Wall clock time and date at job start Tue Mar 31 2020 12:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29415 * 125.70148 * 2 1 4 4 N 1.26391 * 116.48175 * 179.75110 * 3 2 1 5 5 C 1.29416 * 116.47423 * 0.53163 * 4 3 2 6 6 C 1.50695 * 125.69803 * 179.76797 * 5 4 3 7 7 N 1.46499 * 109.47310 * 89.69813 * 6 5 4 8 8 C 1.34771 * 120.00268 * 180.28019 * 7 6 5 9 9 O 1.21583 * 120.00098 * 359.71466 * 8 7 6 10 10 N 1.34780 * 120.00238 * 179.72225 * 8 7 6 11 11 C 1.39453 * 120.00239 * 174.97278 * 10 8 7 12 12 C 1.38649 * 119.64883 * 185.35819 * 11 10 8 13 13 C 1.40818 * 118.67256 * 179.97438 * 12 11 10 14 14 C 1.41545 * 120.99701 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00352 * 151.72805 * 14 13 12 16 16 C 1.40032 * 120.00183 * 331.73502 * 14 13 12 17 17 N 1.30749 * 119.99490 * 350.14838 * 16 14 13 18 18 Si 1.86793 * 120.00334 * 170.15120 * 16 14 13 19 19 H 1.48498 * 109.47126 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47485 * 119.99883 * 18 16 14 21 21 H 1.48508 * 109.47125 * 239.99494 * 18 16 14 22 22 C 1.41166 * 118.00911 * 0.02562 * 13 12 11 23 23 C 1.36587 * 119.12337 * 359.97438 * 22 13 12 24 24 N 1.32069 * 121.26397 * 359.72977 * 23 22 13 25 25 S 1.71217 * 108.60514 * 359.50877 * 5 4 3 26 26 H 1.08997 * 109.47356 * 269.95741 * 1 2 3 27 27 H 1.09003 * 109.47078 * 29.95732 * 1 2 3 28 28 H 1.09003 * 109.46942 * 149.95898 * 1 2 3 29 29 H 1.09006 * 109.47482 * 329.69383 * 6 5 4 30 30 H 1.09011 * 109.47390 * 209.69466 * 6 5 4 31 31 H 0.97000 * 119.99812 * 359.97438 * 7 6 5 32 32 H 0.97003 * 119.99835 * 354.98000 * 10 8 7 33 33 H 1.08003 * 120.66226 * 0.02782 * 12 11 10 34 34 H 0.96996 * 119.99658 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.43403 * 179.97438 * 22 13 12 36 36 H 1.08003 * 119.36921 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5098 0.8484 0.0049 5 6 3.8937 -0.3875 -0.0013 6 6 5.3232 -0.8642 -0.0023 7 7 5.7872 -1.0192 1.3786 8 6 7.0461 -1.4331 1.6240 9 8 7.7952 -1.6827 0.6995 10 7 7.4748 -1.5704 2.8945 11 6 8.7402 -2.0977 3.1503 12 6 9.1306 -2.3398 4.4585 13 6 10.4126 -2.8731 4.6932 14 6 10.8619 -3.1389 6.0089 15 1 11.5853 -3.9213 6.1849 16 6 10.3683 -2.3874 7.0825 17 7 9.6457 -1.3214 6.8567 18 14 10.7422 -2.9079 8.8370 19 1 11.5724 -4.1390 8.8219 20 1 11.4803 -1.8211 9.5293 21 1 9.4705 -3.1778 9.5550 22 6 11.2367 -3.1338 3.5771 23 6 10.7648 -2.8624 2.3244 24 7 9.5542 -2.3675 2.1404 25 16 2.5061 -1.3905 -0.0010 26 1 -0.3634 -0.0008 1.0276 27 1 -0.3633 0.8904 -0.5132 28 1 -0.3633 -0.8896 -0.5145 29 1 5.9493 -0.1346 -0.5162 30 1 5.3861 -1.8233 -0.5166 31 1 5.1898 -0.8198 2.1163 32 1 6.9031 -1.3025 3.6309 33 1 8.4646 -2.1245 5.2809 34 1 9.3041 -0.8006 7.6003 35 1 12.2273 -3.5424 3.7120 36 1 11.3921 -3.0599 1.4677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001426071246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:25 Heat of formation + Delta-G solvation = 55.247385 kcal Electronic energy + Delta-G solvation = -22607.239044 eV Core-core repulsion = 19025.242641 eV Total energy + Delta-G solvation = -3581.996403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.084 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.48127 -41.44067 -39.85191 -36.62542 -35.95508 -35.50413 -33.98513 -32.42124 -31.30739 -30.04024 -27.92453 -27.62391 -25.49105 -23.84443 -23.42258 -21.81054 -21.11647 -20.45434 -19.67504 -19.43323 -17.97322 -17.24081 -16.91146 -16.67014 -16.44116 -16.06050 -16.02585 -15.74519 -15.09820 -14.92096 -14.67992 -14.34575 -14.33808 -14.26917 -13.90074 -13.74337 -13.32102 -13.15704 -12.87359 -12.68643 -12.10082 -11.85523 -11.57995 -11.54222 -11.42093 -11.31043 -11.18255 -10.88927 -10.70368 -10.28148 -9.88103 -9.62370 -8.86090 -8.57977 -6.56009 -0.76630 -0.20564 0.24285 0.83249 1.01219 1.22973 1.42580 1.56050 1.57187 1.70100 2.20234 2.22538 2.75843 2.85607 3.13832 3.43977 3.74152 3.76430 4.08980 4.16589 4.39869 4.46568 4.61795 4.71849 4.72491 4.83946 4.93682 5.07192 5.10417 5.20094 5.24946 5.50034 5.64808 5.74686 5.97772 6.26214 6.56657 6.79205 6.83705 6.89354 7.41069 7.52494 7.87220 8.31457 Molecular weight = 319.08amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.002518 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.234167 B =11118.333131 C =12119.714316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.016 4.016 3 N -0.303 5.303 4 N -0.271 5.271 5 C -0.058 4.058 6 C 0.229 3.771 7 N -0.729 5.729 8 C 0.698 3.302 9 O -0.571 6.571 10 N -0.658 5.658 11 C 0.352 3.648 12 C -0.255 4.255 13 C 0.115 3.885 14 C -0.484 4.484 15 H 0.084 0.916 16 C 0.036 3.964 17 N -0.820 5.820 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.262 1.262 22 C -0.292 4.292 23 C 0.113 3.887 24 N -0.575 5.575 25 S 0.263 5.737 26 H 0.109 0.891 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.407 0.593 32 H 0.420 0.580 33 H 0.125 0.875 34 H 0.290 0.710 35 H 0.117 0.883 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.227 -0.965 -6.791 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.294 4.294 3 N -0.142 5.142 4 N -0.110 5.110 5 C -0.337 4.337 6 C 0.101 3.899 7 N -0.389 5.389 8 C 0.397 3.603 9 O -0.445 6.445 10 N -0.307 5.307 11 C 0.124 3.876 12 C -0.281 4.281 13 C 0.106 3.894 14 C -0.515 4.515 15 H 0.102 0.898 16 C -0.180 4.180 17 N -0.446 5.446 18 Si 0.810 3.190 19 H -0.181 1.181 20 H -0.193 1.193 21 H -0.187 1.187 22 C -0.316 4.316 23 C -0.040 4.040 24 N -0.295 5.295 25 S 0.507 5.493 26 H 0.127 0.873 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.243 0.757 32 H 0.257 0.743 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.135 0.865 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.973 -0.477 -8.472 21.701 hybrid contribution 0.290 0.436 2.183 2.245 sum -19.684 -0.041 -6.289 20.664 Atomic orbital electron populations 1.20700 0.80872 1.06327 1.05986 1.30090 1.06298 0.91988 1.00984 1.71505 0.96801 1.28497 1.17420 1.71465 1.07501 1.18506 1.13525 1.28970 1.03574 0.93392 1.07790 1.19357 0.84830 1.02456 0.83231 1.44850 1.11983 1.73442 1.08623 1.16021 0.82171 0.78799 0.83271 1.91002 1.55012 1.55184 1.43258 1.42384 1.15734 1.65160 1.07471 1.18137 0.85387 0.94186 0.89857 1.21523 0.98955 1.14123 0.93489 1.18025 0.90082 0.87371 0.93883 1.19870 1.23152 1.17304 0.91169 0.89824 1.26806 0.92431 0.93023 1.05704 1.69801 1.26701 1.12275 1.35843 0.85043 0.79244 0.79347 0.75385 1.18135 1.19320 1.18692 1.21895 1.01383 1.14475 0.93846 1.21944 0.91255 0.94542 0.96258 1.67329 1.05918 1.22492 1.33722 1.83586 0.94405 1.08833 1.62475 0.87258 0.88375 0.86863 0.89521 0.87690 0.75695 0.74273 0.85703 0.89908 0.86532 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.48 71.24 0.75 0.29 16 2 C -0.02 -0.24 7.53 88.46 0.67 0.43 16 3 N -0.30 -7.18 11.66 -50.85 -0.59 -7.78 16 4 N -0.27 -7.10 11.66 -50.85 -0.59 -7.69 16 5 C -0.06 -1.22 6.90 88.46 0.61 -0.61 16 6 C 0.23 5.40 6.27 85.63 0.54 5.94 16 7 N -0.73 -19.41 5.55 -482.30 -2.68 -22.09 16 8 C 0.70 26.29 8.52 179.06 1.53 27.82 16 9 O -0.57 -26.52 14.60 -3.98 -0.06 -26.58 16 10 N -0.66 -25.79 5.40 -322.36 -1.74 -27.53 16 11 C 0.35 17.23 7.42 132.76 0.99 18.22 16 12 C -0.25 -13.08 8.60 23.00 0.20 -12.88 16 13 C 0.11 6.11 5.58 -21.11 -0.12 5.99 16 14 C -0.48 -24.94 9.13 23.52 0.21 -24.73 16 15 H 0.08 4.13 7.87 -2.91 -0.02 4.11 16 16 C 0.04 1.73 5.30 85.29 0.45 2.18 16 17 N -0.82 -40.28 10.83 21.84 0.24 -40.04 16 18 Si 0.99 35.97 29.57 68.60 2.03 38.00 16 19 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 20 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 21 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 22 C -0.29 -14.45 9.85 22.60 0.22 -14.23 16 23 C 0.11 5.46 11.10 84.27 0.94 6.40 16 24 N -0.57 -29.69 7.86 -194.27 -1.53 -31.21 16 25 S 0.26 3.47 23.04 -56.49 -1.30 2.16 16 26 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.41 8.73 8.48 -92.71 -0.79 7.94 16 32 H 0.42 13.39 8.72 -92.71 -0.81 12.58 16 33 H 0.13 6.36 6.28 -2.91 -0.02 6.34 16 34 H 0.29 12.75 8.29 -92.71 -0.77 11.99 16 35 H 0.12 5.25 8.06 -2.91 -0.02 5.22 16 36 H 0.15 6.17 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -74.08 334.62 0.33 -73.76 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -0.43 Total: 34.18 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.98 Total: 14.82 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -6.89 Total: -136.34 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.06 Total: -26.58 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.30 Total: 2.16 kcal Total: -74.08 0.33 -73.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426071246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.004 kcal (2) G-P(sol) polarization free energy of solvation -74.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds