Wall clock time and date at job start Tue Mar 31 2020 13:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99871 * 2 1 4 4 H 1.48493 * 109.46942 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46904 * 299.99427 * 3 2 1 6 6 H 1.48496 * 109.47461 * 59.99036 * 3 2 1 7 7 C 1.37871 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00046 * 172.53247 * 7 2 1 9 9 C 1.50700 * 120.00301 * 352.53754 * 7 2 1 10 10 C 1.53000 * 115.54807 * 294.65693 * 9 7 2 11 11 N 1.46497 * 109.47097 * 275.69726 * 10 9 7 12 12 C 1.39528 * 119.99934 * 184.73451 * 11 10 9 13 13 C 1.38780 * 120.12539 * 5.60652 * 12 11 10 14 14 C 1.38120 * 120.05291 * 179.97438 * 13 12 11 15 15 C 1.38507 * 120.30971 * 359.79218 * 14 13 12 16 16 Cl 1.73600 * 119.87777 * 180.25081 * 15 14 13 17 17 C 1.38112 * 120.24556 * 0.46626 * 15 14 13 18 18 C 1.39258 * 119.94210 * 359.50975 * 17 15 14 19 19 C 1.48367 * 120.15256 * 180.23237 * 18 17 15 20 20 N 1.34079 * 126.68209 * 174.32728 * 19 18 17 21 21 N 1.28979 * 107.26646 * 179.89545 * 20 19 18 22 22 N 1.28727 * 108.95562 * 0.37128 * 21 20 19 23 23 H 0.97006 * 125.34194 * 179.73869 * 22 21 20 24 24 N 1.28875 * 109.32578 * 359.76210 * 22 21 20 25 25 C 1.52995 * 117.51754 * 80.35802 * 9 7 2 26 26 C 1.52998 * 117.49893 * 148.98963 * 9 7 2 27 27 H 0.97005 * 120.00147 * 5.01706 * 1 2 3 28 28 H 1.09004 * 109.47140 * 155.69852 * 10 9 7 29 29 H 1.09003 * 109.47080 * 35.69419 * 10 9 7 30 30 H 0.96998 * 119.99985 * 4.74199 * 11 10 9 31 31 H 1.08000 * 119.97407 * 359.97438 * 13 12 11 32 32 H 1.08006 * 119.84582 * 180.02562 * 14 13 12 33 33 H 1.07996 * 120.03438 * 179.78827 * 17 15 14 34 34 H 1.09007 * 117.50099 * 214.97172 * 25 9 7 35 35 H 1.09004 * 117.50205 * 359.97438 * 25 9 7 36 36 H 1.09001 * 117.50020 * 359.97173 * 26 9 7 37 37 H 1.09005 * 117.50100 * 144.97370 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0777 -1.1980 -0.1210 9 6 1.2606 -2.4935 0.1706 10 6 0.5794 -2.6914 1.5262 11 7 1.5495 -3.2216 2.4875 12 6 1.1358 -3.5781 3.7715 13 6 -0.2109 -3.5419 4.1046 14 6 -0.6187 -3.8957 5.3759 15 6 0.3107 -4.2920 6.3232 16 17 -0.2150 -4.7405 7.9157 17 6 1.6547 -4.3275 6.0069 18 6 2.0773 -3.9736 4.7281 19 6 3.5194 -4.0150 4.3817 20 7 4.0589 -3.8065 3.1720 21 7 5.3367 -3.9303 3.2963 22 7 5.6123 -4.2127 4.5215 23 1 6.5029 -4.3601 4.8768 24 7 4.5195 -4.2696 5.2023 25 6 0.5653 -3.0764 -1.0612 26 6 1.8364 -3.7325 -0.5182 27 1 -0.4850 0.8369 -0.0735 28 1 -0.2468 -3.3942 1.4186 29 1 0.1985 -1.7349 1.8845 30 1 2.4793 -3.3247 2.2313 31 1 -0.9406 -3.2369 3.3691 32 1 -1.6677 -3.8667 5.6314 33 1 2.3768 -4.6339 6.7492 34 1 -0.3776 -3.6009 -0.9060 35 1 0.6453 -2.5198 -1.9950 36 1 2.7529 -3.6075 -1.0947 37 1 1.7301 -4.6885 -0.0054 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676030.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:44 Heat of formation + Delta-G solvation = 171.183726 kcal Electronic energy + Delta-G solvation = -23957.771479 eV Core-core repulsion = 20378.758747 eV Total energy + Delta-G solvation = -3579.012732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 319.089 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.31558 -39.40828 -37.12211 -36.25126 -34.46404 -33.87208 -33.43366 -32.05776 -30.47430 -28.96068 -25.99611 -25.24517 -24.62677 -24.01577 -21.61848 -21.46283 -20.94246 -19.31601 -18.99344 -17.19456 -17.00692 -16.57145 -16.03899 -15.24854 -14.69726 -14.53252 -14.14899 -14.01090 -13.70103 -13.64079 -13.32763 -12.75873 -12.41263 -12.18974 -11.93239 -11.66479 -11.52063 -11.47529 -11.21761 -11.01483 -10.98331 -10.85600 -10.64214 -10.61862 -10.50031 -10.27044 -9.59324 -9.45601 -8.88905 -8.70958 -8.60058 -8.22616 -6.90428 -6.10535 -4.14840 0.89504 1.32345 1.65555 2.30902 2.41527 2.48924 3.24769 3.34049 3.38432 3.80508 3.95233 4.04821 4.34115 4.36017 5.03785 5.10172 5.12704 5.36283 5.43163 5.54086 5.59147 5.81246 5.96739 6.05220 6.18563 6.29864 6.34232 6.36222 6.48065 6.49948 6.60149 6.67685 6.73002 6.91174 7.02644 7.35720 7.42745 7.83345 7.86248 8.20798 8.34972 8.55485 8.86058 9.49777 10.97479 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.004480 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.312816 B = 6248.705870 C = 7308.357367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.491 4.491 8 H 0.062 0.938 9 C 0.036 3.964 10 C 0.154 3.846 11 N -0.698 5.698 12 C 0.278 3.722 13 C -0.196 4.196 14 C -0.033 4.033 15 C -0.120 4.120 16 Cl -0.089 7.089 17 C -0.014 4.014 18 C -0.119 4.119 19 C 0.244 3.756 20 N -0.276 5.276 21 N -0.042 5.042 22 N -0.232 5.232 23 H 0.473 0.527 24 N -0.308 5.308 25 C -0.165 4.165 26 C -0.203 4.203 27 H 0.261 0.739 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.419 0.581 31 H 0.141 0.859 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 -9.314 11.779 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.528 4.528 8 H 0.080 0.920 9 C 0.035 3.965 10 C 0.031 3.969 11 N -0.324 5.324 12 C 0.160 3.840 13 C -0.219 4.219 14 C -0.054 4.054 15 C -0.149 4.149 16 Cl -0.060 7.060 17 C -0.035 4.035 18 C -0.129 4.129 19 C -0.035 4.035 20 N -0.150 5.150 21 N -0.038 5.038 22 N -0.078 5.078 23 H 0.326 0.674 24 N -0.160 5.160 25 C -0.203 4.203 26 C -0.241 4.241 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.982 -9.062 11.305 15.026 hybrid contribution 0.911 0.801 0.470 1.301 sum 4.893 -8.260 11.775 15.193 Atomic orbital electron populations 1.69955 1.05813 1.26833 1.48997 1.24946 0.94814 0.98883 0.94465 0.86594 0.80396 0.83810 0.77639 1.19688 1.20983 1.20914 1.20500 0.93288 0.88642 1.50414 0.92023 1.18966 0.97713 0.91788 0.88033 1.21246 0.89347 0.97396 0.88937 1.46017 1.14521 1.63313 1.08566 1.17983 0.92163 0.88429 0.85440 1.20625 0.93907 1.09822 0.97571 1.20873 0.99086 0.93950 0.91445 1.20160 0.93560 1.13763 0.87421 1.98317 1.90798 1.91959 1.24953 1.20570 0.94061 0.94611 0.94259 1.16419 0.84506 1.17249 0.94746 1.23491 0.94991 0.99084 0.85902 1.75612 0.98513 1.19338 1.21499 1.78909 1.10101 1.13105 1.01643 1.47653 1.10306 1.44658 1.05163 0.67362 1.74896 0.92550 1.24124 1.24415 1.22727 0.93419 1.03619 1.00565 1.22854 0.97679 0.96886 1.06636 0.92894 0.94250 0.90052 0.73617 0.84175 0.85033 0.84724 0.91700 0.89977 0.90329 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.71 12.59 55.43 0.70 -23.01 16 2 C 0.07 1.91 5.23 -17.82 -0.09 1.81 16 3 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.49 -12.89 8.82 -34.44 -0.30 -13.19 16 8 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 9 C 0.04 0.84 1.32 -155.66 -0.20 0.63 16 10 C 0.15 3.29 4.92 -4.04 -0.02 3.27 16 11 N -0.70 -13.70 5.56 -58.43 -0.32 -14.03 16 12 C 0.28 4.80 6.65 -83.52 -0.56 4.25 16 13 C -0.20 -3.01 9.28 -39.42 -0.37 -3.38 16 14 C -0.03 -0.44 9.81 -39.53 -0.39 -0.83 16 15 C -0.12 -1.60 6.31 -39.53 -0.25 -1.85 16 16 Cl -0.09 -1.06 28.95 -51.86 -1.50 -2.56 16 17 C -0.01 -0.19 9.47 -39.25 -0.37 -0.56 16 18 C -0.12 -1.92 5.89 -104.72 -0.62 -2.53 16 19 C 0.24 3.95 7.89 -156.28 -1.23 2.72 16 20 N -0.28 -4.82 9.48 32.14 0.30 -4.52 16 21 N -0.04 -0.62 13.47 60.35 0.81 0.19 16 22 N -0.23 -2.55 7.90 60.35 0.48 -2.08 16 23 H 0.47 2.64 8.96 -340.35 -3.05 -0.41 16 24 N -0.31 -4.15 12.10 32.16 0.39 -3.76 16 25 C -0.16 -3.65 9.88 -26.73 -0.26 -3.91 16 26 C -0.20 -4.28 9.78 -26.73 -0.26 -4.54 16 27 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 28 H 0.04 0.78 7.24 -51.93 -0.38 0.41 16 29 H 0.08 1.94 7.26 -51.93 -0.38 1.57 16 30 H 0.42 8.53 4.99 -40.82 -0.20 8.33 16 31 H 0.14 2.12 6.62 -52.49 -0.35 1.77 16 32 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 33 H 0.13 1.69 7.89 -52.49 -0.41 1.28 16 34 H 0.06 1.33 8.06 -51.93 -0.42 0.91 16 35 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -28.86 335.81 -10.46 -39.32 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.42 Total: 7.71 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -4.93 Total: -18.11 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 2.36 Total: -47.20 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.86 -10.46 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676030.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.499 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds