Wall clock time and date at job start Tue Mar 31 2020 12:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46784 * 126.91141 * 2 1 4 4 C 1.39400 * 134.37072 * 359.97438 * 3 2 1 5 5 C 1.36732 * 119.72001 * 180.31603 * 4 3 2 6 6 C 1.38738 * 120.41457 * 0.02562 * 5 4 3 7 7 C 1.37855 * 120.69010 * 0.02562 * 6 5 4 8 8 C 1.38944 * 119.81166 * 359.96425 * 7 6 5 9 9 O 1.34806 * 133.49668 * 180.02562 * 8 7 6 10 10 C 1.33997 * 126.90216 * 179.86486 * 2 1 3 11 11 C 1.50698 * 124.92560 * 359.97438 * 10 2 1 12 12 H 1.09002 * 109.46867 * 14.72312 * 11 10 2 13 13 C 1.53000 * 109.47254 * 254.72757 * 11 10 2 14 14 N 1.46496 * 109.47526 * 134.72419 * 11 10 2 15 15 C 1.34777 * 120.00258 * 205.00423 * 14 11 10 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 11 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 11 18 18 S 1.81003 * 109.46853 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99846 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99637 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00513 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99570 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47213 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46950 * 120.00258 * 23 21 19 26 26 H 1.48503 * 109.47177 * 240.00017 * 23 21 19 27 27 H 1.09003 * 109.47110 * 270.13724 * 1 2 3 28 28 H 1.09003 * 109.46971 * 30.13195 * 1 2 3 29 29 H 1.08997 * 109.47707 * 150.13932 * 1 2 3 30 30 H 1.08003 * 120.13858 * 0.34502 * 4 3 2 31 31 H 1.07997 * 119.79408 * 179.97438 * 5 4 3 32 32 H 1.08005 * 119.66077 * 179.97438 * 6 5 4 33 33 H 1.07996 * 120.09398 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.47229 * 180.02562 * 13 11 10 35 35 H 1.09002 * 109.46821 * 299.99584 * 13 11 10 36 36 H 1.08992 * 109.47302 * 59.99789 * 13 11 10 37 37 H 0.96999 * 119.99694 * 24.99813 * 14 11 10 38 38 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 39 39 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 40 40 H 0.96995 * 120.00407 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3885 1.1736 0.0000 4 6 2.1772 2.5515 -0.0004 5 6 3.2482 3.4015 -0.0068 6 6 4.5421 2.9010 -0.0134 7 6 4.7707 1.5415 -0.0141 8 6 3.6963 0.6605 -0.0075 9 8 3.5989 -0.6841 -0.0059 10 6 2.3116 -1.0715 0.0025 11 6 1.8416 -2.5033 0.0065 12 1 0.7838 -2.5392 -0.2543 13 6 2.0440 -3.1028 1.3995 14 7 2.6123 -3.2731 -0.9731 15 6 2.0870 -4.3882 -1.5180 16 8 0.9764 -4.7548 -1.1971 17 6 2.8798 -5.1797 -2.5262 18 16 1.9112 -6.6100 -3.0668 19 6 3.0435 -7.3331 -4.2067 20 1 4.0046 -6.8717 -4.3793 21 6 2.6999 -8.4952 -4.8835 22 7 1.5279 -9.0567 -4.6742 23 14 3.9002 -9.2615 -6.0925 24 1 5.1380 -8.4430 -6.1472 25 1 4.2369 -10.6385 -5.6502 26 1 3.2799 -9.3125 -7.4408 27 1 -0.3633 0.0025 1.0277 28 1 -0.3633 0.8888 -0.5159 29 1 -0.3634 -0.8912 -0.5116 30 1 1.1718 2.9460 0.0047 31 1 3.0859 4.4692 -0.0076 32 1 5.3792 3.5835 -0.0188 33 1 5.7819 1.1624 -0.0189 34 1 1.7045 -4.1386 1.4022 35 1 3.1018 -3.0669 1.6602 36 1 1.4705 -2.5301 2.1283 37 1 3.5007 -2.9801 -1.2296 38 1 3.1075 -4.5490 -3.3855 39 1 3.8088 -5.5218 -2.0701 40 1 1.2879 -9.8690 -5.1469 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046650644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:42 Heat of formation + Delta-G solvation = -38.845953 kcal Electronic energy + Delta-G solvation = -23162.265836 eV Core-core repulsion = 19647.436833 eV Total energy + Delta-G solvation = -3514.829004 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.60003 -40.79192 -38.88092 -36.84051 -34.95705 -34.59239 -32.70669 -31.51490 -30.54362 -29.85838 -28.11484 -27.67110 -25.13699 -23.86051 -22.56297 -21.60246 -21.05787 -19.90740 -18.48207 -18.08765 -17.87525 -17.35320 -16.90150 -16.87683 -16.48433 -16.12706 -15.82003 -15.09064 -15.00840 -14.79596 -14.58497 -14.47348 -14.27527 -14.07487 -13.70257 -13.48650 -13.27805 -13.20045 -13.17070 -13.01819 -12.92058 -12.72511 -12.59915 -12.32586 -11.83184 -11.72378 -11.16553 -11.06749 -10.82721 -10.34609 -10.29789 -9.61541 -9.09202 -8.67352 -8.35735 -6.13461 -0.12949 0.37583 1.11908 1.28738 1.40810 1.45568 1.48855 1.57696 1.61827 2.18908 2.26343 2.75233 2.98488 3.17719 3.29205 3.62455 3.78518 3.81736 3.98843 4.03194 4.10195 4.16655 4.27006 4.36202 4.47144 4.47796 4.54788 4.61651 4.70410 4.74103 4.78700 4.92962 5.05421 5.09482 5.23274 5.24702 5.36092 5.41619 5.48163 5.50904 5.73428 6.15212 6.19327 6.33837 7.05836 7.10060 8.73669 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.022443 B = 0.002469 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.286509 B =11337.496104 C =11994.424630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.078 4.078 5 C -0.135 4.135 6 C -0.087 4.087 7 C -0.122 4.122 8 C 0.029 3.971 9 O -0.200 6.200 10 C 0.006 3.994 11 C 0.227 3.773 12 H 0.112 0.888 13 C -0.157 4.157 14 N -0.715 5.715 15 C 0.542 3.458 16 O -0.553 6.553 17 C -0.131 4.131 18 S -0.142 6.142 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.273 1.273 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.144 0.856 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.414 0.586 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.650 27.376 11.898 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.096 4.096 5 C -0.153 4.153 6 C -0.105 4.105 7 C -0.140 4.140 8 C -0.018 4.018 9 O -0.103 6.103 10 C -0.042 4.042 11 C 0.123 3.877 12 H 0.130 0.870 13 C -0.215 4.215 14 N -0.369 5.369 15 C 0.328 3.672 16 O -0.431 6.431 17 C -0.282 4.282 18 S 0.085 5.915 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.199 1.199 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.177 0.823 32 H 0.184 0.816 33 H 0.163 0.837 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.250 0.750 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.911 26.463 12.404 29.487 hybrid contribution 1.993 -0.349 -1.180 2.343 sum 5.904 26.114 11.224 29.031 Atomic orbital electron populations 1.20335 0.86875 1.03574 1.03557 1.21214 0.97725 0.90163 1.07066 1.20078 0.92282 0.95257 1.07383 1.20616 1.01203 0.89764 0.98023 1.21213 0.91853 1.01392 1.00848 1.21406 0.98718 0.93363 0.96976 1.20343 0.96873 0.91870 1.04903 1.20107 0.96765 0.81014 1.03935 1.83866 1.27607 1.21794 1.77010 1.22007 0.80960 0.95600 1.05585 1.19549 0.96622 0.81166 0.90380 0.87024 1.22164 1.03352 1.01581 0.94417 1.45900 1.21072 1.25866 1.44083 1.20010 0.86016 0.80473 0.80694 1.90691 1.21098 1.68953 1.62319 1.23378 1.03204 1.00703 1.00960 1.85502 1.26014 1.25706 1.54304 1.23230 1.04314 1.13712 1.28204 0.90062 1.26117 0.97800 0.96407 0.98800 1.70175 1.22141 1.20091 1.42245 0.84909 0.77920 0.77980 0.77152 1.18191 1.19850 1.19874 0.89438 0.89901 0.91417 0.83818 0.82290 0.81571 0.83695 0.92095 0.91427 0.89301 0.74977 0.87436 0.87191 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 10.13 71.23 0.72 -0.74 16 2 C -0.16 -3.50 6.35 -18.60 -0.12 -3.62 16 3 C -0.15 -3.18 6.38 -20.21 -0.13 -3.31 16 4 C -0.08 -1.22 10.05 22.20 0.22 -0.99 16 5 C -0.14 -1.56 9.98 22.04 0.22 -1.34 16 6 C -0.09 -1.01 10.01 22.30 0.22 -0.79 16 7 C -0.12 -2.01 10.07 22.35 0.23 -1.79 16 8 C 0.03 0.65 7.42 22.99 0.17 0.82 16 9 O -0.20 -4.95 10.32 -8.87 -0.09 -5.04 16 10 C 0.01 0.14 6.01 24.72 0.15 0.29 16 11 C 0.23 5.72 2.94 44.25 0.13 5.85 16 12 H 0.11 3.00 6.15 -2.39 -0.01 2.99 16 13 C -0.16 -3.56 9.47 71.98 0.68 -2.88 16 14 N -0.72 -20.09 5.07 -446.10 -2.26 -22.35 16 15 C 0.54 20.23 7.81 87.66 0.68 20.91 16 16 O -0.55 -24.91 15.53 -3.03 -0.05 -24.95 16 17 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 18 S -0.14 -7.91 20.57 -56.49 -1.16 -9.07 16 19 C -0.55 -31.39 9.50 67.96 0.65 -30.74 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.78 5.49 84.86 0.47 1.24 16 22 N -0.91 -55.89 13.22 21.65 0.29 -55.61 16 23 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.23 6.95 -2.39 -0.02 1.21 16 30 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 32 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 9.91 8.38 -92.71 -0.78 9.13 16 38 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 39 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -76.39 360.16 3.77 -72.61 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.29 Total: 20.49 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 4.73 Total: -21.95 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.97 Total: -77.96 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.14 Total: -30.00 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -76.39 3.77 -72.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046650644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.769 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds