0.97000 * 119.99812 * 359.97438 * 7 6 5 32 32 H 0.97003 * 119.99835 * 354.98000 * 10 8 7 33 33 H 1.08003 * 120.66226 * 0.02782 * 12 11 10 34 34 H 0.96996 * 119.99658 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.43403 * 179.97438 * 22 13 12 36 36 H 1.08003 * 119.36921 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5098 0.8484 0.0049 5 6 3.8937 -0.3875 -0.0013 6 6 5.3232 -0.8642 -0.0023 7 7 5.7872 -1.0192 1.3786 8 6 7.0461 -1.4331 1.6240 9 8 7.7952 -1.6827 0.6995 10 7 7.4748 -1.5704 2.8945 11 6 8.7402 -2.0977 3.1503 12 6 9.1306 -2.3398 4.4585 13 6 10.4126 -2.8731 4.6932 14 6 10.8619 -3.1389 6.0089 15 1 11.5853 -3.9213 6.1849 16 6 10.3683 -2.3874 7.0825 17 7 9.6457 -1.3214 6.8567 18 14 10.7422 -2.9079 8.8370 19 1 11.5724 -4.1390 8.8219 20 1 11.4803 -1.8211 9.5293 21 1 9.4705 -3.1778 9.5550 22 6 11.2367 -3.1338 3.5771 23 6 10.7648 -2.8624 2.3244 24 7 9.5542 -2.3675 2.1404 25 16 2.5061 -1.3905 -0.0010 26 1 -0.3634 -0.0008 1.0276 27 1 -0.3633 0.8904 -0.5132 28 1 -0.3633 -0.8896 -0.5145 29 1 5.9493 -0.1346 -0.5162 30 1 5.3861 -1.8233 -0.5166 31 1 5.1898 -0.8198 2.1163 32 1 6.9031 -1.3025 3.6309 33 1 8.4646 -2.1245 5.2809 34 1 9.3041 -0.8006 7.6003 35 1 12.2273 -3.5424 3.7120 36 1 11.3921 -3.0599 1.4677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426071246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:27 Heat of formation + Delta-G solvation = 79.086810 kcal Electronic energy + Delta-G solvation = -22606.205289 eV Core-core repulsion = 19025.242641 eV Total energy + Delta-G solvation = -3580.962648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.084 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67208 -39.85985 -38.11279 -35.36854 -34.25245 -33.75566 -33.18922 -30.57859 -30.22582 -28.52079 -26.76431 -25.98711 -24.66600 -22.04932 -21.73301 -20.38239 -20.08803 -19.69357 -18.21969 -17.70530 -16.55836 -16.09144 -15.43754 -15.33448 -15.20333 -14.72213 -14.32766 -14.20381 -13.88345 -13.79852 -13.54939 -13.37117 -13.09570 -12.89294 -12.75387 -12.59855 -12.24700 -11.44478 -11.21188 -10.92572 -10.82137 -10.56985 -10.32607 -10.21304 -10.13029 -10.04805 -9.79458 -9.62619 -9.40407 -9.02154 -7.95441 -7.74833 -7.05296 -6.76402 -4.62841 -0.03740 0.48196 0.96705 2.11483 2.66876 2.78656 2.97726 3.01889 3.07198 3.22455 3.55467 3.77389 3.85820 4.08605 4.44396 4.49572 4.70824 4.76257 4.88703 5.08289 5.31952 5.38595 5.44608 5.66941 5.91316 6.39455 6.51386 6.58426 6.78304 6.93818 7.10848 7.18584 7.39611 7.46722 7.85678 8.07362 8.17903 8.30394 8.44626 8.71340 8.75778 9.07119 9.69514 10.10485 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002518 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.234167 B =11118.333131 C =12119.714316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.020 4.020 3 N -0.263 5.263 4 N -0.238 5.238 5 C -0.036 4.036 6 C 0.227 3.773 7 N -0.751 5.751 8 C 0.697 3.303 9 O -0.528 6.528 10 N -0.665 5.665 11 C 0.353 3.647 12 C -0.239 4.239 13 C 0.144 3.856 14 C -0.456 4.456 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.796 5.796 18 Si 0.914 3.086 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.272 1.272 22 C -0.280 4.280 23 C 0.119 3.881 24 N -0.551 5.551 25 S 0.193 5.807 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.393 0.607 32 H 0.405 0.595 33 H 0.129 0.871 34 H 0.280 0.720 35 H 0.102 0.898 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.335 -0.218 -7.585 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.298 4.298 3 N -0.102 5.102 4 N -0.076 5.076 5 C -0.315 4.315 6 C 0.098 3.902 7 N -0.412 5.412 8 C 0.396 3.604 9 O -0.399 6.399 10 N -0.312 5.312 11 C 0.127 3.873 12 C -0.265 4.265 13 C 0.136 3.864 14 C -0.487 4.487 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.422 5.422 18 Si 0.738 3.262 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.304 4.304 23 C -0.035 4.035 24 N -0.270 5.270 25 S 0.436 5.564 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.227 0.773 32 H 0.240 0.760 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.010 0.249 -9.263 20.254 hybrid contribution -0.159 0.200 2.490 2.503 sum -18.169 0.449 -6.773 19.396 Atomic orbital electron populations 1.20415 0.83769 1.04836 1.04547 1.29378 1.04557 0.92185 1.03673 1.71522 0.96838 1.26775 1.15035 1.71506 1.06448 1.17009 1.12669 1.29239 1.03130 0.92739 1.06409 1.19362 0.83999 1.02183 0.84630 1.45104 1.13714 1.75222 1.07121 1.15948 0.81167 0.79097 0.84198 1.91034 1.53353 1.53263 1.42220 1.42506 1.16824 1.65551 1.06353 1.17950 0.84187 0.94906 0.90263 1.21553 0.98941 1.12852 0.93161 1.17586 0.89267 0.86707 0.92863 1.19596 1.22160 1.16498 0.90490 0.89994 1.25941 0.93049 0.93507 1.01778 1.69761 1.26654 1.11756 1.34040 0.86168 0.79152 0.79797 0.81060 1.18360 1.19903 1.19747 1.21713 1.00764 1.13963 0.93927 1.21490 0.91234 0.95387 0.95405 1.67197 1.05135 1.21512 1.33150 1.83863 0.97259 1.11104 1.64199 0.88898 0.88693 0.89543 0.88066 0.88875 0.77337 0.76019 0.85323 0.90893 0.87945 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.48 36.00 0.38 0.04 16 2 C -0.02 -0.17 7.53 -13.30 -0.10 -0.27 16 3 N -0.26 -3.21 11.66 32.58 0.38 -2.83 16 4 N -0.24 -3.14 11.66 32.58 0.38 -2.76 16 5 C -0.04 -0.39 6.90 -13.30 -0.09 -0.49 16 6 C 0.23 2.71 6.27 -5.20 -0.03 2.68 16 7 N -0.75 -10.21 5.55 -66.41 -0.37 -10.58 16 8 C 0.70 13.12 8.52 -86.92 -0.74 12.38 16 9 O -0.53 -12.14 14.60 5.29 0.08 -12.06 16 10 N -0.66 -12.97 5.40 -15.86 -0.09 -13.05 16 11 C 0.35 8.52 7.42 -154.68 -1.15 7.37 16 12 C -0.24 -6.02 8.60 -38.45 -0.33 -6.35 16 13 C 0.14 3.77 5.58 -106.55 -0.59 3.17 16 14 C -0.46 -11.64 9.13 -37.65 -0.34 -11.98 16 15 H 0.08 2.01 7.87 -52.49 -0.41 1.59 16 16 C 0.08 1.81 5.30 -17.34 -0.09 1.71 16 17 N -0.80 -19.58 10.83 55.55 0.60 -18.98 16 18 Si 0.91 17.91 29.57 -169.99 -5.03 12.88 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 C -0.28 -6.83 9.85 -39.07 -0.38 -7.21 16 23 C 0.12 2.84 11.10 -18.05 -0.20 2.64 16 24 N -0.55 -14.06 7.86 -12.76 -0.10 -14.16 16 25 S 0.19 1.50 23.04 -107.50 -2.48 -0.98 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.39 4.43 8.48 -40.82 -0.35 4.08 16 32 H 0.41 6.50 8.72 -40.82 -0.36 6.14 16 33 H 0.13 3.21 6.28 -52.48 -0.33 2.88 16 34 H 0.28 6.24 8.29 -40.82 -0.34 5.91 16 35 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 36 H 0.12 2.57 8.06 -52.48 -0.42 2.14 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -33.61 334.62 -8.80 -42.41 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -3.54 Total: 11.35 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -3.68 Total: 3.71 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 0.81 Total: -62.35 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.48 Total: -0.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.61 -8.80 -42.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426071246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.494 kcal (2) G-P(sol) polarization free energy of solvation -33.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds