Wall clock time and date at job start Tue Mar 31 2020 13:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21563 * 120.00283 * 359.72077 * 14 13 3 16 16 C 1.47730 * 119.99572 * 179.72382 * 14 13 3 17 17 C 1.39666 * 120.11728 * 359.72588 * 16 14 13 18 18 C 1.37821 * 119.87289 * 179.67598 * 17 16 14 19 19 C 1.38672 * 120.12026 * 0.61686 * 18 17 16 20 20 F 1.35102 * 119.87721 * 179.69636 * 19 18 17 21 21 C 1.38629 * 120.23953 * 359.67950 * 19 18 17 22 22 C 1.50703 * 119.94118 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47364 * 179.97438 * 22 21 19 24 24 F 1.39902 * 109.47199 * 299.97671 * 22 21 19 25 25 F 1.39896 * 109.47122 * 59.97861 * 22 21 19 26 26 C 1.37854 * 120.12153 * 359.97438 * 21 19 18 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 29 29 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.07994 * 120.06343 * 359.97438 * 17 16 14 35 35 H 1.08007 * 119.93690 * 180.29676 * 18 17 16 36 36 H 1.07997 * 120.06324 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4300 16 6 0.0487 3.3352 -2.6251 17 6 0.9409 3.3785 -3.6988 18 6 0.5707 3.9952 -4.8744 19 6 -0.6801 4.5830 -4.9881 20 9 -1.0355 5.1916 -6.1407 21 6 -1.5672 4.5482 -3.9233 22 6 -2.9250 5.1887 -4.0543 23 9 -3.6350 5.0254 -2.8600 24 9 -2.7730 6.5532 -4.3236 25 9 -3.6277 4.5823 -5.1010 26 6 -1.2099 3.9279 -2.7452 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 1.9171 2.9255 -3.6096 35 1 1.2581 4.0251 -5.7070 36 1 -1.9019 3.9010 -1.9165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:53 Heat of formation + Delta-G solvation = -211.731176 kcal Electronic energy + Delta-G solvation = -26770.623614 eV Core-core repulsion = 22140.227828 eV Total energy + Delta-G solvation = -4630.395786 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.42154 -49.40984 -47.84532 -47.82512 -40.12911 -38.27917 -35.21822 -33.04946 -32.18243 -31.43582 -30.48922 -27.18219 -26.26802 -24.18760 -22.89617 -22.79912 -20.73571 -19.59521 -18.98817 -18.71701 -18.65675 -17.71130 -17.19483 -16.60151 -16.10424 -15.78581 -15.35730 -14.85287 -14.73325 -14.67804 -14.63273 -14.38707 -14.24450 -13.97121 -13.94699 -13.59833 -13.57922 -13.27973 -12.82942 -12.74964 -12.48180 -12.02435 -11.62269 -11.49207 -11.33264 -11.05480 -10.91829 -10.40731 -10.28206 -9.78762 -9.72783 -9.35112 -9.15887 -9.13278 -8.58945 -7.99854 -6.20577 -4.30892 0.27211 0.63397 2.34734 2.63830 3.19303 3.26426 3.27433 3.37485 3.52625 3.67499 3.76138 3.90870 4.16000 4.27477 4.33164 4.65905 4.80907 4.87613 5.11293 5.23959 5.44992 5.51806 5.73202 5.88863 6.23320 6.31834 6.37531 6.57188 6.94988 7.10028 7.22141 7.29575 7.51256 7.61091 7.79062 8.08013 8.46173 8.64671 8.90531 9.36467 10.84693 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.003163 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.365342 B = 8851.152557 C = 9489.330477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.697 5.697 14 C 0.542 3.458 15 O -0.536 6.536 16 C -0.130 4.130 17 C -0.029 4.029 18 C -0.159 4.159 19 C 0.162 3.838 20 F -0.123 7.123 21 C -0.232 4.232 22 C 0.515 3.485 23 F -0.169 7.169 24 F -0.173 7.173 25 F -0.173 7.173 26 C 0.007 3.993 27 H 0.024 0.976 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.101 0.899 32 H 0.266 0.734 33 H 0.388 0.612 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.187 6.998 -14.544 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.345 5.345 14 C 0.326 3.674 15 O -0.415 6.415 16 C -0.134 4.134 17 C -0.048 4.048 18 C -0.178 4.178 19 C 0.142 3.858 20 F -0.101 7.101 21 C -0.234 4.234 22 C 0.461 3.539 23 F -0.151 7.151 24 F -0.154 7.154 25 F -0.155 7.155 26 C -0.012 4.012 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.221 0.779 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.746 6.884 -13.696 17.174 hybrid contribution 1.020 0.206 -0.556 1.180 sum -6.725 7.090 -14.251 17.280 Atomic orbital electron populations 1.21852 0.98295 0.98257 1.01210 1.21944 0.92650 0.99585 1.02484 1.18886 0.94433 0.89297 0.80545 0.92949 1.21192 0.90488 1.39448 1.06499 0.92029 1.24875 0.98682 0.94660 0.95329 1.69885 1.35239 1.37291 1.09313 0.86445 0.84688 0.77723 0.78234 1.20526 1.21031 1.19833 1.46485 1.14139 1.54982 1.18845 1.17879 0.83406 0.79740 0.86327 1.90786 1.51273 1.59977 1.39461 1.20451 0.94685 1.01915 0.96316 1.21558 0.99377 0.93144 0.90715 1.21103 0.95042 1.01291 1.00340 1.17470 0.93536 0.93757 0.81070 1.91577 1.92020 1.80142 1.46408 1.19986 0.94956 1.10743 0.97726 1.17951 0.85271 0.76575 0.74093 1.93209 1.80316 1.95256 1.46276 1.93235 1.95795 1.32723 1.93692 1.93232 1.80817 1.83079 1.58327 1.21066 0.95834 0.89142 0.95116 0.95678 0.93027 0.94385 0.94906 0.88101 0.92440 0.77874 0.83195 0.82895 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.52 37.16 0.32 -2.62 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.32 2.24 -69.08 -0.15 6.17 16 4 H 0.05 1.44 7.57 -51.93 -0.39 1.04 16 5 C -0.54 -13.32 8.73 -34.44 -0.30 -13.63 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.63 11.29 55.43 0.63 -23.00 16 9 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 N -0.70 -12.99 4.97 -55.91 -0.28 -13.27 16 14 C 0.54 9.77 6.35 -12.38 -0.08 9.69 16 15 O -0.54 -11.51 13.49 5.31 0.07 -11.44 16 16 C -0.13 -1.79 5.87 -104.96 -0.62 -2.40 16 17 C -0.03 -0.30 9.54 -39.20 -0.37 -0.68 16 18 C -0.16 -1.46 10.01 -39.57 -0.40 -1.86 16 19 C 0.16 1.77 7.14 -39.28 -0.28 1.49 16 20 F -0.12 -1.38 16.44 2.25 0.04 -1.34 16 21 C -0.23 -2.78 5.37 -104.62 -0.56 -3.34 16 22 C 0.52 6.21 3.02 36.01 0.11 6.31 16 23 F -0.17 -2.08 15.96 2.25 0.04 -2.05 16 24 F -0.17 -2.11 17.05 2.25 0.04 -2.08 16 25 F -0.17 -2.11 17.05 2.25 0.04 -2.07 16 26 C 0.01 0.10 8.97 -39.20 -0.35 -0.25 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.16 7.85 -51.93 -0.41 0.76 16 29 H 0.04 0.77 5.66 -51.93 -0.29 0.48 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 32 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.39 6.00 6.57 -40.82 -0.27 5.73 16 34 H 0.15 1.26 6.40 -52.49 -0.34 0.92 16 35 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.16 2.18 6.74 -52.49 -0.35 1.83 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -28.14 320.73 -5.72 -33.86 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.17 Total: 4.42 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.93 Total: -2.54 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.35 Total: -36.27 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.07 Total: -11.44 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 0.15 Total: -7.53 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.14 -5.72 -33.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.871 kcal (2) G-P(sol) polarization free energy of solvation -28.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds